Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g02610 Coffea canephora HOM05D007734 ORTHO05D009807 2.6e-43 178.3 92 100.0
SGA_v2.0_scaffold142G35667 Striga asiatica HOM05D007734 ORTHO05D009807 3.6e-24 114.8 86 69.8
Oeu044804.1 Olea europaea HOM05D007734 ORTHO05D009807 1.0e-23 113.2 86 69.8
Migut.G00233 Erythranthe guttata HOM05D007734 ORTHO05D009807 6.8e-23 110.5 86 68.6
QL06p006592 Quercus lobata HOM05D007734 ORTHO05D009807 6.8e-23 110.5 85 65.9
Duzib151G0459 Durio zibethinus HOM05D007734 ORTHO05D009807 1.2e-22 109.8 85 64.7
CiPaw.01G155700 Carya illinoinensis HOM05D007734 ORTHO05D009807 1.5e-22 109.4 88 63.6
MELO3C021378.2 Cucumis melo HOM05D007734 ORTHO05D009807 4.4e-22 107.8 91 61.5
Peaxi162Scf00095g00125 Petunia axillaris HOM05D007734 ORTHO05D009807 4.4e-22 107.8 85 64.7
ClCG06G005560 Citrullus lanatus HOM05D007734 ORTHO05D009807 5.7e-22 107.5 91 63.7
CsaV3_6G005600 Cucumis sativus L. HOM05D007734 ORTHO05D009807 5.7e-22 107.5 91 61.5
GSVIVG01017837001 Vitis vinifera HOM05D007734 ORTHO05D009807 5.7e-22 107.5 81 64.2
Duzib052G0038 Durio zibethinus HOM05D007734 ORTHO05D009807 9.8e-22 106.7 86 64.0
Hma1.2p1_0643F.1_g194590 Hydrangea macrophylla HOM05D007734 ORTHO05D009807 9.8e-22 106.7 78 67.9
CiPaw.02G088300 Carya illinoinensis HOM05D007734 ORTHO05D009807 1.3e-21 106.3 91 60.4
Thecc.04G274000 Theobroma cacao HOM05D007734 ORTHO05D009807 1.3e-21 106.3 85 63.5
TWI73G0877 Tripterygium wilfordii HOM05D007734 ORTHO05D009807 1.7e-21 105.9 85 62.4
Cfa015520 Carpinus fangiana HOM05D007734 ORTHO05D009807 2.8e-21 105.1 85 63.5
MD13G1176100 Malus domestica HOM05D007734 ORTHO05D009807 2.8e-21 105.1 98 61.2
MD16G1177900 Malus domestica HOM05D007734 ORTHO05D009807 4.8e-21 104.4 97 57.7
RcHm_v2.0_Chr4g0420431 Rosa chinensis HOM05D007734 ORTHO05D009807 6.3e-21 104.0 96 61.5
FvH4_4g16860 Fragaria vesca HOM05D007734 ORTHO05D009807 8.3e-21 103.6 89 60.7
FAN12G0936 Fragaria x ananassa HOM05D007734 ORTHO05D009807 8.3e-21 103.6 89 60.7
FAN12G2573 Fragaria x ananassa HOM05D007734 ORTHO05D009807 8.3e-21 103.6 89 60.7
Glyma.17G021500 Glycine max HOM05D007734 ORTHO05D009807 8.3e-21 103.6 72 70.8
Gorai.006G074800 Gossypium raimondii HOM05D007734 ORTHO05D009807 8.3e-21 103.6 85 63.5
Lj4g0025137 Lotus japonicus HOM05D007734 ORTHO05D009807 8.3e-21 103.6 85 64.7
MBI19_g13511_MAGBIO Magnolia biondii HOM05D007734 ORTHO05D009807 8.3e-21 103.6 96 55.2
Sed0021110 Sechium edule HOM05D007734 ORTHO05D009807 8.3e-21 103.6 85 63.5
Atru.chr4.2717 Acer truncatum HOM05D007734 ORTHO05D009807 1.1e-20 103.2 85 63.5
Prupe.1G145200 Prunus persica HOM05D007734 ORTHO05D009807 1.1e-20 103.2 98 58.2
Aa31LG11G10850 Aethionema arabicum HOM05D007734 ORTHO05D009807 1.4e-20 102.8 90 58.9
CANSAT78G1562 Cannabis sativa HOM05D007734 ORTHO05D009807 1.4e-20 102.8 91 59.3
FAN07G1074 Fragaria x ananassa HOM05D007734 ORTHO05D009807 1.4e-20 102.8 89 62.9
FAN17G2648 Fragaria x ananassa HOM05D007734 ORTHO05D009807 1.4e-20 102.8 89 62.9
Glyma.07G252900 Glycine max HOM05D007734 ORTHO05D009807 1.4e-20 102.8 72 70.8
Gohir.D10G164200 Gossypium hirsutum HOM05D007734 ORTHO05D009807 1.8e-20 102.4 87 62.1
Gorai.011G183300 Gossypium raimondii HOM05D007734 ORTHO05D009807 1.8e-20 102.4 87 62.1
arahy.Tifrunner.gnm1.ann1.80YKV9 Arachis hypogaea HOM05D007734 ORTHO05D009807 2.4e-20 102.1 85 62.4
arahy.Tifrunner.gnm1.ann1.F9B3QK Arachis hypogaea HOM05D007734 ORTHO05D009807 2.4e-20 102.1 85 62.4
Haze_01029 Corylus avellana HOM05D007734 ORTHO05D009807 2.4e-20 102.1 85 62.4
Gohir.D09G060100 Gossypium hirsutum HOM05D007734 ORTHO05D009807 2.4e-20 102.1 85 62.4
Sed0016523 Sechium edule HOM05D007734 ORTHO05D009807 2.4e-20 102.1 91 61.5
Manes.03G189200 Manihot esculenta HOM05D007734 ORTHO05D009807 4.1e-20 101.3 85 58.8
TWI09G1295 Tripterygium wilfordii HOM05D007734 ORTHO05D009807 4.1e-20 101.3 85 62.4
Nn4g26101 Nelumbo nucifera HOM05D007734 ORTHO05D009807 7.0e-20 100.5 91 60.4
Nitab4.5_0009396g0030 Nicotiana tabacum HOM05D007734 ORTHO05D009807 9.1e-20 100.1 72 69.4
Phvul.003G099200 Phaseolus vulgaris HOM05D007734 ORTHO05D009807 9.1e-20 100.1 72 69.4
CAN.G627.13 Capsicum annuum HOM05D007734 ORTHO05D009807 1.2e-19 99.8 85 61.2
Gohir.A09G061200 Gossypium hirsutum HOM05D007734 ORTHO05D009807 1.6e-19 99.4 85 61.2
PGSC0003DMG400032093 Solanum tuberosum HOM05D007734 ORTHO05D009807 1.6e-19 99.4 79 63.3
Eucgr.H03661 Eucalyptus grandis HOM05D007734 ORTHO05D009807 2.0e-19 99.0 88 59.1
Sopen01g032410 Solanum pennellii HOM05D007734 ORTHO05D009807 2.7e-19 98.6 79 63.3
TAR365G0453 Trochodendron aralioides HOM05D007734 ORTHO05D009807 2.7e-19 98.6 91 61.5
Gohir.A10G104500 Gossypium hirsutum HOM05D007734 ORTHO05D009807 3.5e-19 98.2 87 59.8
AL6G30210 Arabidopsis lyrata HOM05D007734 ORTHO05D009807 4.5e-19 97.8 89 59.6
AT5G18850 Arabidopsis thaliana HOM05D007734 ORTHO05D009807 4.5e-19 97.8 89 57.3
CARHR194160 Cardamine hirsuta HOM05D007734 ORTHO05D009807 4.5e-19 97.8 88 61.4
Dinv44448 Davidia involucrata HOM05D007734 ORTHO05D009807 4.5e-19 97.8 91 61.5
PSO302G0168 Papaver somniferum HOM05D007734 ORTHO05D009807 4.5e-19 97.8 92 54.3
Potri.010G026900 Populus trichocarpa HOM05D007734 ORTHO05D009807 5.9e-19 97.4 80 63.8
Solyc01g080590.3 Solanum lycopersicum HOM05D007734 ORTHO05D009807 5.9e-19 97.4 79 62.0
BraA03t10238Z Brassica rapa HOM05D007734 ORTHO05D009807 7.7e-19 97.1 84 59.5
Thhalv10015120m.g Eutrema salsugineum HOM05D007734 ORTHO05D009807 7.7e-19 97.1 88 58.0
Actinidia40206 Actinidia chinensis HOM05D007734 ORTHO05D009807 1.0e-18 96.7 89 57.3
Ca_30429_v3 Cicer arietinum L. HOM05D007734 ORTHO05D009807 1.0e-18 96.7 71 70.4
CSS0028590 Camellia sinensis var. sinensis HOM05D007734 ORTHO05D009807 1.7e-18 95.9 72 68.1
Carub.0006s1717 Capsella rubella HOM05D007734 ORTHO05D009807 1.7e-18 95.9 91 58.2
Sabra08G0163100 Salix brachista HOM05D007734 ORTHO05D009807 5.0e-18 94.4 72 65.3
BcaB01g05276 Brassica carinata HOM05D007734 ORTHO05D009807 8.5e-18 93.6 84 57.1
BolC3t13544H Brassica oleracea HOM05D007734 ORTHO05D009807 8.5e-18 93.6 84 57.1
CDE05G0384 Ceratophyllum demersum HOM05D007734 ORTHO05D009807 8.5e-18 93.6 77 62.3
Potri.008G197300 Populus trichocarpa HOM05D007734 ORTHO05D009807 8.5e-18 93.6 72 65.3
Psat4g030040 Pisum sativum HOM05D007734 ORTHO05D009807 1.1e-17 93.2 64 71.9
Sp6g25520 Schrenkiella parvula HOM05D007734 ORTHO05D009807 1.9e-17 92.4 84 56.0
ATR0487G018 Amborella trichopoda HOM05D007734 ORTHO05D009807 2.5e-17 92.0 91 53.8
C03p10680 Brassica napus HOM05D007734 ORTHO05D009807 2.5e-17 92.0 66 66.7
Ciclev10007097m.g Citrus clementina HOM05D007734 ORTHO05D009807 2.5e-17 92.0 87 54.0
BcaB01g04888 Brassica carinata HOM05D007734 ORTHO05D009807 9.5e-17 90.1 66 66.7
Lalb_Chr07g0177521 Lupinus albus HOM05D007734 ORTHO05D009807 1.2e-16 89.7 69 62.3
MSTRG.3964 Avicennia marina HOM05D007734 ORTHO05D009807 6.1e-16 87.4 100 53.0
CDE05G0036 Ceratophyllum demersum HOM05D007734 ORTHO05D009807 2.0e-14 82.4 54 66.7
THA.LOC104818832 Tarenaya hassleriana HOM05D002550 ORTHO05D003420 2.0e-14 82.4 73 58.9
Aqoxy5G00589 Aquilegia oxysepala HOM05D007734 ORTHO05D009807 2.0e-11 72.4 78 44.9
SEGI_32711 Sequoiadendron giganteum HOM05D007734 ORTHO05D009807 4.5e-11 71.2 75 46.7
Nitab4.5_0000059g0330 Nicotiana tabacum HOM05D007734 ORTHO05D009807 6.6e-10 67.4 48 68.8
FAN22G2010 Fragaria x ananassa HOM05D007734 ORTHO05D001690 4.3e-09 64.7 79 50.6
Sc13g0003750 Simmondsia chinensis HOM05D007734 ORTHO05D009807 2.1e-08 62.4 50 64.0
A03p09150 Brassica napus HOM05D007734 ORTHO05D009807 3.0e-07 58.5 44 61.4
Actinidia00065 Actinidia chinensis HOM05D007734 ORTHO05D009807 1.2e-06 56.6 85 42.4
BcaB08g36639 Brassica carinata HOM05D007734 ORTHO05D009807 7.5e-06 53.9 41 61.0


User provided reference genes

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