Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 7.9e-225 783.5 403 100.0
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 5.1e-131 471.9 406 61.3
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 1.5e-127 460.3 407 59.2
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 7.6e-127 458.0 347 64.8
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 6.4e-126 454.9 410 56.8
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 8.4e-126 454.5 406 57.6
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 8.4e-126 454.5 406 57.9
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 4.6e-124 448.7 408 58.6
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.0e-123 447.6 414 58.0
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.3e-123 447.2 409 57.9
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.3e-123 447.2 410 58.8
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 1.1e-122 444.1 410 58.3
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 8.1e-121 438.0 411 56.2
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 1.8e-120 436.8 421 56.5
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 1.8e-120 436.8 410 56.3
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.8e-120 436.8 414 58.0
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 2.4e-120 436.4 400 57.2
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 2.0e-119 433.3 347 60.8
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 3.4e-119 432.6 409 58.2
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 4.4e-119 432.2 356 59.6
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 2.2e-118 429.9 405 56.5
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.9e-118 429.5 400 57.8
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 7.1e-117 424.9 400 55.2
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 9.3e-117 424.5 409 55.7
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.1e-116 423.3 408 56.9
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 2.7e-116 422.9 329 62.0
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 7.8e-116 421.4 396 55.8
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 7.8e-116 421.4 400 57.8
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 1.0e-115 421.0 408 55.4
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 1.0e-115 421.0 325 62.5
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 1.3e-115 420.6 329 62.0
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 3.0e-115 419.5 425 52.7
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 5.1e-115 418.7 309 65.4
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 5.6e-114 415.2 408 53.7
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 7.3e-114 414.8 409 52.8
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 7.3e-114 414.8 404 53.7
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 1.6e-113 413.7 405 55.6
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 2.1e-113 413.3 406 53.7
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 8.1e-113 411.4 329 60.5
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 8.1e-113 411.4 400 53.8
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 2.4e-112 409.8 373 57.9
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 2.4e-112 409.8 321 61.4
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 3.1e-112 409.5 321 60.7
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 3.1e-112 409.5 329 59.3
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 5.3e-112 408.7 325 62.2
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 6.9e-112 408.3 407 52.6
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 9.0e-112 407.9 387 55.6
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 9.0e-112 407.9 426 54.7
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 2.6e-111 406.4 331 59.8
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 3.4e-111 406.0 311 63.0
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 3.4e-111 406.0 405 55.1
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 4.5e-111 405.6 407 52.6
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 5.8e-111 405.2 417 52.3
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 5.8e-111 405.2 401 52.4
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 7.6e-111 404.8 407 53.3
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 1.3e-110 404.1 405 52.8
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 1.3e-110 404.1 356 57.3
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 2.9e-110 402.9 404 52.7
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 3.8e-110 402.5 331 59.5
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 6.4e-110 401.7 403 53.6
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 6.4e-110 401.7 403 53.6
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 1.1e-109 401.0 404 53.0
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 1.1e-109 401.0 405 53.1
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 1.1e-109 401.0 326 58.6
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 1.1e-109 401.0 313 60.4
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 1.4e-109 400.6 312 61.5
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 1.4e-109 400.6 307 63.5
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 1.9e-109 400.2 403 53.3
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 3.2e-109 399.4 409 52.6
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 9.3e-109 397.9 348 56.3
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 2.1e-108 396.7 406 52.5
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 2.1e-108 396.7 323 58.2
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 3.5e-108 396.0 388 54.1
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 4.6e-108 395.6 409 53.5
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 1.0e-107 394.4 342 57.0
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 1.3e-107 394.0 334 57.5
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 1.3e-107 394.0 408 52.7
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 5.1e-107 392.1 406 52.5
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 5.1e-107 392.1 402 52.0
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 6.7e-107 391.7 317 60.9
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 2.5e-106 389.8 409 50.4
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 7.4e-106 388.3 357 56.0
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 3.7e-105 386.0 419 49.9
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 8.1e-105 384.8 360 54.4
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 3.1e-104 382.9 323 54.8
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 5.3e-104 382.1 411 51.8
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 9.0e-104 381.3 323 55.7
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 3.4e-103 379.4 388 52.3
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 3.4e-103 379.4 474 46.4
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 3.4e-103 379.4 296 63.9
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 1.6e-100 370.5 398 50.5
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 9.6e-98 361.3 340 57.1
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 2.1e-97 360.1 325 55.1
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 1.1e-96 357.8 269 63.6
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 1.1e-96 357.8 350 53.7
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 5.3e-96 355.5 316 54.7
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 2.0e-95 353.6 315 54.6
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 2.6e-95 353.2 397 48.4
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 4.5e-95 352.4 349 53.3
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 1.7e-94 350.5 396 48.7
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 2.5e-90 336.7 318 51.9
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 8.5e-86 321.6 313 51.1
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 3.2e-85 319.7 311 54.7
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 2.5e-82 310.1 285 56.1
BcaB04g18303 Brassica carinata HOM05D005247 ORTHO05D006571 7.4e-82 308.5 306 52.9
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 4.5e-79 299.3 344 48.5
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 7.9e-76 288.5 313 50.2
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 3.0e-75 286.6 231 61.5
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 8.8e-75 285.0 297 54.2
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 3.4e-71 273.1 279 50.9
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 1.8e-67 260.8 369 43.1
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 1.8e-67 260.8 281 50.2
Lj6A670T87 Lonicera japonica HOM05D005247 ORTHO05D006571 9.7e-66 255.0 307 46.9
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 2.0e-63 247.3 322 43.5
SHI00299 Sapria himalayana HOM05D005247 ORTHO05D000987 1.3e-49 201.4 264 43.6
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 1.7e-49 201.1 283 41.0
Eucgr.C02045 Eucalyptus grandis HOM05D005247 ORTHO05D006571 7.8e-39 165.6 133 60.9
BraA08t33173Z Brassica rapa HOM05D005247 ORTHO05D006571 1.0e-38 165.2 123 65.0
Sabra08G0156700 Salix brachista HOM05D005247 ORTHO05D006571 5.8e-34 149.4 123 59.3
Mapoly0002s0143 Marchantia polymorpha HOM05D005247 ORTHO05D006571 1.7e-33 147.9 335 29.3
Pp3c14_15200 Physcomitrium patens HOM05D005247 ORTHO05D006571 3.9e-30 136.7 296 32.1
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 3.9e-30 136.7 182 42.3
Psat5g177080 Pisum sativum HOM05D005247 ORTHO05D006571 6.6e-30 136.0 182 40.1
SEGI_33954 Sequoiadendron giganteum HOM05D005247 ORTHO05D000001 3.4e-26 123.6 143 45.5
AagrBONN_evm.TU.Sc2ySwM_228.2885 Anthoceros agrestis HOM05D005247 ORTHO05D006571 2.1e-23 114.4 212 37.7
RcHm_v2.0_Chr4g0421891 Rosa chinensis HOM05D005247 ORTHO05D006571 2.1e-23 114.4 95 62.1
CBR_g30222 Chara braunii HOM05D005247 ORTHO05D006571 1.3e-22 111.7 327 26.3
SMO202G0041 Selaginella moellendorffii HOM05D005247 ORTHO05D006571 1.7e-22 111.3 248 29.8
Psat6g103040 Pisum sativum HOM05D005247 ORTHO05D006571 2.3e-22 110.9 77 64.9
Eucgr.F02603 Eucalyptus grandis HOM05D005247 ORTHO05D006571 6.6e-22 109.4 69 68.1
BcaC07g37894 Brassica carinata HOM05D005247 ORTHO05D006571 1.4e-19 101.7 143 44.1
CAN.G640.20 Capsicum annuum HOM05D005247 ORTHO05D006571 1.8e-19 101.3 114 45.6
CAN.G640.21 Capsicum annuum HOM05D005247 ORTHO05D006571 2.3e-19 100.9 152 40.1
Actinidia40231 Actinidia chinensis HOM05D005247 ORTHO05D006571 1.5e-18 98.2 91 53.8
Eucgr.H03759 Eucalyptus grandis HOM05D005247 ORTHO05D006571 4.1e-16 90.1 93 49.5
Pp3c14_7470 Physcomitrium patens HOM05D005247 ORTHO05D006571 6.2e-12 76.3 310 23.5
FAN22G1325 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.3e-09 68.6 71 52.1
Hund28065 Selenicereus undatus HOM05D000003 ORTHO05D000006 3.0e-06 57.4 189 28.6
Hund28074 Selenicereus undatus HOM05D000003 ORTHO05D000006 3.0e-06 57.4 189 28.6


User provided reference genes

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