Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 2.3e-94 349.0 189 100.0
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 3.9e-57 225.3 194 61.9
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 6.6e-57 224.6 198 68.2
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 8.6e-57 224.2 194 63.9
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 8.6e-57 224.2 201 69.7
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 8.6e-57 224.2 200 64.5
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 1.9e-56 223.0 203 61.6
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 1.2e-55 220.3 194 63.9
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 2.8e-55 219.2 194 60.8
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 4.7e-55 218.4 201 61.2
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 8.1e-55 217.6 193 65.8
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 3.1e-54 215.7 192 60.9
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 5.2e-54 214.9 190 63.2
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 6.8e-54 214.5 198 61.1
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 6.8e-54 214.5 197 64.0
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 8.9e-54 214.2 196 62.2
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 1.5e-53 213.4 198 61.6
Medtr2g435810 Medicago truncatula HOM05D005099 ORTHO05D006087 2.6e-53 212.6 191 60.7
Medtr2g436150 Medicago truncatula HOM05D005099 ORTHO05D006087 2.6e-53 212.6 191 60.7
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 4.4e-53 211.8 193 59.1
Glyma.09G042500 Glycine max HOM05D005099 ORTHO05D006087 9.9e-53 210.7 192 59.4
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 2.2e-52 209.5 190 61.6
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 4.9e-52 208.4 190 63.2
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 6.4e-52 208.0 193 60.6
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 1.4e-51 206.8 205 56.6
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 1.9e-51 206.5 197 59.4
Glyma.15G150400 Glycine max HOM05D005099 ORTHO05D006087 3.2e-51 205.7 194 57.2
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 4.1e-51 205.3 189 58.7
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 4.1e-51 205.3 191 58.6
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 9.2e-51 204.1 199 60.8
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 1.6e-50 203.4 193 63.2
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.6e-50 203.4 193 63.2
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.6e-50 203.4 193 63.2
MD16G1164800 Malus domestica HOM05D005099 ORTHO05D006087 2.1e-50 203.0 193 66.8
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 2.1e-50 203.0 193 58.0
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 2.1e-50 203.0 190 63.7
Prupe.1G124100 Prunus persica HOM05D005099 ORTHO05D006087 4.6e-50 201.8 191 63.9
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 7.8e-50 201.1 205 56.6
Sopen01g028090 Solanum pennellii HOM05D005099 ORTHO05D006087 7.8e-50 201.1 191 64.4
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 1.0e-49 200.7 190 58.9
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.7e-49 199.9 196 64.3
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 3.0e-49 199.1 203 57.6
Solyc01g066440.3 Solanum lycopersicum HOM05D005099 ORTHO05D006087 5.1e-49 198.4 194 63.9
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 6.6e-49 198.0 192 58.3
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 8.6e-49 197.6 195 58.5
RcHm_v2.0_Chr4g0423321 Rosa chinensis HOM05D005099 ORTHO05D006087 1.1e-48 197.2 196 61.7
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 1.1e-48 197.2 169 63.3
FAN17G2615 Fragaria x ananassa HOM05D005099 ORTHO05D006087 2.5e-48 196.1 192 63.5
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 7.3e-48 194.5 199 58.3
Nitab4.5_0003767g0020 Nicotiana tabacum HOM05D005099 ORTHO05D006087 7.3e-48 194.5 196 63.3
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 7.3e-48 194.5 190 63.2
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 2.1e-47 193.0 206 57.3
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 2.8e-47 192.6 192 59.4
CARHR081450 Cardamine hirsuta HOM05D005099 ORTHO05D006087 2.8e-47 192.6 193 56.5
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 2.8e-47 192.6 206 54.4
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 3.6e-47 192.2 192 60.9
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 8.1e-47 191.0 192 59.4
arahy.Tifrunner.gnm1.ann1.2F59RJ Arachis hypogaea HOM05D005099 ORTHO05D006087 2.4e-46 189.5 193 57.0
arahy.Tifrunner.gnm1.ann1.2UKM1V Arachis hypogaea HOM05D005099 ORTHO05D006087 3.1e-46 189.1 193 57.0
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 5.2e-46 188.3 195 56.4
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 5.2e-46 188.3 187 58.3
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.2e-45 187.2 193 63.2
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 1.5e-45 186.8 195 55.9
Sabra10G0006200 Salix brachista HOM05D005099 ORTHO05D006087 2.6e-45 186.0 196 55.1
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 4.4e-45 185.3 196 63.3
Oeu053996.1 Olea europaea HOM05D005099 ORTHO05D006087 7.6e-45 184.5 185 64.9
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 1.7e-44 183.3 198 54.5
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 6.4e-44 181.4 186 58.1
Lalb_Chr20g0117371 Lupinus albus HOM05D005099 ORTHO05D006087 8.4e-44 181.0 192 58.9
Sp3g05800 Schrenkiella parvula HOM05D005099 ORTHO05D006087 8.4e-44 181.0 192 58.3
THA.LOC104818909 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 8.4e-44 181.0 214 55.6
Gohir.D02G055600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 5.4e-43 178.3 190 55.3
Gorai.005G061600 Gossypium raimondii HOM05D005099 ORTHO05D006087 5.4e-43 178.3 190 55.3
Lj6g0002623 Lotus japonicus HOM05D005099 ORTHO05D006087 5.4e-43 178.3 191 56.5
Psat1g155760 Pisum sativum HOM05D005099 ORTHO05D006087 7.1e-43 177.9 198 59.1
Gohir.A02G050700 Gossypium hirsutum HOM05D005099 ORTHO05D006087 9.2e-43 177.6 190 55.3
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 3.5e-42 175.6 191 55.0
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 6.0e-42 174.9 190 53.7
Aqoxy2G02900 Aquilegia oxysepala HOM05D005099 ORTHO05D006087 7.8e-42 174.5 191 56.0
MD13G1165200 Malus domestica HOM05D005099 ORTHO05D006087 1.7e-41 173.3 197 58.9
Sc13g0003250 Simmondsia chinensis HOM05D005099 ORTHO05D006087 1.9e-40 169.9 200 54.5
SGA_v2.0_scaffold67G22601 Striga asiatica HOM05D005099 ORTHO05D006087 2.5e-40 169.5 189 56.1
AL3G17960 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 5.6e-40 168.3 195 52.8
BNapus_Darmor_BZH_scaffold_117p00120 Brassica napus HOM05D005099 ORTHO05D006087 5.6e-40 168.3 195 58.5
BraA01t04411Z Brassica rapa HOM05D005099 ORTHO05D006087 5.6e-40 168.3 195 58.5
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 1.2e-39 167.2 191 54.5
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 1.2e-39 167.2 190 55.3
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 1.6e-39 166.8 201 52.2
Hund24882 Selenicereus undatus HOM05D005099 ORTHO05D006087 1.6e-39 166.8 201 52.7
Eucgr.H03959 Eucalyptus grandis HOM05D005099 ORTHO05D006087 2.8e-39 166.0 213 48.8
Gohir.D09G238500 Gossypium hirsutum HOM05D005099 ORTHO05D006087 3.6e-39 165.6 198 54.5
BcaC09g47923 Brassica carinata HOM05D005099 ORTHO05D006087 6.2e-39 164.9 194 57.2
BolC1t05583H Brassica oleracea HOM05D005099 ORTHO05D006087 6.2e-39 164.9 194 57.2
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 8.1e-39 164.5 205 51.7
Lsat_1_v5_gn_3_21720 Lactuca sativa HOM05D005099 ORTHO05D006087 3.1e-38 162.5 195 56.4
Thhalv10021591m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 5.3e-38 161.8 195 54.4
Gohir.A09G237600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.2e-37 160.6 212 52.8
ECA246G4673 Erigeron canadensis HOM05D005099 ORTHO05D006087 2.6e-37 159.5 199 53.8
Sp2g19520 Schrenkiella parvula HOM05D005099 ORTHO05D006087 7.6e-37 157.9 198 51.5
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 1.7e-36 156.8 188 50.0
Aa31LG5G17420 Aethionema arabicum HOM05D005099 ORTHO05D006087 2.9e-36 156.0 194 47.9
Thhalv10004959m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 6.4e-36 154.8 214 50.5
Carub.0003s0637 Capsella rubella HOM05D005099 ORTHO05D006087 9.3e-35 151.0 192 51.0
Gorai.006G261200 Gossypium raimondii HOM05D005099 ORTHO05D006087 9.3e-35 151.0 213 47.4
PSO170G0513 Papaver somniferum HOM05D005099 ORTHO05D006087 1.0e-33 147.5 207 49.8
Sed0015120 Sechium edule HOM05D005099 ORTHO05D006087 1.0e-33 147.5 189 47.6
BcaNung02585 Brassica carinata HOM05D005099 ORTHO05D006087 3.0e-33 146.0 224 48.2
BolC7t44497H Brassica oleracea HOM05D005099 ORTHO05D006087 3.0e-33 146.0 224 48.2
BraA06t26768Z Brassica rapa HOM05D005099 ORTHO05D006087 5.1e-33 145.2 204 50.5
A02p37910 Brassica napus HOM05D005099 ORTHO05D006087 1.5e-32 143.7 184 52.7
arahy.Tifrunner.gnm1.ann1.H54SCY Arachis hypogaea HOM05D005099 ORTHO05D006087 4.3e-32 142.1 194 45.9
DCAR_002480 Daucus carota HOM05D005099 ORTHO05D006087 9.6e-32 141.0 195 45.6
BraA02t08775Z Brassica rapa HOM05D005099 ORTHO05D006087 1.3e-31 140.6 184 51.6
arahy.Tifrunner.gnm1.ann1.L8YWMY Arachis hypogaea HOM05D005099 ORTHO05D006087 2.1e-31 139.8 194 45.4
BcaC03g17704 Brassica carinata HOM05D005099 ORTHO05D006087 2.1e-31 139.8 185 52.4
C02p57110 Brassica napus HOM05D005099 ORTHO05D006087 2.1e-31 139.8 185 52.4
BolC2t11783H Brassica oleracea HOM05D005099 ORTHO05D006087 2.1e-31 139.8 185 52.4
BcaC06g30711 Brassica carinata HOM05D005099 ORTHO05D006087 6.2e-31 138.3 230 46.5
Migut.G00130 Erythranthe guttata HOM05D005099 ORTHO05D006087 1.1e-30 137.5 193 46.1
HanXRQChr06g0173741 Helianthus annuus HOM05D005099 ORTHO05D006087 3.1e-30 136.0 190 47.9
C07p39730 Brassica napus HOM05D005099 ORTHO05D006087 4.0e-30 135.6 211 48.3
Cpa.g.sc50.167 Carica papaya HOM05D005099 ORTHO05D006087 1.2e-29 134.0 129 57.4
A06p38540 Brassica napus HOM05D005099 ORTHO05D006087 7.6e-29 131.3 227 44.9
CARHR182490 Cardamine hirsuta HOM05D005099 ORTHO05D006087 9.9e-29 131.0 200 45.5
BcaB07g34138 Brassica carinata HOM05D005099 ORTHO05D006087 3.8e-28 129.0 184 49.5
AT5G49170 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 1.1e-27 127.5 211 44.5
AL8G22700 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 3.5e-26 122.5 206 42.7
SHI00249 Sapria himalayana HOM05D005099 ORTHO05D006087 2.3e-25 119.8 178 43.3
GSVIVG01035110001 Vitis vinifera HOM05D005099 ORTHO05D006087 2.3e-25 119.8 79 75.9
Carub.0008s0899 Capsella rubella HOM05D005099 ORTHO05D006087 5.1e-25 118.6 210 47.1
Nitab4.5_0011001g0010 Nicotiana tabacum HOM05D005099 ORTHO05D006087 2.5e-24 116.3 192 40.6
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 1.1e-22 110.9 189 40.2
MD13G1165100 Malus domestica HOM05D005099 ORTHO05D006087 9.0e-22 107.8 150 54.0
Sc19g0005440 Simmondsia chinensis HOM05D005099 ORTHO05D006087 2.6e-21 106.3 183 42.1
Sopen05g032840 Solanum pennellii HOM05D005099 ORTHO05D006087 4.5e-21 105.5 192 37.5
DCAR_023299 Daucus carota HOM05D005099 ORTHO05D006087 7.6e-21 104.8 194 43.8
Nn7g36563 Nelumbo nucifera HOM05D005099 ORTHO05D006087 7.6e-21 104.8 113 50.4
Oeu035687.1 Olea europaea HOM05D005099 ORTHO05D006087 7.6e-21 104.8 198 38.4
HPP92_011860 Vanilla planifolia HOM05D005099 ORTHO05D006087 1.0e-17 94.4 184 40.8
Lj6P680T81 Lonicera japonica HOM05D005099 ORTHO05D006087 1.3e-17 94.0 60 76.7
Nitab4.5_0001097g0130 Nicotiana tabacum HOM05D005099 ORTHO05D006087 2.3e-17 93.2 164 36.0
Lalb_Chr15g0086051 Lupinus albus HOM05D005099 ORTHO05D006087 6.7e-17 91.7 82 57.3
BcaC06g30713 Brassica carinata HOM05D005099 ORTHO05D006087 9.6e-16 87.8 66 68.2
Lalb_Chr10g0101091 Lupinus albus HOM05D008031 ORTHO05D010063 2.2e-12 76.6 189 29.1
Actinidia00002 Actinidia chinensis HOM05D005099 ORTHO05D006087 2.9e-12 76.3 44 77.3
GSVIVG01016662001 Vitis vinifera HOM05D008031 ORTHO05D010063 3.2e-11 72.8 189 30.7
Phvul.010G122700 Phaseolus vulgaris HOM05D008031 ORTHO05D010063 1.6e-10 70.5 188 34.0
CDE02G1545 Ceratophyllum demersum HOM05D006941 ORTHO05D008361 3.5e-10 69.3 161 42.9
Nn4g25860 Nelumbo nucifera HOM05D005099 ORTHO05D006087 3.5e-10 69.3 96 55.2
Atru.chr1.4165 Acer truncatum HOM05D008031 ORTHO05D010063 7.9e-10 68.2 191 30.4
Actinidia21841 Actinidia chinensis HOM05D008031 ORTHO05D010063 7.9e-10 68.2 190 32.1
Manes.04G151400 Manihot esculenta HOM05D008031 ORTHO05D010063 1.3e-09 67.4 188 30.3
Oeu019510.1 Olea europaea HOM05D008031 ORTHO05D010063 2.3e-09 66.6 190 30.0
Aqoxy7G04192 Aquilegia oxysepala HOM05D008031 ORTHO05D010063 3.0e-09 66.2 196 30.6
MBI19_g32875_MAGBIO Magnolia biondii HOM05D008031 ORTHO05D010063 3.0e-09 66.2 193 30.6
Actinidia24421 Actinidia chinensis HOM05D001728 ORTHO05D004321 6.7e-09 65.1 189 31.7
TAR626G1534 Trochodendron aralioides HOM05D008031 ORTHO05D010063 1.9e-08 63.5 188 30.3
Thecc.06G130800 Theobroma cacao HOM05D008031 ORTHO05D010063 3.3e-08 62.8 191 31.4
Glyma.07G046300 Glycine max HOM05D008031 ORTHO05D010063 4.3e-08 62.4 190 30.0
VMungo0331G1222 Vigna mungo HOM05D008031 ORTHO05D010063 4.3e-08 62.4 186 31.7
CSS0025062 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004321 5.7e-08 62.0 194 30.9
Atru.chr1.4161 Acer truncatum HOM05D008031 ORTHO05D010063 7.4e-08 61.6 192 28.6
COL.COLO4_30875 Corchorus olitorius HOM05D008031 ORTHO05D010063 7.4e-08 61.6 193 32.1
Lj3g0013752 Lotus japonicus HOM05D008031 ORTHO05D010063 7.4e-08 61.6 191 27.7
CiPaw.02G130600 Carya illinoinensis HOM05D008031 ORTHO05D010063 1.3e-07 60.8 190 31.6
Hma1.2p1_0090F.1_g045750 Hydrangea macrophylla HOM05D008031 ORTHO05D010063 2.8e-07 59.7 188 30.9
Hma1.2p1_2628F.1_g325675 Hydrangea macrophylla HOM05D008031 ORTHO05D010063 2.8e-07 59.7 188 30.9
Peaxi162Scf00038g02327 Petunia axillaris HOM05D008031 ORTHO05D010063 2.8e-07 59.7 190 27.9
Eucgr.I02164 Eucalyptus grandis HOM05D008031 ORTHO05D010063 4.8e-07 58.9 184 31.0
Prupe.3G030600 Prunus persica HOM05D008031 ORTHO05D010063 4.8e-07 58.9 188 28.7
TWI14G1127 Tripterygium wilfordii HOM05D008031 ORTHO05D010063 8.2e-07 58.2 188 27.1
CiPaw.01G211000 Carya illinoinensis HOM05D008031 ORTHO05D010063 1.1e-06 57.8 192 28.6
arahy.Tifrunner.gnm1.ann1.8JA41T Arachis hypogaea HOM05D008031 ORTHO05D010063 6.9e-06 55.1 186 28.5
Potri.001G162100 Populus trichocarpa HOM05D008031 ORTHO05D010063 9.0e-06 54.7 189 26.5
Solyc03g123670.3 Solanum lycopersicum HOM05D008031 ORTHO05D010063 9.0e-06 54.7 190 27.4


User provided reference genes

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