Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g01400 Coffea canephora HOM05D005296 ORTHO05D006452 3.5e-143 511.5 245 100.0
Solyc12g099400.2 Solanum lycopersicum HOM05D005296 ORTHO05D006452 4.0e-115 418.3 236 82.2
Sopen12g034070 Solanum pennellii HOM05D005296 ORTHO05D006452 6.9e-115 417.5 236 81.8
CAN.G484.51 Capsicum annuum HOM05D005296 ORTHO05D006452 9.0e-115 417.2 236 80.9
Oeu028323.1 Olea europaea HOM05D005296 ORTHO05D006452 3.4e-114 415.2 254 78.0
Oeu033815.1 Olea europaea HOM05D005296 ORTHO05D006452 7.6e-114 414.1 236 82.2
PGSC0003DMG400004702 Solanum tuberosum HOM05D005296 ORTHO05D006452 1.7e-113 412.9 236 80.5
SGA_v2.0_scaffold119G32698 Striga asiatica HOM05D005296 ORTHO05D006452 8.4e-113 410.6 248 77.8
SGA_v2.0_scaffold91G28037 Striga asiatica HOM05D005296 ORTHO05D006452 1.6e-111 406.4 235 81.3
HanXRQChr03g0083871 Helianthus annuus HOM05D005296 ORTHO05D006452 1.3e-110 403.3 245 76.7
MSTRG.24808 Avicennia marina HOM05D005296 ORTHO05D006452 8.7e-110 400.6 235 79.1
Hma1.2p1_1352F.1_g277550 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 9.6e-109 397.1 251 75.3
GSVIVG01035092001 Vitis vinifera HOM05D005296 ORTHO05D006452 8.1e-108 394.0 249 75.5
vmacro08101 Vaccinium macrocarpon HOM05D005296 ORTHO05D006452 2.4e-107 392.5 245 75.5
Migut.N00068 Erythranthe guttata HOM05D005296 ORTHO05D006452 4.0e-107 391.7 235 79.1
Nitab4.5_0003484g0020 Nicotiana tabacum HOM05D005296 ORTHO05D006452 4.0e-107 391.7 254 74.0
unitig_22.g6340 Utricularia gibba HOM05D005296 ORTHO05D006452 9.0e-107 390.6 233 77.3
ECA240G3796 Erigeron canadensis HOM05D002249 ORTHO05D000452 1.5e-106 389.8 242 76.4
Lj3A826T78 Lonicera japonica HOM05D005296 ORTHO05D006452 1.5e-106 389.8 250 75.6
Cpa.g.sc9.118 Carica papaya HOM05D005296 ORTHO05D006452 1.3e-105 386.7 234 77.4
QL06p010871 Quercus lobata HOM05D005296 ORTHO05D006452 3.8e-105 385.2 232 78.4
Gohir.D01G023502 Gossypium hirsutum HOM05D005296 ORTHO05D006452 4.9e-105 384.8 237 75.5
Gorai.002G028900 Gossypium raimondii HOM05D005296 ORTHO05D006452 4.9e-105 384.8 237 75.5
Haze_01146 Corylus avellana HOM05D005296 ORTHO05D006452 6.5e-105 384.4 235 77.4
Peaxi162Scf03294g00016 Petunia axillaris HOM05D005296 ORTHO05D006452 1.1e-104 383.6 236 77.5
Prupe.1G129900 Prunus persica HOM05D005296 ORTHO05D006452 1.1e-104 383.6 244 73.8
Atru.chr4.2920 Acer truncatum HOM05D005296 ORTHO05D006452 1.9e-104 382.9 235 76.2
Sc13g0006220 Simmondsia chinensis HOM05D005296 ORTHO05D006452 1.9e-104 382.9 239 74.9
Glyma.15G152600 Glycine max HOM05D005296 ORTHO05D006452 3.2e-104 382.1 233 76.0
Ca_01907_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 4.2e-104 381.7 233 76.4
Cfa015446 Carpinus fangiana HOM05D005296 ORTHO05D006452 5.5e-104 381.3 245 74.7
Gohir.A01G033200 Gossypium hirsutum HOM05D005296 ORTHO05D006452 5.5e-104 381.3 233 76.0
MBI19_g08248_MAGBIO Magnolia biondii HOM05D005296 ORTHO05D006452 5.5e-104 381.3 234 77.4
AL7G39130 Arabidopsis lyrata HOM05D005296 ORTHO05D006452 9.3e-104 380.6 243 75.3
RcHm_v2.0_Chr4g0423631 Rosa chinensis HOM05D005296 ORTHO05D006452 9.3e-104 380.6 237 75.1
THA.LOC104821787 Tarenaya hassleriana HOM05D005296 ORTHO05D006452 1.2e-103 380.2 237 74.7
TAR633G2374 Trochodendron aralioides HOM05D005296 ORTHO05D006452 1.2e-103 380.2 233 76.8
Aa31LG10G6140 Aethionema arabicum HOM05D005296 ORTHO05D006452 1.6e-103 379.8 234 74.4
FAN07G1138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 1.6e-103 379.8 235 75.3
arahy.Tifrunner.gnm1.ann1.GJ345V Arachis hypogaea HOM05D005296 ORTHO05D006452 2.7e-103 379.0 237 73.8
Nitab4.5_0000570g0290 Nicotiana tabacum HOM05D005296 ORTHO05D006452 2.7e-103 379.0 236 75.0
Phvul.009G251800 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 2.7e-103 379.0 237 73.4
TPR.G24643 Trifolium pratense HOM05D005296 ORTHO05D006452 4.6e-103 378.3 233 76.0
FAN17G2193 Fragaria x ananassa HOM05D005296 ORTHO05D006452 7.9e-103 377.5 235 74.9
Lj6g0024924 Lotus japonicus HOM05D005296 ORTHO05D006452 7.9e-103 377.5 237 73.8
TWI09G1158 Tripterygium wilfordii HOM05D005296 ORTHO05D006452 7.9e-103 377.5 235 76.2
Aqoxy5G00802 Aquilegia oxysepala HOM05D005296 ORTHO05D006452 1.0e-102 377.1 233 75.5
Carub.0007s2556 Capsella rubella HOM05D005296 ORTHO05D006452 1.3e-102 376.7 234 76.1
FvH4_4g18820 Fragaria vesca HOM05D005296 ORTHO05D006452 1.3e-102 376.7 235 74.5
Potri.010G006000 Populus trichocarpa HOM05D005296 ORTHO05D006452 1.3e-102 376.7 245 73.5
AT4G16060 Arabidopsis thaliana HOM05D005296 ORTHO05D006452 3.0e-102 375.6 234 76.5
Manes.15G009300 Manihot esculenta HOM05D005296 ORTHO05D006452 5.1e-102 374.8 233 75.5
MD16G1162300 Malus domestica HOM05D005296 ORTHO05D006452 6.7e-102 374.4 244 73.0
Sp7g14530 Schrenkiella parvula HOM05D005296 ORTHO05D006452 8.7e-102 374.0 237 73.0
PGR031G1375 Punica granatum HOM05D005296 ORTHO05D006452 1.1e-101 373.6 233 75.1
A03p49510 Brassica napus HOM05D005296 ORTHO05D006452 2.5e-101 372.5 247 70.9
GSVIVG01035093001 Vitis vinifera HOM05D005296 ORTHO05D006452 3.3e-101 372.1 245 71.4
PSO832G0676 Papaver somniferum HOM05D005296 ORTHO05D006452 4.3e-101 371.7 237 74.3
BcaC06g32977 Brassica carinata HOM05D005296 ORTHO05D006452 5.7e-101 371.3 246 72.0
Psat1g156080 Pisum sativum HOM05D005296 ORTHO05D006452 5.7e-101 371.3 233 74.2
BolC7t45282H Brassica oleracea HOM05D005296 ORTHO05D006452 1.3e-100 370.2 247 70.4
Thecc.04G290700 Theobroma cacao HOM05D005296 ORTHO05D006452 1.3e-100 370.2 228 76.3
CARHR290680 Cardamine hirsuta HOM05D005296 ORTHO05D006452 1.6e-100 369.8 237 73.4
Medtr2g435540 Medicago truncatula HOM05D005296 ORTHO05D006452 2.8e-100 369.0 233 74.2
AUR62035079 Chenopodium quinoa HOM05D005296 ORTHO05D006452 3.7e-100 368.6 243 72.0
Thhalv10025823m.g Eutrema salsugineum HOM05D005296 ORTHO05D006452 3.7e-100 368.6 237 72.2
C07p47580 Brassica napus HOM05D005296 ORTHO05D006452 4.8e-100 368.2 245 70.2
Ciclev10005508m.g Citrus clementina HOM05D005296 ORTHO05D006452 4.8e-100 368.2 232 75.9
VMungo1309G1137 Vigna mungo HOM05D005296 ORTHO05D006452 1.8e-99 366.3 264 66.7
BcaC06g33433 Brassica carinata HOM05D005296 ORTHO05D006452 2.4e-99 365.9 244 70.1
CiPaw.01G144600 Carya illinoinensis HOM05D005296 ORTHO05D006452 2.4e-99 365.9 233 75.1
AUR62016165 Chenopodium quinoa HOM05D005296 ORTHO05D006452 3.1e-99 365.5 243 72.0
Lalb_Chr15g0089391 Lupinus albus HOM05D005296 ORTHO05D006452 3.1e-99 365.5 233 73.0
Sabra10G0005100 Salix brachista HOM05D005296 ORTHO05D006452 3.1e-99 365.5 242 71.1
BcaC06g33432 Brassica carinata HOM05D005296 ORTHO05D006452 1.5e-98 363.2 234 71.4
CsaV3_6G022690 Cucumis sativus L. HOM05D005296 ORTHO05D006452 2.6e-98 362.5 235 71.1
MELO3C021302.2 Cucumis melo HOM05D005296 ORTHO05D006452 3.4e-98 362.1 235 71.5
SalBow5G1780 Salvia bowleyana HOM05D005296 ORTHO05D006452 5.9e-98 361.3 251 71.3
Eucgr.A01317 Eucalyptus grandis HOM05D005296 ORTHO05D006452 1.3e-97 360.1 234 71.8
Nn3g21572 Nelumbo nucifera HOM05D005296 ORTHO05D006452 6.5e-97 357.8 233 75.1
Rhsim04G0228000 Rhododendron simsii HOM05D005296 ORTHO05D006452 1.4e-96 356.7 267 67.4
Dinv29712 Davidia involucrata HOM05D005296 ORTHO05D000287 1.9e-96 356.3 249 70.3
C07p47550 Brassica napus HOM05D005296 ORTHO05D006452 3.2e-96 355.5 265 64.9
BraA03t14050Z Brassica rapa HOM05D005296 ORTHO05D006452 3.2e-96 355.5 253 68.4
Actinidia40306 Actinidia chinensis HOM05D005296 ORTHO05D006452 3.6e-95 352.1 258 67.1
CsaV3_6G022680 Cucumis sativus L. HOM05D005296 ORTHO05D006452 3.6e-95 352.1 235 70.2
Sed0027436 Sechium edule HOM05D005296 ORTHO05D006452 1.0e-94 350.5 235 69.8
SEGI_03423 Sequoiadendron giganteum HOM05D005296 ORTHO05D006452 3.9e-94 348.6 235 70.2
Os05g0358400 Oryza sativa ssp. japonica HOM05D005296 ORTHO05D006452 1.5e-93 346.7 218 74.3
CsaV3_6G022700 Cucumis sativus L. HOM05D005296 ORTHO05D006452 2.5e-93 345.9 235 68.9
Zm00001eb346400 Zea mays HOM05D005296 ORTHO05D006452 1.1e-91 340.5 233 68.7
arahy.Tifrunner.gnm1.ann1.28UQCP Arachis hypogaea HOM05D005296 ORTHO05D006452 1.1e-88 330.5 233 63.9
arahy.Tifrunner.gnm1.ann1.5R3I64 Arachis hypogaea HOM05D005296 ORTHO05D006452 1.9e-88 329.7 238 62.6
VMungo1215G1937 Vigna mungo HOM05D005296 ORTHO05D006452 4.2e-88 328.6 233 63.9
ATR0730G096 Amborella trichopoda HOM05D005296 ORTHO05D006452 2.1e-87 326.2 233 64.8
Glyma.07G244600 Glycine max HOM05D005296 ORTHO05D006452 3.6e-87 325.5 238 62.6
Lalb_Chr07g0182261 Lupinus albus HOM05D005296 ORTHO05D006452 2.0e-85 319.7 232 63.4
ATR1131G025 Amborella trichopoda HOM05D005296 ORTHO05D006452 4.8e-84 315.1 234 63.2
Phvul.003G108300 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 1.1e-83 313.9 233 61.8
Pp3c24_6150 Physcomitrium patens HOM05D005296 ORTHO05D006452 1.4e-83 313.5 234 63.2
Psat4g024760 Pisum sativum HOM05D005296 ORTHO05D006452 1.4e-83 313.5 219 65.3
AagrBONN_evm.TU.Sc2ySwM_228.710 Anthoceros agrestis HOM05D005296 ORTHO05D006452 1.8e-83 313.2 242 62.8
Ca_21474_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 1.5e-82 310.1 219 64.4
ATR0916G003 Amborella trichopoda HOM05D005296 ORTHO05D006452 5.9e-82 308.1 233 62.2
SMO367G1004 Selaginella moellendorffii HOM05D005296 ORTHO05D006452 7.7e-82 307.8 239 61.1
Medtr4g120420 Medicago truncatula HOM05D005296 ORTHO05D006452 2.9e-81 305.8 219 63.0
Lj4g0000030 Lotus japonicus HOM05D005296 ORTHO05D006452 1.4e-80 303.5 230 59.1
FAN12G2682 Fragaria x ananassa HOM05D005296 ORTHO05D006452 5.5e-80 301.6 240 65.0
ATR1127G052 Amborella trichopoda HOM05D005296 ORTHO05D006452 4.7e-79 298.5 235 58.7
Ciclev10024287m.g Citrus clementina HOM05D005296 ORTHO05D006452 3.9e-78 295.4 236 64.4
Mapoly0019s0068 Marchantia polymorpha HOM05D005296 ORTHO05D006452 6.7e-78 294.7 237 60.8
Duzib151G0219 Durio zibethinus HOM05D005296 ORTHO05D006452 4.4e-77 292.0 228 62.3
SGA_v2.0_scaffold146G36237 Striga asiatica HOM05D005296 ORTHO05D006452 8.5e-73 277.7 243 56.8
DCAR_002489 Daucus carota HOM05D005296 ORTHO05D006452 1.5e-72 276.9 233 60.5
MELO3C021303.2 Cucumis melo HOM05D005296 ORTHO05D006452 2.5e-72 276.2 235 59.1
SHI00197 Sapria himalayana HOM05D005296 ORTHO05D006452 2.7e-71 272.7 172 73.3
COL.COLO4_03630 Corchorus olitorius HOM05D005296 ORTHO05D006452 3.7e-68 262.3 231 59.3
TPR.G22773 Trifolium pratense HOM05D005296 ORTHO05D006452 5.9e-66 255.0 184 63.6
ClCG06G004890 Citrullus lanatus HOM05D005296 ORTHO05D006452 1.0e-65 254.2 244 57.0
EL10Ac3g04942 Beta vulgaris HOM05D005296 ORTHO05D006452 5.0e-65 251.9 162 71.0
CBR_g37153 Chara braunii HOM05D005296 ORTHO05D006452 1.5e-64 250.4 289 46.4
Hund03087 Selenicereus undatus HOM05D005296 ORTHO05D006452 3.4e-61 239.2 173 68.8
CSS0013365 Camellia sinensis var. sinensis HOM05D005296 ORTHO05D006452 1.3e-60 237.3 259 52.1
Lsat_1_v5_gn_6_76180 Lactuca sativa HOM05D002249 ORTHO05D002443 1.7e-60 236.9 239 55.6
FAN12G3138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 9.5e-56 221.1 173 62.4
HPP92_006907 Vanilla planifolia HOM05D005296 ORTHO05D006452 2.8e-55 219.5 145 71.0
Duzib212G0376 Durio zibethinus HOM05D005296 ORTHO05D006452 3.6e-55 219.2 196 57.1
CDE08G0885 Ceratophyllum demersum HOM05D005296 ORTHO05D006452 1.4e-54 217.2 144 72.9
Cre12.g494250 Chlamydomonas reinhardtii HOM05D005296 ORTHO05D006452 2.7e-50 203.0 299 40.1
Psat4g063800 Pisum sativum HOM05D005296 ORTHO05D006452 2.9e-44 183.0 120 66.7
MCO07G237 Micromonas commoda HOM05D005296 ORTHO05D006452 9.2e-43 177.9 246 44.3
SGA_v2.0_scaffold227G43235 Striga asiatica HOM05D005296 ORTHO05D006452 2.6e-37 159.8 135 60.0
TPR.G17880 Trifolium pratense HOM05D005296 ORTHO05D006452 3.7e-36 156.0 115 63.5
MELO3C034931.2 Cucumis melo HOM05D005296 ORTHO05D006452 4.6e-34 149.1 101 71.3
PGR031G0664 Punica granatum HOM05D005296 ORTHO05D006452 1.7e-33 147.1 267 39.0
CBR_g19333 Chara braunii HOM05D005296 ORTHO05D006452 2.3e-30 136.7 121 57.0
Psat4g063760 Pisum sativum HOM05D005296 ORTHO05D006452 1.5e-29 134.0 101 61.4
Ah.04g155180 Amaranthus hybridus HOM05D005296 ORTHO05D006452 7.5e-29 131.7 145 51.7
MD02G1019800 Malus domestica HOM05D005296 ORTHO05D006452 3.9e-25 119.4 73 75.3
arahy.Tifrunner.gnm1.ann1.GS2NMQ Arachis hypogaea HOM05D005296 ORTHO05D006452 3.8e-20 102.8 58 81.0
Hma1.2p1_0718F.1_g208290 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 2.8e-15 86.7 94 47.9
arahy.Tifrunner.gnm1.ann1.GK6QEP Arachis hypogaea HOM05D005296 ORTHO05D006452 6.9e-14 82.0 74 50.0
Hma1.2p1_0180F.1_g079860 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 1.2e-13 81.3 73 58.9
Hma1.2p1_1570F.1_g291260 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 4.9e-12 75.9 53 67.9
arahy.Tifrunner.gnm1.ann1.3T38WV Arachis hypogaea HOM05D005296 ORTHO05D006452 2.1e-10 70.5 57 52.6


User provided reference genes

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