Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g02070 Coffea canephora HOM05D006881 ORTHO05D008423 5.8e-64 247.7 150 100.0
Solyc01g067580.4 Solanum lycopersicum HOM05D006881 ORTHO05D008423 3.4e-40 168.7 152 73.7
MSTRG.10082 Avicennia marina HOM05D006881 ORTHO05D008423 4.5e-40 168.3 155 74.8
Sopen01g029530 Solanum pennellii HOM05D006881 ORTHO05D008423 7.6e-40 167.5 153 72.5
CAN.G223.19 Capsicum annuum HOM05D006881 ORTHO05D008423 3.8e-39 165.2 117 74.4
Peaxi162Scf00386g00414 Petunia axillaris HOM05D006881 ORTHO05D008423 4.2e-38 161.8 107 76.6
PGSC0003DMG400010658 Solanum tuberosum HOM05D006881 ORTHO05D008423 7.1e-38 161.0 153 70.6
Migut.G00182 Erythranthe guttata HOM05D006881 ORTHO05D008423 1.2e-37 160.2 151 71.5
Dinv38306 Davidia involucrata HOM05D006881 ORTHO05D008423 2.7e-37 159.1 103 79.6
SGA_v2.0_scaffold86G26903 Striga asiatica HOM05D006881 ORTHO05D008423 2.7e-37 159.1 154 70.8
vmacro15245 Vaccinium macrocarpon HOM05D006881 ORTHO05D008423 1.0e-36 157.1 116 72.4
Oeu021111.1 Olea europaea HOM05D006881 ORTHO05D008423 5.1e-36 154.8 116 73.3
unitig_748.g8741 Utricularia gibba HOM05D006881 ORTHO05D008423 8.7e-36 154.1 105 78.1
Manes.03G192600 Manihot esculenta HOM05D006881 ORTHO05D008423 1.9e-35 152.9 146 68.5
Sabra08G0154800 Salix brachista HOM05D006881 ORTHO05D008423 1.9e-35 152.9 110 71.8
CSS0005297 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 2.5e-35 152.5 157 68.2
CSS0009612 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 4.3e-35 151.8 156 68.6
GSVIVG01017769001 Vitis vinifera HOM05D006881 ORTHO05D008423 7.4e-35 151.0 111 72.1
Potri.008G216700 Populus trichocarpa HOM05D006881 ORTHO05D008423 2.1e-34 149.4 108 70.4
SalBow2G2956 Salvia bowleyana HOM05D006881 ORTHO05D008423 3.7e-34 148.7 110 70.9
Thecc.04G282000 Theobroma cacao HOM05D006881 ORTHO05D008423 3.7e-34 148.7 108 73.1
Actinidia00041 Actinidia chinensis HOM05D006881 ORTHO05D008423 4.8e-34 148.3 155 60.0
SalBow2G0124 Salvia bowleyana HOM05D006881 ORTHO05D008423 4.8e-34 148.3 155 67.1
QL06p008283 Quercus lobata HOM05D006881 ORTHO05D008423 8.1e-34 147.5 110 71.8
TAR636G2672 Trochodendron aralioides HOM05D006881 ORTHO05D008423 1.4e-33 146.7 105 74.3
Aa31LG11G11080 Aethionema arabicum HOM05D006881 ORTHO05D008423 4.0e-33 145.2 158 65.8
Duzib212G0198 Durio zibethinus HOM05D006881 ORTHO05D008423 5.3e-33 144.8 108 70.4
Cpa.g.sc16.153 Carica papaya HOM05D006881 ORTHO05D008423 6.9e-33 144.4 106 71.7
PSO210G1559 Papaver somniferum HOM05D006881 ORTHO05D008423 9.0e-33 144.1 109 67.9
CiPaw.01G150600 Carya illinoinensis HOM05D006881 ORTHO05D008423 2.0e-32 142.9 107 69.2
BraA02t05456Z Brassica rapa HOM05D006881 ORTHO05D008423 2.6e-32 142.5 108 71.3
Lsat_1_v5_gn_3_24181 Lactuca sativa HOM05D006881 ORTHO05D008423 3.4e-32 142.1 116 66.4
AT5G18540 Arabidopsis thaliana HOM05D006881 ORTHO05D008423 4.5e-32 141.7 109 71.6
Eucgr.B01283 Eucalyptus grandis HOM05D006881 ORTHO05D008423 4.5e-32 141.7 102 73.5
Phvul.009G245900 Phaseolus vulgaris HOM05D006881 ORTHO05D008423 4.5e-32 141.7 111 68.5
AL6G29810 Arabidopsis lyrata HOM05D006881 ORTHO05D008423 7.6e-32 141.0 107 72.0
ECA246G4172 Erigeron canadensis HOM05D006881 ORTHO05D008423 7.6e-32 141.0 113 68.1
PSO170G5464 Papaver somniferum HOM05D006881 ORTHO05D008423 9.9e-32 140.6 113 64.6
A02p04970 Brassica napus HOM05D006881 ORTHO05D008423 1.7e-31 139.8 109 69.7
Thhalv10014829m.g Eutrema salsugineum HOM05D006881 ORTHO05D008423 1.7e-31 139.8 160 63.8
MD13G1170800 Malus domestica HOM05D006881 ORTHO05D008423 1.7e-31 139.8 115 65.2
THA.LOC104818851 Tarenaya hassleriana HOM05D006881 ORTHO05D008423 1.7e-31 139.8 118 66.9
BcaB05g23335 Brassica carinata HOM05D006881 ORTHO05D008423 2.2e-31 139.4 160 63.8
TPR.G23710 Trifolium pratense HOM05D006881 ORTHO05D008423 2.2e-31 139.4 116 62.9
Carub.0006s1681 Capsella rubella HOM05D006881 ORTHO05D008423 3.8e-31 138.7 157 65.0
Gorai.005G059100 Gossypium raimondii HOM05D006881 ORTHO05D008423 3.8e-31 138.7 106 68.9
Atru.chr4.2800 Acer truncatum HOM05D006881 ORTHO05D008423 4.9e-31 138.3 110 70.9
Ciclev10005896m.g Citrus clementina HOM05D006881 ORTHO05D008423 4.9e-31 138.3 158 63.9
arahy.Tifrunner.gnm1.ann1.E8HU74 Arachis hypogaea HOM05D006881 ORTHO05D008423 6.4e-31 137.9 104 70.2
DCAR_024558 Daucus carota HOM05D006881 ORTHO05D008423 6.4e-31 137.9 116 62.9
Gohir.A02G048200 Gossypium hirsutum HOM05D006881 ORTHO05D008423 6.4e-31 137.9 106 68.9
TWI09G1277 Tripterygium wilfordii HOM05D006881 ORTHO05D008423 6.4e-31 137.9 108 66.7
EL10Ac3g06585 Beta vulgaris HOM05D006881 ORTHO05D008423 8.4e-31 137.5 108 65.7
BcaC03g13606 Brassica carinata HOM05D006881 ORTHO05D008423 8.4e-31 137.5 160 63.1
C02p10000 Brassica napus HOM05D006881 ORTHO05D008423 8.4e-31 137.5 160 63.1
CARHR194480 Cardamine hirsuta HOM05D006881 ORTHO05D008423 8.4e-31 137.5 159 63.5
MBI19_g24002_MAGBIO Magnolia biondii HOM05D006881 ORTHO05D008423 8.4e-31 137.5 107 69.2
HanXRQChr17g0536111 Helianthus annuus HOM05D006881 ORTHO05D008423 1.1e-30 137.1 105 70.5
Lalb_Chr18g0051811 Lupinus albus HOM05D006881 ORTHO05D008423 1.1e-30 137.1 114 62.3
Gohir.D02G053300 Gossypium hirsutum HOM05D006881 ORTHO05D008423 1.4e-30 136.7 106 67.9
Psat1g151960 Pisum sativum HOM05D006881 ORTHO05D008423 1.9e-30 136.3 103 67.0
ClCG05G005980 Citrullus lanatus HOM05D006881 ORTHO05D008423 3.2e-30 135.6 109 67.9
Nitab4.5_0013689g0020 Nicotiana tabacum HOM05D006881 ORTHO05D008423 4.2e-30 135.2 152 64.5
Prupe.1G139200 Prunus persica HOM05D006881 ORTHO05D008423 4.2e-30 135.2 117 65.0
PGR031G0133 Punica granatum HOM05D006881 ORTHO05D008423 4.2e-30 135.2 119 63.0
Sp6g25790 Schrenkiella parvula HOM05D006881 ORTHO05D008423 5.5e-30 134.8 157 63.7
VMungo1309G2079 Vigna mungo HOM05D006881 ORTHO05D008423 5.5e-30 134.8 102 68.6
RcHm_v2.0_Chr4g0421611 Rosa chinensis HOM05D006881 ORTHO05D008423 1.2e-29 133.7 101 69.3
FvH4_4g17670 Fragaria vesca HOM05D006881 ORTHO05D008423 1.6e-29 133.3 111 65.8
FAN12G2006 Fragaria x ananassa HOM05D006881 ORTHO05D008423 1.6e-29 133.3 111 65.8
FAN12G2996 Fragaria x ananassa HOM05D006881 ORTHO05D008423 1.6e-29 133.3 111 65.8
FAN17G1543 Fragaria x ananassa HOM05D006881 ORTHO05D008423 1.6e-29 133.3 111 65.8
Glyma.09G046900 Glycine max HOM05D006881 ORTHO05D008423 3.5e-29 132.1 102 66.7
FAN07G1171 Fragaria x ananassa HOM05D006881 ORTHO05D008423 6.0e-29 131.3 111 64.9
Sed0007304 Sechium edule HOM05D006881 ORTHO05D008423 6.0e-29 131.3 111 64.9
Ca_02413_v3 Cicer arietinum L. HOM05D002802 ORTHO05D003166 1.3e-28 130.2 109 62.4
Aqoxy2G03052 Aquilegia oxysepala HOM05D006881 ORTHO05D008423 1.8e-28 129.8 113 62.8
CANSAT78G0809 Cannabis sativa HOM05D006881 ORTHO05D008423 3.0e-28 129.0 115 65.2
Glyma.15G154400 Glycine max HOM05D006881 ORTHO05D008423 3.0e-28 129.0 102 65.7
Lj6g0021421 Lotus japonicus HOM05D006881 ORTHO05D008423 5.1e-28 128.3 102 63.7
arahy.Tifrunner.gnm1.ann1.NXX1KJ Arachis hypogaea HOM05D006881 ORTHO05D008423 6.7e-28 127.9 123 59.3
BolC2t06902H Brassica oleracea HOM05D006881 ORTHO05D008423 6.7e-28 127.9 102 69.6
HPP92_025214 Vanilla planifolia HOM05D006881 ORTHO05D008423 6.7e-28 127.9 106 64.2
HPP92_025226 Vanilla planifolia HOM05D006881 ORTHO05D008423 6.7e-28 127.9 106 64.2
Hund20570 Selenicereus undatus HOM05D006881 ORTHO05D008423 1.1e-27 127.1 120 58.3
Os07g0669600 Oryza sativa ssp. japonica HOM05D006881 ORTHO05D008423 1.5e-27 126.7 103 66.0
Nn3g21363 Nelumbo nucifera HOM05D006881 ORTHO05D008423 1.9e-27 126.3 82 78.0
Zm00001eb330210 Zea mays HOM05D006881 ORTHO05D008423 3.3e-27 125.6 111 60.4
CsaV3_3G014430 Cucumis sativus L. HOM05D006881 ORTHO05D008423 7.4e-27 124.4 109 64.2
MELO3C006643.2 Cucumis melo HOM05D006881 ORTHO05D008423 2.1e-26 122.9 109 63.3
Rhsim02G0011900 Rhododendron simsii HOM05D006881 ORTHO05D008423 2.8e-26 122.5 82 79.3
Hma1.2p1_0698F.1_g205340 Hydrangea macrophylla HOM05D006881 ORTHO05D008423 3.7e-26 122.1 82 78.0
Sc19g0005040 Simmondsia chinensis HOM05D006881 ORTHO05D008423 4.8e-26 121.7 122 57.4
Medtr2g437470 Medicago truncatula HOM05D006881 ORTHO05D008423 8.2e-26 120.9 105 61.9
CSS0034417 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 3.1e-25 119.0 87 74.7
CDE09G1155 Ceratophyllum demersum HOM05D006881 ORTHO05D008423 4.0e-25 118.6 99 65.7
SMO367G0816 Selaginella moellendorffii HOM05D006881 ORTHO05D008423 9.0e-25 117.5 107 64.5
SEGI_11441 Sequoiadendron giganteum HOM05D006881 ORTHO05D008423 3.4e-24 115.5 110 57.3
ATR0706G047 Amborella trichopoda HOM05D006881 ORTHO05D008423 5.8e-24 114.8 106 58.5
A10p21020 Brassica napus HOM05D006881 ORTHO05D008423 3.8e-23 112.1 164 56.7
BraA10t44166Z Brassica rapa HOM05D006881 ORTHO05D008423 8.4e-23 110.9 167 58.1
Ah.13g074590 Amaranthus hybridus HOM05D006881 ORTHO05D008423 4.2e-22 108.6 126 54.0
SHI00284 Sapria himalayana HOM05D006881 ORTHO05D008423 5.5e-22 108.2 86 67.4
Mapoly0010s0048 Marchantia polymorpha HOM05D006881 ORTHO05D008423 1.0e-20 104.0 109 54.1
Pp3c15_10020 Physcomitrium patens HOM05D006881 ORTHO05D008423 8.7e-20 100.9 110 54.5
CSS0015929 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 1.5e-19 100.1 166 54.2
TWI73G0635 Tripterygium wilfordii HOM05D006881 ORTHO05D008423 5.7e-19 98.2 89 61.8
Haze_01236 Corylus avellana HOM05D006881 ORTHO05D008423 2.8e-18 95.9 80 65.0
CDE02G3907 Ceratophyllum demersum HOM05D006881 ORTHO05D008423 5.0e-15 85.1 76 61.8
BcaC04g18670 Brassica carinata HOM05D006881 ORTHO05D008423 2.5e-14 82.8 81 60.5
AagrBONN_evm.TU.Sc2ySwM_228.1971 Anthoceros agrestis HOM05D006881 ORTHO05D008423 3.2e-14 82.4 94 54.3
AUR62040384 Chenopodium quinoa HOM05D006881 ORTHO05D008423 5.5e-14 81.6 53 73.6
BcaB08g36664 Brassica carinata HOM05D006881 ORTHO05D008423 1.6e-13 80.1 157 49.7
CBR_g46646 Chara braunii HOM05D006881 ORTHO05D008423 6.7e-12 74.7 80 50.0
C09p57950 Brassica napus HOM05D006881 ORTHO05D008423 3.3e-11 72.4 50 66.0
BolC9t58662H Brassica oleracea HOM05D006881 ORTHO05D008423 3.3e-11 72.4 50 66.0
CSS0002463 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 4.3e-11 72.0 150 38.0
Nitab4.5_0000784g0080 Nicotiana tabacum HOM05D006881 ORTHO05D008423 1.7e-10 70.1 154 48.1


User provided reference genes

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