Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g02690 Coffea canephora HOM05D001921 ORTHO05D001784 1.3e-116 423.3 246 100.0
Nitab4.5_0002295g0070 Nicotiana tabacum HOM05D001921 ORTHO05D001784 2.7e-18 96.7 246 35.0
Nitab4.5_0009936g0010 Nicotiana tabacum HOM05D001921 ORTHO05D001784 2.3e-17 93.6 252 34.1
PGSC0003DMG400030765 Solanum tuberosum HOM05D001921 ORTHO05D001784 1.1e-16 91.3 259 32.8
Hma1.2p1_0511F.1_g169240 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 8.1e-15 85.1 272 32.0
PGSC0003DMG400032113 Solanum tuberosum HOM05D001921 ORTHO05D001784 8.1e-15 85.1 251 35.5
CAN.G889.1 Capsicum annuum HOM05D001921 ORTHO05D001784 1.1e-14 84.7 247 33.2
Solyc06g054470.1 Solanum lycopersicum HOM05D001921 ORTHO05D001784 6.9e-14 82.0 265 30.6
Oeu022233.1 Olea europaea HOM05D001921 ORTHO05D001784 9.0e-14 81.6 250 34.0
Sopen06g019540 Solanum pennellii HOM05D001921 ORTHO05D001784 1.2e-13 81.3 259 31.3
Manes.15G019800 Manihot esculenta HOM05D001921 ORTHO05D001784 2.0e-13 80.5 249 30.9
Peaxi162Scf00769g00001 Petunia axillaris HOM05D001921 ORTHO05D001784 3.4e-13 79.7 246 32.1
Rhsim02G0016000 Rhododendron simsii HOM05D001921 ORTHO05D001784 4.5e-13 79.3 289 30.1
DCAR_002429 Daucus carota HOM05D001921 ORTHO05D001784 4.9e-12 75.9 260 35.0
Oeu032694.1 Olea europaea HOM05D001921 ORTHO05D001784 4.9e-12 75.9 246 36.2
CAN.G256.2 Capsicum annuum HOM05D001921 ORTHO05D001784 6.4e-12 75.5 265 29.4
Prupe.1G145900 Prunus persica HOM05D001921 ORTHO05D001784 6.4e-12 75.5 270 33.3
Sabra08G0162400 Salix brachista HOM05D001921 ORTHO05D001784 6.4e-12 75.5 279 29.4
ClCG06G005610 Citrullus lanatus HOM05D001921 ORTHO05D001784 1.4e-11 74.3 272 29.4
MELO3C021383.2 Cucumis melo HOM05D001921 ORTHO05D001784 1.4e-11 74.3 273 30.4
Potri.010G027500 Populus trichocarpa HOM05D001921 ORTHO05D001784 1.4e-11 74.3 274 30.3
Haze_01021 Corylus avellana HOM05D001921 ORTHO05D001784 1.9e-11 73.9 257 30.4
Cfa015526 Carpinus fangiana HOM05D001921 ORTHO05D001784 2.4e-11 73.6 258 30.6
Manes.03G188600 Manihot esculenta HOM05D001921 ORTHO05D001784 2.4e-11 73.6 247 30.0
CsaV3_6G005540 Cucumis sativus L. HOM05D001921 ORTHO05D001784 5.5e-11 72.4 273 30.0
Cpa.g.sc16.79 Carica papaya HOM05D001921 ORTHO05D001784 7.1e-11 72.0 273 30.0
Nitab4.5_0000059g0260 Nicotiana tabacum HOM05D001921 ORTHO05D001784 7.1e-11 72.0 265 31.7
Solyc01g080500.2 Solanum lycopersicum HOM05D001921 ORTHO05D001784 7.1e-11 72.0 252 32.5
CiPaw.01G156200 Carya illinoinensis HOM05D001921 ORTHO05D001784 9.3e-11 71.6 269 32.3
Glyma.17G021000 Glycine max HOM05D001921 ORTHO05D001784 9.3e-11 71.6 255 31.8
SGA_v2.0_scaffold89G27578 Striga asiatica HOM05D001921 ORTHO05D001784 9.3e-11 71.6 266 30.5
Sopen01g032320 Solanum pennellii HOM05D001921 ORTHO05D001784 1.6e-10 70.9 264 31.4
Atru.chr4.2710 Acer truncatum HOM05D001921 ORTHO05D001784 3.5e-10 69.7 246 30.1
CiPaw.02G088800 Carya illinoinensis HOM05D001921 ORTHO05D001784 3.5e-10 69.7 279 31.5
Sed0022941 Sechium edule HOM05D001921 ORTHO05D001784 3.5e-10 69.7 255 30.2
FvH4_4g16740 Fragaria vesca HOM05D001921 ORTHO05D001784 4.6e-10 69.3 260 30.4
FAN12G2234 Fragaria x ananassa HOM05D001921 ORTHO05D001784 4.6e-10 69.3 260 30.4
FAN12G3386 Fragaria x ananassa HOM05D001921 ORTHO05D001784 4.6e-10 69.3 260 30.4
VMungo1215G1281 Vigna mungo HOM05D001921 ORTHO05D001784 4.6e-10 69.3 118 44.1
Phvul.003G098700 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 6.0e-10 68.9 254 31.1
Hma1.2p1_0643F.1_g194540 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 7.9e-10 68.6 288 29.5
Potri.008G198000 Populus trichocarpa HOM05D001921 ORTHO05D001784 7.9e-10 68.6 280 28.9
Ca_00585_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 1.0e-09 68.2 265 29.4
Aa31LG8G8240 Aethionema arabicum HOM05D001921 ORTHO05D001784 1.3e-09 67.8 124 39.5
Ca_21561_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 1.3e-09 67.8 113 41.6
PSO782G1936 Papaver somniferum HOM05D001921 ORTHO05D001784 1.8e-09 67.4 141 36.2
Sed0007577 Sechium edule HOM05D001921 ORTHO05D001784 1.8e-09 67.4 272 29.0
QL06p006408 Quercus lobata HOM05D001921 ORTHO05D001784 3.0e-09 66.6 286 28.3
CANSAT78G1722 Cannabis sativa HOM05D001921 ORTHO05D001784 5.1e-09 65.9 280 28.9
FAN07G0769 Fragaria x ananassa HOM05D001921 ORTHO05D001784 5.1e-09 65.9 147 40.1
PGR004G0777 Punica granatum HOM05D001921 ORTHO05D001784 6.7e-09 65.5 258 32.6
Nitab4.5_0003070g0060 Nicotiana tabacum HOM05D001921 ORTHO05D001784 1.1e-08 64.7 145 40.7
Oeu037657.1 Olea europaea HOM05D001921 ORTHO05D001784 1.1e-08 64.7 267 28.8
RcHm_v2.0_Chr4g0420321 Rosa chinensis HOM05D001921 ORTHO05D001784 1.1e-08 64.7 259 29.3
SGA_v2.0_scaffold142G35647 Striga asiatica HOM05D001921 ORTHO05D001784 1.1e-08 64.7 267 30.7
Thecc.04G273300 Theobroma cacao HOM05D001921 ORTHO05D001784 1.5e-08 64.3 272 29.4
Duzib212G0985 Durio zibethinus HOM05D001921 ORTHO05D001784 1.9e-08 63.9 267 29.6
Actinidia00069 Actinidia chinensis HOM05D001921 ORTHO05D001784 2.5e-08 63.5 244 29.9
FAN17G2860 Fragaria x ananassa HOM05D001921 ORTHO05D001784 2.5e-08 63.5 259 28.6
Glyma.07G253400 Glycine max HOM05D001921 ORTHO05D001784 2.5e-08 63.5 116 43.1
Gohir.D09G059900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 2.5e-08 63.5 147 37.4
Gorai.006G074600 Gossypium raimondii HOM05D001921 ORTHO05D001784 3.3e-08 63.2 147 37.4
Phvul.006G158900 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 3.3e-08 63.2 253 30.0
Psat4g028640 Pisum sativum HOM05D001921 ORTHO05D001784 3.3e-08 63.2 119 42.9
DCAR_023282 Daucus carota HOM05D001921 ORTHO05D001784 4.3e-08 62.8 119 43.7
Duzib151G0850 Durio zibethinus HOM05D001921 ORTHO05D001784 4.3e-08 62.8 160 34.4
THA.LOC104820224 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 4.3e-08 62.8 119 42.9
Gohir.A09G060900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 7.4e-08 62.0 280 28.9
Gohir.D10G163601 Gossypium hirsutum HOM05D001921 ORTHO05D001784 7.4e-08 62.0 274 27.4
TAR362G1200 Trochodendron aralioides HOM05D001921 ORTHO05D001784 7.4e-08 62.0 246 28.9
Lj6g0003156 Lotus japonicus HOM05D001921 ORTHO05D001784 1.3e-07 61.2 265 28.7
Lj6g0019677 Lotus japonicus HOM05D001921 ORTHO05D001784 1.3e-07 61.2 265 28.7
FAN22G2319 Fragaria x ananassa HOM05D001921 ORTHO05D001784 1.6e-07 60.8 257 28.0
Gorai.011G182400 Gossypium raimondii HOM05D001921 ORTHO05D001784 1.6e-07 60.8 274 27.4
Sabra10G0013000 Salix brachista HOM05D001921 ORTHO05D001784 1.6e-07 60.8 254 30.7
Eucgr.H03650 Eucalyptus grandis HOM05D001921 ORTHO05D001784 2.1e-07 60.5 246 28.9
Gohir.A10G105100 Gossypium hirsutum HOM05D001921 ORTHO05D001784 2.1e-07 60.5 274 27.0
TAR365G0872 Trochodendron aralioides HOM05D001921 ORTHO05D001784 2.8e-07 60.1 67 55.2
MSTRG.3970 Avicennia marina HOM05D001921 ORTHO05D001784 3.7e-07 59.7 129 37.2
unitig_748.g8567 Utricularia gibba HOM05D001921 ORTHO05D001784 4.8e-07 59.3 112 39.3
Lalb_Chr18g0055871 Lupinus albus HOM05D001921 ORTHO05D001784 6.2e-07 58.9 115 44.3
Migut.G00240 Erythranthe guttata HOM05D001921 ORTHO05D001784 8.1e-07 58.5 250 26.4
Actinidia32376 Actinidia chinensis HOM05D001921 ORTHO05D001784 1.1e-06 58.2 154 36.4
AL3G35680 Arabidopsis lyrata HOM05D001921 ORTHO05D001784 1.1e-06 58.2 115 37.4
BcaB04g20578 Brassica carinata HOM05D001921 ORTHO05D001784 1.1e-06 58.2 98 39.8
CARHR097520 Cardamine hirsuta HOM05D001921 ORTHO05D001784 1.1e-06 58.2 246 25.6
Lalb_Chr12g0196391 Lupinus albus HOM05D001921 ORTHO05D001784 1.1e-06 58.2 102 44.1
Lalb_Chr15g0087151 Lupinus albus HOM05D001921 ORTHO05D001784 1.1e-06 58.2 257 30.7
Lsat_1_v5_gn_5_51861 Lactuca sativa HOM05D001921 ORTHO05D001784 1.4e-06 57.8 99 44.4
TPR.G18029 Trifolium pratense HOM05D001921 ORTHO05D001784 1.8e-06 57.4 133 36.8
unitig_32.g11745 Utricularia gibba HOM05D001921 ORTHO05D001784 1.8e-06 57.4 119 37.8
Aqoxy2G03179 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 3.1e-06 56.6 262 27.1
PGR031G1199 Punica granatum HOM05D001921 ORTHO05D001784 3.1e-06 56.6 264 29.5
TAR636G3386 Trochodendron aralioides HOM05D001921 ORTHO05D001784 3.1e-06 56.6 246 30.1
BcaC09g49094 Brassica carinata HOM05D001921 ORTHO05D001784 4.0e-06 56.2 98 39.8
A01p33350 Brassica napus HOM05D001921 ORTHO05D001784 4.0e-06 56.2 98 39.8
C01p42590 Brassica napus HOM05D001921 ORTHO05D001784 4.0e-06 56.2 98 39.8
BolC1t04216H Brassica oleracea HOM05D001921 ORTHO05D001784 4.0e-06 56.2 98 39.8
BraA01t03453Z Brassica rapa HOM05D001921 ORTHO05D001784 4.0e-06 56.2 98 39.8
Lj4g0019196 Lotus japonicus HOM05D001921 ORTHO05D001784 4.0e-06 56.2 131 38.9
Glyma.15G100300 Glycine max HOM05D001921 ORTHO05D001784 5.3e-06 55.8 249 28.9
DCAR_030578 Daucus carota HOM05D001921 ORTHO05D001784 6.9e-06 55.5 246 27.2
Peaxi162Scf00095g00034 Petunia axillaris HOM05D001921 ORTHO05D001784 6.9e-06 55.5 106 41.5
Ciclev10005894m.g Citrus clementina HOM05D001921 ORTHO05D001784 9.0e-06 55.1 249 30.1
Medtr4g118490 Medicago truncatula HOM05D001921 ORTHO05D001784 9.0e-06 55.1 116 38.8


User provided reference genes

Program Settings