Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 0.0e+00 1800.8 876 100.0
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 0.0e+00 1247.6 851 74.1
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 0.0e+00 1244.6 884 70.8
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1242.3 864 72.1
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 0.0e+00 1239.6 887 71.9
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 0.0e+00 1229.5 905 70.8
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 0.0e+00 1224.9 907 70.7
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 0.0e+00 1216.8 871 70.1
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 0.0e+00 1211.8 877 69.7
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1210.3 858 71.8
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 0.0e+00 1210.3 921 67.6
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 0.0e+00 1207.6 857 71.5
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 0.0e+00 1206.0 840 73.7
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1206.0 868 70.3
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 0.0e+00 1206.0 862 70.3
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 0.0e+00 1204.5 890 68.7
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 0.0e+00 1204.1 868 71.2
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1203.7 868 70.3
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 0.0e+00 1202.6 898 68.3
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 0.0e+00 1194.9 854 70.4
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 0.0e+00 1189.5 838 71.4
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 0.0e+00 1187.9 855 69.2
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 0.0e+00 1184.1 895 67.2
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 0.0e+00 1183.3 916 67.4
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 0.0e+00 1182.9 858 69.8
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 0.0e+00 1178.3 909 68.1
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1177.2 871 68.4
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 0.0e+00 1166.4 870 68.2
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 0.0e+00 1165.6 896 68.4
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1164.8 875 67.8
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1161.0 865 68.8
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1158.7 865 68.7
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 0.0e+00 1157.1 846 67.8
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 0.0e+00 1155.6 889 65.8
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 0.0e+00 1154.0 865 68.6
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 0.0e+00 1147.9 884 66.0
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 0.0e+00 1145.2 884 66.6
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 0.0e+00 1140.6 868 66.7
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 0.0e+00 1138.3 1005 60.7
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 0.0e+00 1134.0 897 65.3
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1131.3 860 67.3
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1126.7 855 67.5
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 0.0e+00 1121.7 875 66.3
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 0.0e+00 1121.3 869 66.9
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 0.0e+00 1111.7 856 66.5
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 0.0e+00 1104.7 892 64.0
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 0.0e+00 1102.0 875 64.2
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1097.4 839 67.5
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1096.6 895 63.5
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 0.0e+00 1096.3 845 66.0
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1095.9 895 63.5
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1095.5 845 66.2
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 0.0e+00 1093.6 823 68.0
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 0.0e+00 1090.1 858 64.8
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 0.0e+00 1086.2 793 68.9
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1075.1 874 63.3
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 4.6e-310 1067.8 811 67.2
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 2.7e-307 1058.5 865 63.0
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 6.1e-307 1057.4 814 66.6
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 7.5e-305 1050.4 948 59.9
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 1.7e-304 1049.3 872 63.9
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 2.8e-304 1048.5 863 62.5
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 6.3e-304 1047.3 855 63.5
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 4.1e-303 1044.6 814 66.6
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 2.7e-302 1042.0 867 62.4
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 3.5e-302 1041.6 871 63.3
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 5.9e-302 1040.8 886 62.0
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 1.3e-301 1039.6 859 63.9
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 6.6e-301 1037.3 835 63.6
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 1.9e-300 1035.8 858 63.1
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 2.8e-299 1031.9 854 61.8
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 1.2e-297 1026.5 861 63.3
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 7.5e-297 1023.8 838 64.0
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 3.9e-293 1011.5 870 62.4
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 3.1e-290 1001.9 975 56.6
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 1.4e-287 993.0 862 59.7
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 1.7e-280 969.5 836 60.8
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 1.9e-279 966.1 837 60.8
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 3.2e-279 965.3 836 60.2
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 2.3e-277 959.1 838 60.0
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 2.3e-277 959.1 844 60.1
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 3.6e-275 951.8 881 57.7
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 4.9e-272 941.4 846 59.5
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 5.4e-271 937.9 835 59.8
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 5.4e-271 937.9 835 59.8
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 5.4e-271 937.9 853 58.9
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 3.9e-269 931.8 835 59.2
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 1.5e-268 929.9 835 58.8
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 1.1e-266 923.7 862 58.0
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 1.9e-263 912.9 834 58.3
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 3.9e-261 905.2 843 57.5
Hund20553 Selenicereus undatus HOM05D005283 ORTHO05D006769 2.2e-256 889.4 749 61.8
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 3.1e-242 842.4 768 59.2
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 3.8e-240 835.5 848 55.0
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 1.2e-233 813.9 766 59.1
HPP92_002145 Vanilla planifolia HOM05D005283 ORTHO05D006769 2.5e-215 753.1 719 57.3
GSVIVG01017732001 Vitis vinifera HOM05D005283 ORTHO05D006769 1.8e-197 693.7 497 72.6
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 5.2e-197 692.2 877 47.8
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.4e-194 684.1 912 45.6
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.7e-192 677.2 921 45.3
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 3.8e-184 649.4 398 78.9
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 2.0e-169 600.5 369 78.6
Pp3c16_9230 Physcomitrium patens HOM05D005283 ORTHO05D006769 7.8e-169 598.6 828 44.4
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 1.7e-168 597.4 413 72.4
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 3.0e-160 570.1 620 50.8
Lj6C677T9 Lonicera japonica HOM05D005283 ORTHO05D006769 8.9e-157 558.5 489 62.4
Actinidia40274 Actinidia chinensis HOM05D005283 ORTHO05D006769 2.4e-149 533.9 428 65.7
TAR633G1039 Trochodendron aralioides HOM05D005283 ORTHO05D006769 8.7e-128 462.2 367 65.9
AUR62042850 Chenopodium quinoa HOM05D005283 ORTHO05D006769 3.8e-123 446.8 491 51.1
TAR633G2729 Trochodendron aralioides HOM05D005283 ORTHO05D006769 4.3e-111 406.8 275 69.8
unitig_748.g8731 Utricularia gibba HOM05D005283 ORTHO05D006769 1.5e-95 355.1 373 53.9
SEGI_38162 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.0e-91 342.4 557 40.2
SEGI_40593 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.0e-91 342.4 557 40.2
unitig_748.g8730 Utricularia gibba HOM05D005283 ORTHO05D006769 2.0e-87 328.2 283 59.0
GSVIVG01017731001 Vitis vinifera HOM05D005283 ORTHO05D006769 5.9e-84 316.6 175 87.4
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 3.4e-79 300.8 372 47.3
PRCOL_00005501 Prasinoderma coloniale HOM05D005283 ORTHO05D006769 2.4e-77 294.7 879 29.8
TAR633G1238 Trochodendron aralioides HOM05D005283 ORTHO05D006769 1.0e-75 289.3 151 91.4
Actinidia26773 Actinidia chinensis HOM05D005283 ORTHO05D006769 4.0e-72 277.3 248 60.9
HPP92_002144 Vanilla planifolia HOM05D005283 ORTHO05D006769 1.0e-67 262.7 164 79.3
FAN07G0879 Fragaria x ananassa HOM05D005283 ORTHO05D006769 8.9e-64 249.6 145 84.1
SEGI_08317 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 9.2e-61 239.6 174 68.4
SEGI_24032 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 4.7e-49 200.7 117 72.6
SEGI_35628 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.1e-48 199.5 317 37.2
Mapoly0037s0064 Marchantia polymorpha HOM05D005283 ORTHO05D006769 1.7e-46 192.2 195 46.7
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 1.1e-37 162.9 186 48.9
MCO04G464 Micromonas commoda HOM05D005283 ORTHO05D006769 2.1e-28 132.1 314 31.2
BolC4t27184H Brassica oleracea HOM05D005283 ORTHO05D006769 1.6e-25 122.5 129 48.8
A04p20740 Brassica napus HOM05D005283 ORTHO05D006769 7.6e-23 113.6 153 40.5
Cpa.g.sc66.37 Carica papaya HOM05D005283 ORTHO05D006769 6.0e-20 104.0 94 63.8
C04p56580 Brassica napus HOM05D005283 ORTHO05D006769 5.3e-16 90.9 129 40.3
AUR62038887 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.7e-14 85.9 82 54.9
BcaC05g28381 Brassica carinata HOM05D005283 ORTHO05D021637 2.9e-14 85.1 58 62.1
Cfa001632 Carpinus fangiana HOM05D005283 ORTHO05D006769 3.8e-14 84.7 219 28.8
AUR62005650 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.5e-13 82.0 55 69.1
AUR62010442 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.5e-13 82.0 55 69.1
AUR62011828 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.5e-13 82.0 55 69.1
AUR62024534 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.5e-13 82.0 55 69.1
AUR62024696 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.5e-13 82.0 55 69.1
AUR62029074 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.5e-13 82.0 55 69.1
AUR62031767 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.5e-13 82.0 55 69.1
AUR62033912 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.5e-13 82.0 55 69.1
AUR62035885 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.5e-13 82.0 55 69.1
AUR62035966 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.5e-13 82.0 55 69.1
AUR62002595 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.2e-13 81.6 55 69.1
BcaC02g08264 Brassica carinata HOM05D005283 ORTHO05D006769 2.7e-12 78.6 118 39.8
HanXRQChr14g0449221 Helianthus annuus HOM05D005283 ORTHO05D006769 2.7e-12 78.6 72 59.7
HanXRQChr12g0372601 Helianthus annuus HOM05D005283 ORTHO05D006769 3.9e-11 74.7 68 60.3
Cpa.g.c37401 Carica papaya HOM05D005283 ORTHO05D006769 7.4e-10 70.5 33 90.9


User provided reference genes

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