Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g01650 Coffea canephora HOM05D007614 ORTHO05D009538 0.0e+00 2664.4 1437 100.0
Dinv29737 Davidia involucrata HOM05D007614 ORTHO05D009538 0.0e+00 1520.4 1428 58.5
Oeu006410.1 Olea europaea HOM05D007614 ORTHO05D009538 0.0e+00 1509.2 1439 59.1
CSS0029892 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 0.0e+00 1497.3 1430 58.0
TAR365G0799 Trochodendron aralioides HOM05D007614 ORTHO05D009538 0.0e+00 1496.5 1437 57.1
QL06p010082 Quercus lobata HOM05D007614 ORTHO05D009538 0.0e+00 1483.4 1438 57.4
Nitab4.5_0002628g0040 Nicotiana tabacum HOM05D007614 ORTHO05D009538 0.0e+00 1476.8 1428 57.0
CSS0000522 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 0.0e+00 1473.4 1430 57.5
Peaxi162Scf00065g01533 Petunia axillaris HOM05D007614 ORTHO05D009538 0.0e+00 1473.0 1443 56.0
SalBow2G0719 Salvia bowleyana HOM05D007614 ORTHO05D009538 0.0e+00 1454.1 1349 58.1
Sopen01g028150 Solanum pennellii HOM05D007614 ORTHO05D009538 0.0e+00 1425.2 1342 58.0
Haze_01174 Corylus avellana HOM05D007614 ORTHO05D009538 0.0e+00 1417.5 1438 55.5
Solyc01g066610.4 Solanum lycopersicum HOM05D007614 ORTHO05D009538 0.0e+00 1414.4 1342 57.7
SGA_v2.0_scaffold67G22611 Striga asiatica HOM05D007614 ORTHO05D009538 0.0e+00 1397.1 1466 54.6
Atru.chr6.1993 Acer truncatum HOM05D007614 ORTHO05D009538 0.0e+00 1395.9 1341 57.5
Duzib151G0258 Durio zibethinus HOM05D007614 ORTHO05D009538 0.0e+00 1393.6 1348 56.3
Nitab4.5_0000513g0110 Nicotiana tabacum HOM05D007614 ORTHO05D009538 0.0e+00 1385.5 1430 55.5
MD13G1166500 Malus domestica HOM05D007614 ORTHO05D009538 0.0e+00 1384.0 1443 53.6
GSVIVG01035126001 Vitis vinifera HOM05D007614 ORTHO05D009538 0.0e+00 1376.7 1205 60.7
RcHm_v2.0_Chr4g0423071 Rosa chinensis HOM05D007614 ORTHO05D009538 0.0e+00 1376.3 1429 54.3
Ciclev10004153m.g Citrus clementina HOM05D007614 ORTHO05D009538 0.0e+00 1372.1 1336 56.6
Gorai.006G076700 Gossypium raimondii HOM05D007614 ORTHO05D009538 0.0e+00 1364.4 1340 56.5
CANSAT78G1530 Cannabis sativa HOM05D007614 ORTHO05D009538 0.0e+00 1340.1 1340 55.1
FAN07G2176 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1339.7 1438 53.3
Potri.010G011800 Populus trichocarpa HOM05D007614 ORTHO05D009538 0.0e+00 1332.0 1433 52.5
Nn3g21526 Nelumbo nucifera HOM05D007614 ORTHO05D009538 0.0e+00 1329.7 1342 54.3
FAN12G3001 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1325.8 1438 52.7
PGR031G0733 Punica granatum HOM05D007614 ORTHO05D009538 0.0e+00 1321.2 1436 51.4
Cfa015415 Carpinus fangiana HOM05D007614 ORTHO05D009538 0.0e+00 1318.9 1256 56.8
FAN12G0400 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1318.5 1438 52.7
TWI73G0642 Tripterygium wilfordii HOM05D007614 ORTHO05D009538 0.0e+00 1313.9 1332 55.2
MBI19_g34788_MAGBIO Magnolia biondii HOM05D007614 ORTHO05D009538 0.0e+00 1310.4 1451 52.3
CiPaw.02G080700 Carya illinoinensis HOM05D007614 ORTHO05D009538 0.0e+00 1310.0 1250 55.4
Sabra10G0007500 Salix brachista HOM05D007614 ORTHO05D009538 0.0e+00 1303.9 1434 52.6
COL.COLO4_37910 Corchorus olitorius HOM05D007614 ORTHO05D009538 0.0e+00 1299.3 1428 52.2
Lj3C822G9 Lonicera japonica HOM05D007614 ORTHO05D009538 0.0e+00 1290.4 1239 57.7
Aqoxy2G02920 Aquilegia oxysepala HOM05D007614 ORTHO05D009538 0.0e+00 1277.3 1446 50.6
PGSC0003DMG400011332 Solanum tuberosum HOM05D007614 ORTHO05D009538 0.0e+00 1266.9 1237 56.4
Sc13g0003320 Simmondsia chinensis HOM05D007614 ORTHO05D009538 0.0e+00 1257.7 1429 49.1
PSO407G0339 Papaver somniferum HOM05D007614 ORTHO05D009538 0.0e+00 1255.4 1451 50.7
Lsat_1_v5_gn_6_96381 Lactuca sativa HOM05D007614 ORTHO05D009538 0.0e+00 1218.0 1329 52.0
FvH4_4g18510 Fragaria vesca HOM05D007614 ORTHO05D009538 0.0e+00 1212.6 1239 53.8
FAN17G0278 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1210.3 1239 53.6
THA.LOC104827336 Tarenaya hassleriana HOM05D007614 ORTHO05D009538 0.0e+00 1208.4 1440 47.8
Thhalv10003518m.g Eutrema salsugineum HOM05D007614 ORTHO05D009538 0.0e+00 1192.2 1339 50.0
AT5G49110 Arabidopsis thaliana HOM05D007614 ORTHO05D009538 0.0e+00 1177.2 1338 49.4
BcaB07g34217 Brassica carinata HOM05D007614 ORTHO05D009538 0.0e+00 1174.8 1347 49.7
AL8G22620 Arabidopsis lyrata HOM05D007614 ORTHO05D009538 0.0e+00 1170.2 1335 49.2
CARHR182630 Cardamine hirsuta HOM05D007614 ORTHO05D009538 0.0e+00 1167.5 1349 49.3
A02p37890 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1165.2 1346 49.3
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1161.0 1337 48.8
BolC2t11775H Brassica oleracea HOM05D007614 ORTHO05D009538 0.0e+00 1160.6 1338 48.8
BraA02t08773Z Brassica rapa HOM05D007614 ORTHO05D009538 0.0e+00 1159.8 1364 49.0
DCAR_027058 Daucus carota HOM05D007614 ORTHO05D009538 0.0e+00 1131.3 1124 55.7
ECA240G3304 Erigeron canadensis HOM05D007614 ORTHO05D009538 0.0e+00 1108.2 1168 52.7
Manes.03G197500 Manihot esculenta HOM05D007614 ORTHO05D009538 4.7e-304 1048.5 1146 52.5
Prupe.1G132900 Prunus persica HOM05D007614 ORTHO05D009538 4.0e-303 1045.4 1104 53.7
BcaC03g17700 Brassica carinata HOM05D007614 ORTHO05D009538 6.7e-303 1044.6 1340 45.8
Thecc.04G287600 Theobroma cacao HOM05D007614 ORTHO05D009538 3.6e-296 1022.3 1046 53.9
Eucgr.B01588 Eucalyptus grandis HOM05D007614 ORTHO05D009538 8.3e-293 1011.1 1135 50.4
ATR0796G125 Amborella trichopoda HOM05D007614 ORTHO05D009538 3.2e-289 999.2 1357 44.6
Hma1.2p1_1807F.1_g303400 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 9.8e-286 987.6 866 61.9
Cpa.g.sc16.197 Carica papaya HOM05D007614 ORTHO05D009538 2.8e-285 986.1 1048 54.1
Gohir.A09G063000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 2.3e-279 966.5 952 55.1
Gohir.D09G062000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 5.7e-278 961.8 953 55.3
Hma1.2p1_0804F.1_g220930 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 4.7e-272 942.2 857 60.3
SEGI_15090 Sequoiadendron giganteum HOM05D007614 ORTHO05D009538 1.7e-261 907.1 1273 43.1
HPP92_013726 Vanilla planifolia HOM05D007614 ORTHO05D009538 1.6e-259 900.6 1336 41.4
Migut.G00138 Erythranthe guttata HOM05D007614 ORTHO05D009538 9.9e-246 854.7 721 64.1
Zm00001eb016350 Zea mays HOM05D007614 ORTHO05D009538 1.1e-231 808.1 1245 40.4
CAN.G421.11 Capsicum annuum HOM05D007614 ORTHO05D009538 3.5e-219 766.5 905 50.4
Actinidia00005 Actinidia chinensis HOM05D007614 ORTHO05D009538 4.2e-212 743.0 720 57.6
CDE01G0153 Ceratophyllum demersum HOM05D007614 ORTHO05D009538 3.9e-210 736.5 1459 35.2
BcaC03g17696 Brassica carinata HOM05D007614 ORTHO05D009538 9.4e-204 715.3 979 45.9
HanXRQChr03g0089461 Helianthus annuus HOM05D007614 ORTHO05D009538 3.9e-194 683.3 636 59.1
Pp3c13_17960 Physcomitrium patens HOM05D007614 ORTHO05D009538 4.8e-184 649.8 1396 33.8
Mapoly0051s0073 Marchantia polymorpha HOM05D007614 ORTHO05D009538 3.5e-182 643.7 1401 33.9
AagrBONN_evm.TU.Sc2ySwM_344.1704 Anthoceros agrestis HOM05D007614 ORTHO05D009538 2.0e-174 617.8 1343 33.4
AagrBONN_evm.TU.Sc2ySwM_344.1702 Anthoceros agrestis HOM05D007614 ORTHO05D009538 1.0e-173 615.5 1340 33.4
Migut.G00137 Erythranthe guttata HOM05D007614 ORTHO05D009538 9.2e-135 486.1 594 48.7
MSTRG.3900 Avicennia marina HOM05D007614 ORTHO05D009538 2.7e-126 458.0 490 52.9
Cc01_g15100 Coffea canephora HOM05D007614 ORTHO05D009538 3.0e-117 427.9 275 97.5
CBR_g12376 Chara braunii HOM05D007614 ORTHO05D009538 4.0e-106 391.0 1263 27.6
BcaC03g17697 Brassica carinata HOM05D007614 ORTHO05D009538 1.7e-80 305.8 314 50.6
BcaB01g01537 Brassica carinata HOM05D007614 ORTHO05D009538 5.5e-79 300.8 349 51.9
HanXRQChr03g0089481 Helianthus annuus HOM05D007614 ORTHO05D009538 3.3e-76 291.6 283 54.8
CAN.G421.12 Capsicum annuum HOM05D007614 ORTHO05D009538 1.0e-64 253.4 243 56.8
Cpa.g.c41899 Carica papaya HOM05D007614 ORTHO05D009538 1.9e-63 249.2 280 49.6
Actinidia14288 Actinidia chinensis HOM05D007614 ORTHO05D009538 2.1e-38 166.0 120 73.3
Eucgr.B01587 Eucalyptus grandis HOM05D007614 ORTHO05D009538 3.6e-38 165.2 212 45.3
HanXRQChr03g0089471 Helianthus annuus HOM05D007614 ORTHO05D009538 1.2e-33 150.2 293 38.2
Actinidia27756 Actinidia chinensis HOM05D007614 ORTHO05D009538 7.3e-31 141.0 104 72.1
BcaB04g20478 Brassica carinata HOM05D007614 ORTHO05D009538 3.5e-25 122.1 135 48.1
Zm00001eb167500 Zea mays HOM05D000563 ORTHO05D009538 1.5e-12 80.1 113 39.8
Os03g0341200 Oryza sativa ssp. japonica HOM05D007614 ORTHO05D009538 9.9e-12 77.4 161 35.4
Actinidia14287 Actinidia chinensis HOM05D065619 ORTHO05D037991 2.2e-11 76.3 86 51.2
Cre07.g314700 Chlamydomonas reinhardtii HOM05D058327 ORTHO05D009538 5.4e-10 71.6 277 25.3
Os05g0314700 Oryza sativa ssp. japonica HOM05D007614 ORTHO05D009538 7.3e-07 61.2 94 41.5


User provided reference genes

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