Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g01870 Coffea canephora HOM05D007342 ORTHO05D009252 0.0e+00 1183.3 629 100.0
Dinv29744 Davidia involucrata HOM05D007342 ORTHO05D009252 2.2e-96 357.5 639 40.2
MSTRG.10096 Avicennia marina HOM05D007342 ORTHO05D009252 2.6e-89 334.0 660 38.0
Nitab4.5_0000059g0470 Nicotiana tabacum HOM05D007342 ORTHO05D009252 6.5e-85 319.3 728 35.7
Nitab4.5_0000191g0200 Nicotiana tabacum HOM05D007342 ORTHO05D009252 1.9e-84 317.8 729 35.7
Sopen01g030760 Solanum pennellii HOM05D007342 ORTHO05D009252 8.0e-83 312.4 709 36.4
Actinidia00019 Actinidia chinensis HOM05D007342 ORTHO05D009252 1.4e-82 311.6 667 36.4
PGSC0003DMG400006281 Solanum tuberosum HOM05D007342 ORTHO05D009252 1.8e-82 311.2 732 35.8
Solyc01g080760.4 Solanum lycopersicum HOM05D007342 ORTHO05D009252 1.9e-76 291.2 694 35.3
CSS0019788 Camellia sinensis var. sinensis HOM05D007342 ORTHO05D009252 3.3e-76 290.4 601 37.9
Actinidia14301 Actinidia chinensis HOM05D007342 ORTHO05D009252 3.6e-75 287.0 673 34.3
GSVIVG01017735001 Vitis vinifera HOM05D007342 ORTHO05D009252 2.9e-72 277.3 637 35.0
Peaxi162Scf01123g00234 Petunia axillaris HOM05D007342 ORTHO05D009252 3.2e-71 273.9 642 35.7
Duzib212G0754 Durio zibethinus HOM05D007342 ORTHO05D009252 1.3e-69 268.5 608 34.0
ClCG06G005120 Citrullus lanatus HOM05D007342 ORTHO05D009252 1.6e-67 261.5 656 33.8
MD13G1168100 Malus domestica HOM05D007342 ORTHO05D009252 2.8e-67 260.8 624 32.7
Cfa015389 Carpinus fangiana HOM05D007342 ORTHO05D009252 5.8e-65 253.1 617 36.0
Migut.G00157 Erythranthe guttata HOM05D007342 ORTHO05D009252 3.7e-64 250.4 647 34.0
MELO3C021329.2 Cucumis melo HOM05D007342 ORTHO05D009252 4.9e-64 250.0 653 33.4
Prupe.1G135700 Prunus persica HOM05D007342 ORTHO05D009252 1.1e-63 248.8 607 35.3
RcHm_v2.0_Chr4g0422351 Rosa chinensis HOM05D007342 ORTHO05D009252 9.2e-63 245.7 626 33.9
Gorai.006G262500 Gossypium raimondii HOM05D007342 ORTHO05D009252 6.0e-62 243.0 624 34.0
TWI53G0473 Tripterygium wilfordii HOM05D007342 ORTHO05D009252 7.8e-62 242.7 638 34.3
Haze_01197 Corylus avellana HOM05D007342 ORTHO05D009252 1.0e-61 242.3 615 34.5
Cpa.g.sc16.174 Carica papaya HOM05D007342 ORTHO05D009252 8.6e-61 239.2 624 34.1
ECA240G4261 Erigeron canadensis HOM05D007342 ORTHO05D009252 8.6e-61 239.2 624 32.5
Nn4g25834 Nelumbo nucifera HOM05D007342 ORTHO05D009252 5.6e-60 236.5 695 30.6
COL.COLO4_13866 Corchorus olitorius HOM05D007342 ORTHO05D009252 7.3e-60 236.1 612 32.0
SGA_v2.0_scaffold67G22631 Striga asiatica HOM05D007342 ORTHO05D009252 1.2e-59 235.3 616 32.5
Eucgr.B01323 Eucalyptus grandis HOM05D007342 ORTHO05D009252 2.1e-59 234.6 640 32.8
Thecc.04G285100 Theobroma cacao HOM05D007342 ORTHO05D009252 3.6e-59 233.8 607 31.6
Potri.008G222000 Populus trichocarpa HOM05D007342 ORTHO05D009252 8.1e-59 232.6 607 34.8
FvH4_4g18220 Fragaria vesca HOM05D007342 ORTHO05D009252 3.1e-58 230.7 627 34.3
FAN12G3549 Fragaria x ananassa HOM05D007342 ORTHO05D009252 3.1e-58 230.7 627 34.3
Lsat_1_v5_gn_5_56841 Lactuca sativa HOM05D007342 ORTHO05D009252 3.1e-58 230.7 619 31.8
Sabra08G0152900 Salix brachista HOM05D007342 ORTHO05D009252 2.6e-57 227.6 656 32.8
QL06p008994 Quercus lobata HOM05D007342 ORTHO05D009252 5.8e-57 226.5 599 34.1
FAN12G0202 Fragaria x ananassa HOM05D007342 ORTHO05D009252 7.5e-57 226.1 627 34.0
Gohir.D09G239700 Gossypium hirsutum HOM05D007342 ORTHO05D009252 2.9e-56 224.2 623 32.6
FAN17G1678 Fragaria x ananassa HOM05D007342 ORTHO05D009252 4.9e-56 223.4 620 33.1
Medtr4g119920 Medicago truncatula HOM05D007342 ORTHO05D009252 2.4e-55 221.1 594 34.0
PGR031G1889 Punica granatum HOM05D007342 ORTHO05D009252 2.4e-55 221.1 643 33.1
Ciclev10004639m.g Citrus clementina HOM05D007342 ORTHO05D009252 4.1e-55 220.3 610 31.1
Glyma.07G247200 Glycine max HOM05D007342 ORTHO05D009252 9.2e-55 219.2 616 31.7
Aqoxy5G00727 Aquilegia oxysepala HOM05D007342 ORTHO05D009252 1.6e-54 218.4 644 31.1
SalBow2G3523 Salvia bowleyana HOM05D007342 ORTHO05D009252 2.7e-54 217.6 643 31.1
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 4.6e-54 216.9 610 33.1
CANSAT78G2360 Cannabis sativa HOM05D007342 ORTHO05D009252 3.0e-53 214.2 612 32.5
Lj4g0010877 Lotus japonicus HOM05D007342 ORTHO05D009252 3.3e-52 210.7 647 31.2
Lalb_Chr12g0196601 Lupinus albus HOM05D007342 ORTHO05D009252 1.2e-51 208.8 629 30.0
Phvul.003G105800 Phaseolus vulgaris HOM05D007342 ORTHO05D009252 1.2e-51 208.8 629 31.5
Glyma.17G026800 Glycine max HOM05D007342 ORTHO05D009252 1.2e-49 202.2 630 30.3
DCAR_023285 Daucus carota HOM05D007342 ORTHO05D009252 5.8e-49 199.9 604 32.8
Rhsim02G0008900 Rhododendron simsii HOM05D007342 ORTHO05D009252 5.4e-47 193.4 636 32.1
AUR62020686 Chenopodium quinoa HOM05D007342 ORTHO05D009252 4.6e-46 190.3 681 30.0
TPR.G3194 Trifolium pratense HOM05D007342 ORTHO05D009252 6.0e-46 189.9 626 33.1
arahy.Tifrunner.gnm1.ann1.4CZB08 Arachis hypogaea HOM05D007342 ORTHO05D009252 1.7e-45 188.3 651 29.0
AUR62028039 Chenopodium quinoa HOM05D007342 ORTHO05D009252 1.7e-45 188.3 691 29.4
vmacro15234 Vaccinium macrocarpon HOM05D007342 ORTHO05D009252 3.9e-45 187.2 626 31.3
PSO210G2737 Papaver somniferum HOM05D007342 ORTHO05D009252 5.1e-45 186.8 624 31.1
BcaC06g33445 Brassica carinata HOM05D007342 ORTHO05D009252 1.1e-44 185.7 640 31.1
C07p47420 Brassica napus HOM05D007342 ORTHO05D009252 1.1e-44 185.7 640 31.1
BolC7t45269H Brassica oleracea HOM05D007342 ORTHO05D009252 1.1e-44 185.7 640 31.1
Carub.0007s2583 Capsella rubella HOM05D007342 ORTHO05D009252 2.5e-44 184.5 615 28.9
Sp7g14200 Schrenkiella parvula HOM05D007342 ORTHO05D009252 5.6e-44 183.3 616 30.4
Gohir.A09G238800 Gossypium hirsutum HOM05D007342 ORTHO05D009252 9.6e-44 182.6 578 31.1
Manes.03G195600 Manihot esculenta HOM05D007342 ORTHO05D009252 1.6e-43 181.8 586 30.5
THA.LOC104820266 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 1.6e-43 181.8 613 29.7
AL7G39470 Arabidopsis lyrata HOM05D007342 ORTHO05D009252 6.2e-43 179.9 613 30.3
Hund19378 Selenicereus undatus HOM05D007342 ORTHO05D009252 1.4e-42 178.7 667 29.1
Thhalv10025032m.g Eutrema salsugineum HOM05D007342 ORTHO05D009252 5.2e-42 176.8 611 29.3
BraA03t14036Z Brassica rapa HOM05D007342 ORTHO05D009252 9.0e-42 176.0 636 29.9
unitig_37.g12398 Utricularia gibba HOM05D007342 ORTHO05D009252 2.0e-41 174.9 627 32.5
Sc19g0005330 Simmondsia chinensis HOM05D007342 ORTHO05D009252 9.9e-41 172.6 611 30.3
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 1.3e-40 172.2 622 31.8
AT4G15820 Arabidopsis thaliana HOM05D007342 ORTHO05D009252 2.2e-40 171.4 569 29.9
CARHR290340 Cardamine hirsuta HOM05D007342 ORTHO05D009252 2.9e-40 171.0 555 30.6
arahy.Tifrunner.gnm1.ann1.0PW7WM Arachis hypogaea HOM05D007342 ORTHO05D009252 3.8e-40 170.6 654 28.6
CiPaw.01G148300 Carya illinoinensis HOM05D007342 ORTHO05D009252 1.1e-39 169.1 431 33.2
A03p49350 Brassica napus HOM05D007342 ORTHO05D009252 1.9e-39 168.3 600 29.0
Aa31LG10G6280 Aethionema arabicum HOM05D007342 ORTHO05D009252 8.7e-37 159.5 626 27.2
Oeu045723.1 Olea europaea HOM05D007342 ORTHO05D009252 1.5e-36 158.7 237 43.5
PSO832G2203 Papaver somniferum HOM05D007342 ORTHO05D009252 9.6e-36 156.0 500 31.2
Lj3P820T26 Lonicera japonica HOM05D007342 ORTHO05D009252 1.3e-35 155.6 441 33.3
ATR0796G152 Amborella trichopoda HOM05D007342 ORTHO05D009252 4.0e-34 150.6 724 29.0
TAR633G2120 Trochodendron aralioides HOM05D007342 ORTHO05D009252 3.4e-33 147.5 248 41.9
Atru.chr4.2846 Acer truncatum HOM05D007342 ORTHO05D009252 5.8e-33 146.7 574 28.6
CDE02G3410 Ceratophyllum demersum HOM05D007342 ORTHO05D009252 1.4e-31 142.1 209 42.1
Psat4g027440 Pisum sativum HOM05D007342 ORTHO05D009252 6.0e-30 136.7 631 30.0
Lj3P817T41 Lonicera japonica HOM05D007342 ORTHO05D009252 1.3e-27 129.0 263 38.8
Lalb_Chr07g0177731 Lupinus albus HOM05D007342 ORTHO05D009252 2.1e-27 128.3 136 51.5
CsaV3_6G022280 Cucumis sativus L. HOM05D007342 ORTHO05D009252 2.4e-26 124.8 367 32.2
Sed0007886 Sechium edule HOM05D007342 ORTHO05D009252 4.0e-26 124.0 358 30.7
BcaC06g32967 Brassica carinata HOM05D007342 ORTHO05D009252 6.9e-26 123.2 208 40.9
MBI18_g13693_MAGBIO Magnolia biondii HOM05D007342 ORTHO05D009252 2.6e-25 121.3 513 27.3
MBI18_g13694_MAGBIO Magnolia biondii HOM05D007342 ORTHO05D009252 2.6e-25 121.3 696 26.4
THA.LOC104820268 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 2.6e-25 121.3 124 53.2
Eucgr.L03117 Eucalyptus grandis HOM05D007342 ORTHO05D009252 7.1e-23 113.2 445 29.4
SEGI_31295 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 3.3e-20 104.4 217 34.1
DCAR_023500 Daucus carota HOM05D007342 ORTHO05D009252 2.1e-19 101.7 316 31.6
THA.LOC104810667 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 2.4e-18 98.2 103 52.4
THA.LOC104820435 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 1.2e-17 95.9 99 53.5
HPP92_016942 Vanilla planifolia HOM05D007342 ORTHO05D009252 4.5e-17 94.0 176 37.5
EL10Ac2g03667 Beta vulgaris HOM05D007342 ORTHO05D009252 1.1e-12 79.3 361 28.3
TAR633G1503 Trochodendron aralioides HOM05D007342 ORTHO05D009252 4.3e-12 77.4 158 36.7
Mapoly0008s0022 Marchantia polymorpha HOM05D005676 ORTHO05D007375 9.7e-12 76.3 164 34.8
HanXRQChr11g0352981 Helianthus annuus HOM05D005676 ORTHO05D007375 4.8e-11 73.9 174 30.5
SEGI_23777 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 8.2e-11 73.2 137 35.0
Pp3c12_1870 Physcomitrium patens HOM05D005676 ORTHO05D007375 1.8e-10 72.0 233 29.6
AagrBONN_evm.TU.Sc2ySwM_368.2853 Anthoceros agrestis HOM05D005676 ORTHO05D007375 2.4e-10 71.6 219 28.8
Ca_23531_v3 Cicer arietinum L. HOM05D005676 ORTHO05D007375 5.3e-10 70.5 173 33.5
AT3G61780 Arabidopsis thaliana HOM05D005676 ORTHO05D007375 1.2e-09 69.3 185 31.4
DCAR_005392 Daucus carota HOM05D005676 ORTHO05D007375 1.2e-09 69.3 173 30.6
Eucgr.D02379 Eucalyptus grandis HOM05D005676 ORTHO05D007375 2.0e-09 68.6 174 29.3
EL10Ac1g00264 Beta vulgaris HOM05D005676 ORTHO05D007375 2.6e-09 68.2 113 37.2
Thhalv10005757m.g Eutrema salsugineum HOM05D005676 ORTHO05D007375 3.4e-09 67.8 185 31.4
AL5G44340 Arabidopsis lyrata HOM05D005676 ORTHO05D007375 4.5e-09 67.4 185 30.3
arahy.Tifrunner.gnm1.ann1.FH2LCI Arachis hypogaea HOM05D005676 ORTHO05D007375 7.7e-09 66.6 113 35.4
BcaC06g32966 Brassica carinata HOM05D007342 ORTHO05D009252 7.7e-09 66.6 219 31.1
arahy.Tifrunner.gnm1.ann1.L1WQQA Arachis hypogaea HOM05D005676 ORTHO05D007375 1.3e-08 65.9 113 35.4
Hma1.2p1_0139F.1_g063260 Hydrangea macrophylla HOM05D005676 ORTHO05D007375 1.3e-08 65.9 128 34.4
BolC6t37957H Brassica oleracea HOM05D005676 ORTHO05D007375 1.7e-08 65.5 184 29.3
Carub.0005s2852 Capsella rubella HOM05D005676 ORTHO05D007375 1.7e-08 65.5 175 29.7
CBR_g23443 Chara braunii HOM05D005676 ORTHO05D007375 1.7e-08 65.5 119 31.9
PGSC0003DMG400000228 Solanum tuberosum HOM05D005676 ORTHO05D007375 1.7e-08 65.5 119 32.8
Sc01g0002640 Simmondsia chinensis HOM05D005676 ORTHO05D007375 2.2e-08 65.1 231 29.9
CDE02G4093 Ceratophyllum demersum HOM05D005676 ORTHO05D007375 3.8e-08 64.3 176 26.1
Nitab4.5_0000172g0490 Nicotiana tabacum HOM05D005676 ORTHO05D007375 5.0e-08 63.9 119 31.9
Aqoxy7G00081 Aquilegia oxysepala HOM05D005676 ORTHO05D007375 6.5e-08 63.5 182 29.1
BcaC08g45161 Brassica carinata HOM05D005676 ORTHO05D007375 6.5e-08 63.5 184 28.8
C06p27960 Brassica napus HOM05D005676 ORTHO05D007375 6.5e-08 63.5 184 28.8
Nitab4.5_0013740g0030 Nicotiana tabacum HOM05D005676 ORTHO05D007375 6.5e-08 63.5 119 31.9
SalBow6G4948 Salvia bowleyana HOM05D005676 ORTHO05D007375 6.5e-08 63.5 237 29.5
TPR.G16793 Trifolium pratense HOM05D005676 ORTHO05D007375 6.5e-08 63.5 113 37.2
Atru.chr5.673 Acer truncatum HOM05D005676 ORTHO05D007375 8.5e-08 63.2 114 35.1
CAN.G1415.28 Capsicum annuum HOM05D005676 ORTHO05D007375 8.5e-08 63.2 119 31.9
Lj3g0008614 Lotus japonicus HOM05D005676 ORTHO05D007375 8.5e-08 63.2 180 28.3
TAR636G2851 Trochodendron aralioides HOM05D005676 ORTHO05D007375 8.5e-08 63.2 114 35.1
A07p25740 Brassica napus HOM05D005676 ORTHO05D007375 1.1e-07 62.8 188 29.8
BraA07t30214Z Brassica rapa HOM05D005676 ORTHO05D007375 1.1e-07 62.8 188 29.8
Aa31LG10G15770 Aethionema arabicum HOM05D005676 ORTHO05D007375 1.4e-07 62.4 173 29.5
AUR62004498 Chenopodium quinoa HOM05D005676 ORTHO05D007375 1.4e-07 62.4 242 29.8
AUR62023455 Chenopodium quinoa HOM05D005676 ORTHO05D007375 1.4e-07 62.4 242 29.3
Lsat_1_v5_gn_3_140321 Lactuca sativa HOM05D005676 ORTHO05D007375 1.4e-07 62.4 241 26.6
MBI06_g46583_MAGBIO Magnolia biondii HOM05D005676 ORTHO05D007375 1.4e-07 62.4 119 31.1
SalBow3G4648 Salvia bowleyana HOM05D005676 ORTHO05D007375 1.4e-07 62.4 277 28.2
Sopen01g039730 Solanum pennellii HOM05D005676 ORTHO05D007375 1.4e-07 62.4 119 31.1
QL04p060782 Quercus lobata HOM05D005676 ORTHO05D007375 1.9e-07 62.0 183 30.1
CsaV3_3G008030 Cucumis sativus L. HOM05D005676 ORTHO05D007375 2.5e-07 61.6 129 34.1
THA.LOC104817362 Tarenaya hassleriana HOM05D005676 ORTHO05D007375 2.5e-07 61.6 183 30.6
CARHR172110 Cardamine hirsuta HOM05D005676 ORTHO05D007375 3.2e-07 61.2 185 29.2
Duzib268G0021 Durio zibethinus HOM05D005676 ORTHO05D007375 3.2e-07 61.2 113 33.6
Glyma.16G024100 Glycine max HOM05D005676 ORTHO05D007375 3.2e-07 61.2 113 33.6
Ah.05g179510 Amaranthus hybridus HOM05D005676 ORTHO05D007375 5.5e-07 60.5 245 29.0
Lalb_Chr17g0342721 Lupinus albus HOM05D005676 ORTHO05D007375 5.5e-07 60.5 113 32.7
Medtr8g027605 Medicago truncatula HOM05D005676 ORTHO05D007375 5.5e-07 60.5 173 29.5
Psat4g161440 Pisum sativum HOM05D005676 ORTHO05D007375 5.5e-07 60.5 113 33.6
ECA246G1832 Erigeron canadensis HOM05D000467 ORTHO05D000379 7.2e-07 60.1 264 27.3
Oeu043238.1 Olea europaea HOM05D005676 ORTHO05D007375 7.2e-07 60.1 113 31.9
PGR031G0643 Punica granatum HOM05D005676 ORTHO05D007375 7.2e-07 60.1 173 27.2
Solyc01g096010.4 Solanum lycopersicum HOM05D005676 ORTHO05D007375 7.2e-07 60.1 120 32.5
Actinidia10141 Actinidia chinensis HOM05D005676 ORTHO05D007375 9.4e-07 59.7 113 32.7
AL5G43810 Arabidopsis lyrata HOM05D005676 ORTHO05D007375 1.2e-06 59.3 113 31.0
CSS0030996 Camellia sinensis var. sinensis HOM05D005676 ORTHO05D007375 1.2e-06 59.3 113 31.9
ClCG05G000790 Citrullus lanatus HOM05D005676 ORTHO05D007375 1.2e-06 59.3 173 30.1
MELO3C006021.2 Cucumis melo HOM05D005676 ORTHO05D007375 1.2e-06 59.3 173 27.7
Nn1g00247 Nelumbo nucifera HOM05D005676 ORTHO05D007375 1.2e-06 59.3 172 27.3
Dinv32595 Davidia involucrata HOM05D005676 ORTHO05D007375 1.6e-06 58.9 115 32.2
Ah.11g044170 Amaranthus hybridus HOM05D007342 ORTHO05D009252 2.1e-06 58.5 260 29.6
MD01G1081300 Malus domestica HOM05D005676 ORTHO05D007375 2.1e-06 58.5 113 32.7
FAN10G1066 Fragaria x ananassa HOM05D005676 ORTHO05D007375 2.7e-06 58.2 233 27.0
Gorai.007G108400 Gossypium raimondii HOM05D005676 ORTHO05D007375 2.7e-06 58.2 255 27.1
RcHm_v2.0_Chr1g0359591 Rosa chinensis HOM05D005676 ORTHO05D007375 2.7e-06 58.2 233 27.0
Sp5g01590 Schrenkiella parvula HOM05D005676 ORTHO05D007375 3.6e-06 57.8 196 28.1
Cc02_g39430 Coffea canephora HOM05D005676 ORTHO05D007375 4.6e-06 57.4 219 28.8
FAN10G0710 Fragaria x ananassa HOM05D005676 ORTHO05D007375 4.6e-06 57.4 233 26.6
Cfa003798 Carpinus fangiana HOM05D005676 ORTHO05D007375 6.1e-06 57.0 173 28.3
Phvul.010G114600 Phaseolus vulgaris HOM05D005676 ORTHO05D007375 6.1e-06 57.0 232 27.2
FAN03G1248 Fragaria x ananassa HOM05D005676 ORTHO05D007375 7.9e-06 56.6 233 25.8
Gohir.A11G096900 Gossypium hirsutum HOM05D005676 ORTHO05D007375 7.9e-06 56.6 255 26.7


User provided reference genes

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