Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g01940 Coffea canephora HOM05D003821 ORTHO05D004449 6.0e-64 247.3 120 100.0
GSVIVG01017758001 Vitis vinifera HOM05D003821 ORTHO05D004449 4.4e-14 81.6 53 79.2
BcaB04g18333 Brassica carinata HOM05D003821 ORTHO05D004449 2.2e-13 79.3 50 80.0
C01p27060 Brassica napus HOM05D003821 ORTHO05D004449 3.7e-13 78.6 45 86.7
Nn3g21436 Nelumbo nucifera HOM05D000763 ORTHO05D000599 3.7e-13 78.6 45 86.7
Nitab4.5_0000191g0110 Nicotiana tabacum HOM05D003821 ORTHO05D004449 4.8e-13 78.2 47 83.0
Sp7g14190 Schrenkiella parvula HOM05D003821 ORTHO05D004449 1.4e-12 76.6 44 86.4
Rhsim02G0009100 Rhododendron simsii HOM05D003821 ORTHO05D004449 2.4e-12 75.9 44 86.4
BolC7t45268H Brassica oleracea HOM05D003821 ORTHO05D004449 3.1e-12 75.5 44 84.1
Haze_04896 Corylus avellana HOM05D003821 ORTHO05D004449 3.1e-12 75.5 44 84.1
Sabra10G0014100 Salix brachista HOM05D003821 ORTHO05D004449 3.1e-12 75.5 48 79.2
Hund05412 Selenicereus undatus HOM05D003821 ORTHO05D004449 4.1e-12 75.1 44 84.1
BraA03t14035Z Brassica rapa HOM05D003821 ORTHO05D004449 5.4e-12 74.7 43 86.0
CANSAT78G0465 Cannabis sativa HOM05D003821 ORTHO05D004449 5.4e-12 74.7 41 90.2
QL10p053326 Quercus lobata HOM05D003821 ORTHO05D004449 5.4e-12 74.7 44 81.8
QL10p054532 Quercus lobata HOM05D003821 ORTHO05D004449 5.4e-12 74.7 44 81.8
BraA01t02079Z Brassica rapa HOM05D000802 ORTHO05D013138 9.1e-12 73.9 44 88.6
Lalb_Chr15g0078581 Lupinus albus HOM05D003821 ORTHO05D004449 9.1e-12 73.9 44 81.8
MD11G1304500 Malus domestica HOM05D003821 ORTHO05D004449 9.1e-12 73.9 44 81.8
RcHm_v2.0_Chr6g0293541 Rosa chinensis HOM05D003821 ORTHO05D004449 9.1e-12 73.9 44 79.5
RcHm_v2.0_Chr4g0422231 Rosa chinensis HOM05D003821 ORTHO05D004449 1.6e-11 73.2 44 81.8
Sed0001615 Sechium edule HOM05D003821 ORTHO05D004449 1.6e-11 73.2 45 80.0
TPR.G9594 Trifolium pratense HOM05D003821 ORTHO05D004449 1.6e-11 73.2 44 81.8
BraA08t33190Z Brassica rapa HOM05D003821 ORTHO05D004449 2.0e-11 72.8 47 85.1
Lalb_Chr18g0047131 Lupinus albus HOM05D003821 ORTHO05D004449 2.0e-11 72.8 44 81.8
Gorai.004G142200 Gossypium raimondii HOM05D003821 ORTHO05D004449 2.7e-11 72.4 44 84.1
Gohir.D01G051650 Gossypium hirsutum HOM05D003821 ORTHO05D004449 3.5e-11 72.0 47 78.7
Gorai.002G124200 Gossypium raimondii HOM05D003821 ORTHO05D004449 3.5e-11 72.0 47 78.7
unitig_748.g8733 Utricularia gibba HOM05D003821 ORTHO05D004449 3.5e-11 72.0 44 81.8
Atru.chr4.2835 Acer truncatum HOM05D003821 ORTHO05D004449 4.5e-11 71.6 45 77.8
Ciclev10007067m.g Citrus clementina HOM05D003821 ORTHO05D004449 4.5e-11 71.6 44 81.8
Gohir.D08G087850 Gossypium hirsutum HOM05D003821 ORTHO05D004449 5.9e-11 71.2 59 66.1
TWI09G0102 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 5.9e-11 71.2 41 87.8
Gohir.D08G106266 Gossypium hirsutum HOM05D003821 ORTHO05D004449 7.7e-11 70.9 46 80.4
vmacro08148 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 7.7e-11 70.9 53 73.6
Medtr1g088760 Medicago truncatula HOM05D003821 ORTHO05D004449 1.0e-10 70.5 44 79.5
AL7G39490 Arabidopsis lyrata HOM05D003821 ORTHO05D004449 1.3e-10 70.1 41 82.9
AT4G15802 Arabidopsis thaliana HOM05D003821 ORTHO05D004449 1.3e-10 70.1 41 82.9
CiPaw.08G097300 Carya illinoinensis HOM05D003821 ORTHO05D004449 1.7e-10 69.7 41 82.9
MELO3C016019.2 Cucumis melo HOM05D003821 ORTHO05D004449 2.3e-10 69.3 41 82.9
Migut.G00164 Erythranthe guttata HOM05D003821 ORTHO05D004449 2.3e-10 69.3 41 85.4
Medtr7g108615 Medicago truncatula HOM05D003821 ORTHO05D004449 2.3e-10 69.3 44 77.3
BolC8t48318H Brassica oleracea HOM05D003821 ORTHO05D004449 3.8e-10 68.6 47 83.0
CARHR290310 Cardamine hirsuta HOM05D003821 ORTHO05D004449 3.8e-10 68.6 41 80.5
FvH4_2g25350 Fragaria vesca HOM05D003821 ORTHO05D004449 3.8e-10 68.6 41 78.0
TWI53G1984 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 3.8e-10 68.6 41 85.4
Ah.08g213210 Amaranthus hybridus HOM05D003821 ORTHO05D004449 5.0e-10 68.2 52 69.2
MSTRG.3917 Avicennia marina HOM05D003821 ORTHO05D004449 5.0e-10 68.2 47 76.6
Carub.0007s2585 Capsella rubella HOM05D003821 ORTHO05D004449 5.0e-10 68.2 41 80.5
Manes.15G012400 Manihot esculenta HOM05D003821 ORTHO05D004449 5.0e-10 68.2 41 82.9
Oeu027727.1 Olea europaea HOM05D003821 ORTHO05D004449 5.0e-10 68.2 41 80.5
Lj4g0002252 Lotus japonicus HOM05D003821 ORTHO05D004449 6.6e-10 67.8 50 72.0
MD03G1285000 Malus domestica HOM05D003821 ORTHO05D004449 8.6e-10 67.4 54 70.4
Nn4g25849 Nelumbo nucifera HOM05D003821 ORTHO05D004449 8.6e-10 67.4 42 76.2
THA.LOC104820264 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 8.6e-10 67.4 41 80.5
CiPaw.07G106400 Carya illinoinensis HOM05D003821 ORTHO05D004449 1.1e-09 67.0 41 78.0
FvH4_4g18020 Fragaria vesca HOM05D003821 ORTHO05D004449 1.1e-09 67.0 41 80.5
Gohir.D08G138600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.1e-09 67.0 41 82.9
Gorai.005G060300 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.5e-09 66.6 48 72.9
MSTRG.24794 Avicennia marina HOM05D003821 ORTHO05D004449 1.9e-09 66.2 40 80.0
TPR.G33980 Trifolium pratense HOM05D003821 ORTHO05D004449 1.9e-09 66.2 44 77.3
Phvul.009G247900 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 3.3e-09 65.5 41 78.0
Psat3g022560 Pisum sativum HOM05D003821 ORTHO05D004449 3.3e-09 65.5 41 78.0
Oeu026313.1 Olea europaea HOM05D003821 ORTHO05D004449 4.2e-09 65.1 41 80.5
Potri.014G131701 Populus trichocarpa HOM05D003821 ORTHO05D004449 4.2e-09 65.1 41 75.6
ATR0580G132 Amborella trichopoda HOM05D003821 ORTHO05D004449 5.5e-09 64.7 44 77.3
Gohir.A08G117600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 5.5e-09 64.7 41 80.5
CSS0020997 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 9.5e-09 63.9 43 81.4
CSS0044842 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 9.5e-09 63.9 43 81.4
CSS0048427 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 1.2e-08 63.5 43 81.4
HanXRQChr06g0169061 Helianthus annuus HOM05D003821 ORTHO05D004449 1.2e-08 63.5 47 68.1
GSVIVG01027975001 Vitis vinifera HOM05D003821 ORTHO05D004449 1.2e-08 63.5 45 75.6
CANSAT25G1361 Cannabis sativa HOM05D003821 ORTHO05D004449 2.1e-08 62.8 41 70.7
Hma1.2p1_0078F.1_g040550 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 2.1e-08 62.8 39 82.1
PGR031G0623 Punica granatum HOM05D003821 ORTHO05D004449 2.1e-08 62.8 35 88.6
Ca_10352_v3 Cicer arietinum L. HOM05D003821 ORTHO05D004449 2.8e-08 62.4 41 75.6
Gorai.N022500 Gossypium raimondii HOM05D003821 ORTHO05D004449 2.8e-08 62.4 47 74.5
Peaxi162Scf00086g00435 Petunia axillaris HOM05D003821 ORTHO05D004449 1.0e-07 60.5 47 68.1
Pp3c16_4400 Physcomitrium patens HOM05D003821 ORTHO05D004449 1.4e-07 60.1 39 82.1
Thecc.04G284600 Theobroma cacao HOM05D003821 ORTHO05D004449 1.4e-07 60.1 41 75.6
Migut.N00088 Erythranthe guttata HOM05D003821 ORTHO05D004449 2.3e-07 59.3 32 90.6
HanXRQChr01g0001301 Helianthus annuus HOM05D003821 ORTHO05D004449 4.0e-07 58.5 43 72.1
Os06g0274000 Oryza sativa ssp. japonica HOM05D003821 ORTHO05D004449 4.0e-07 58.5 37 78.4
EL10Ac7g17441 Beta vulgaris HOM05D003821 ORTHO05D004449 6.8e-07 57.8 70 50.0
Duzib138G0767 Durio zibethinus HOM05D003821 ORTHO05D004449 8.9e-07 57.4 32 87.5
BcaC06g32965 Brassica carinata HOM05D003821 ORTHO05D004449 1.2e-06 57.0 38 71.1
BcaNung00244 Brassica carinata HOM05D000802 ORTHO05D013138 1.2e-06 57.0 38 71.1
Prupe.1G136900 Prunus persica HOM05D003821 ORTHO05D004449 1.5e-06 56.6 31 90.3
Potri.008G208100 Populus trichocarpa HOM05D003821 ORTHO05D004449 2.6e-06 55.8 31 87.1
Potri.010G025000 Populus trichocarpa HOM05D003821 ORTHO05D004449 2.6e-06 55.8 31 87.1
Prupe.8G258100 Prunus persica HOM05D003821 ORTHO05D004449 3.4e-06 55.5 31 87.1
TAR365G0642 Trochodendron aralioides HOM05D003821 ORTHO05D004449 3.4e-06 55.5 32 84.4
Psat6g166600 Pisum sativum HOM05D003821 ORTHO05D004449 4.4e-06 55.1 36 75.0
THA.LOC104802574 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 4.4e-06 55.1 31 87.1
TWI79G0264 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 4.4e-06 55.1 38 68.4


User provided reference genes

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