Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g01170 Coffea canephora HOM05D005143 ORTHO05D006404 4.6e-138 494.6 256 100.0
PGSC0003DMG400014988 Solanum tuberosum HOM05D005143 ORTHO05D006404 4.4e-88 328.6 261 66.3
Dinv02072 Davidia involucrata HOM05D005143 ORTHO05D006404 7.5e-88 327.8 262 68.7
Lj6A685T16 Lonicera japonica HOM05D005143 ORTHO05D006404 7.5e-88 327.8 264 64.8
Sopen01g026590 Solanum pennellii HOM05D005143 ORTHO05D006404 1.7e-87 326.6 261 65.9
Solyc01g060450.3 Solanum lycopersicum HOM05D005143 ORTHO05D006404 1.4e-86 323.6 261 65.1
Hma1.2p1_0013F.1_g008930 Hydrangea macrophylla HOM05D005143 ORTHO05D006404 9.2e-86 320.9 260 63.8
Nitab4.5_0000169g0050 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.7e-85 319.3 262 64.5
Nitab4.5_0001695g0020 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.0e-84 317.4 262 64.1
vmacro08077 Vaccinium macrocarpon HOM05D005143 ORTHO05D006404 3.3e-83 312.4 265 62.6
CAN.G1016.6 Capsicum annuum HOM05D005143 ORTHO05D006404 4.3e-83 312.0 263 64.3
CSS0004405 Camellia sinensis var. sinensis HOM05D005143 ORTHO05D006404 9.5e-83 310.8 259 63.3
Actinidia15583 Actinidia chinensis HOM05D005143 ORTHO05D006404 1.2e-82 310.5 264 61.0
Actinidia40351 Actinidia chinensis HOM05D005143 ORTHO05D006404 2.8e-82 309.3 264 61.0
GSVIVG01035046001 Vitis vinifera HOM05D005143 ORTHO05D006404 2.6e-80 302.8 259 60.6
Lalb_Chr20g0121021 Lupinus albus HOM05D005143 ORTHO05D006404 9.8e-80 300.8 263 60.8
MSTRG.21781 Avicennia marina HOM05D005143 ORTHO05D006404 1.3e-79 300.4 265 62.6
Ciclev10007083m.g Citrus clementina HOM05D005143 ORTHO05D006404 1.7e-79 300.1 265 60.4
QL06p011304 Quercus lobata HOM05D005143 ORTHO05D006404 2.2e-79 299.7 262 61.1
Dinv44320 Davidia involucrata HOM05D005143 ORTHO05D006404 2.9e-79 299.3 262 60.7
Oeu016479.2 Olea europaea HOM05D005143 ORTHO05D006404 2.4e-78 296.2 235 68.5
Lj6g0005650 Lotus japonicus HOM05D005143 ORTHO05D006404 4.1e-78 295.4 265 61.1
Medtr2g034880 Medicago truncatula HOM05D005143 ORTHO05D006404 4.1e-78 295.4 260 63.1
Glyma.09G039500 Glycine max HOM05D005143 ORTHO05D006404 5.4e-78 295.0 258 61.6
Cfa015478 Carpinus fangiana HOM05D005143 ORTHO05D006404 9.2e-78 294.3 264 61.0
TWI09G1317 Tripterygium wilfordii HOM05D005143 ORTHO05D006404 9.2e-78 294.3 260 61.2
Haze_01089 Corylus avellana HOM05D005143 ORTHO05D006404 1.2e-77 293.9 266 59.8
Sabra10G0108500 Salix brachista HOM05D005143 ORTHO05D006404 1.2e-77 293.9 263 59.7
Atru.chr4.2951 Acer truncatum HOM05D005143 ORTHO05D006404 1.6e-77 293.5 264 61.7
TPR.G27704 Trifolium pratense HOM05D005143 ORTHO05D006404 1.6e-77 293.5 258 60.9
Manes.15G007000 Manihot esculenta HOM05D005143 ORTHO05D006404 3.5e-77 292.4 251 62.2
VMungo1309G2864 Vigna mungo HOM05D005143 ORTHO05D006404 3.5e-77 292.4 258 61.6
Potri.010G140400 Populus trichocarpa HOM05D005143 ORTHO05D006404 4.6e-77 292.0 262 58.8
Psat1g158200 Pisum sativum HOM05D005143 ORTHO05D006404 6.0e-77 291.6 266 60.5
Migut.N00060 Erythranthe guttata HOM05D005143 ORTHO05D006404 1.0e-76 290.8 267 61.0
Peaxi162Scf00065g00033 Petunia axillaris HOM05D005143 ORTHO05D006404 2.3e-76 289.7 262 61.5
SalBow5G4838 Salvia bowleyana HOM05D005143 ORTHO05D006404 3.9e-76 288.9 258 61.2
Phvul.009G253600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 8.6e-76 287.7 258 60.9
Duzib151G0017 Durio zibethinus HOM05D005143 ORTHO05D006404 1.9e-75 286.6 260 59.2
Glyma.15G144700 Glycine max HOM05D005143 ORTHO05D006404 3.3e-75 285.8 258 60.5
Lsat_1_v5_gn_6_115260 Lactuca sativa HOM05D005143 ORTHO05D006404 4.3e-75 285.4 262 60.7
TAR362G0369 Trochodendron aralioides HOM05D005143 ORTHO05D006404 4.3e-75 285.4 246 61.8
Ca_01881_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 5.6e-75 285.0 242 62.0
Ca_01895_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 5.6e-75 285.0 242 62.0
Lalb_Chr18g0058921 Lupinus albus HOM05D005143 ORTHO05D006404 1.4e-73 280.4 265 58.1
arahy.Tifrunner.gnm1.ann1.UTG064 Arachis hypogaea HOM05D005143 ORTHO05D006404 2.3e-73 279.6 269 58.4
CsaV3_3G015020 Cucumis sativus L. HOM05D005143 ORTHO05D006404 4.0e-73 278.9 254 59.4
CiPaw.01G142400 Carya illinoinensis HOM05D005143 ORTHO05D006404 1.5e-72 276.9 263 56.3
PSO210G3751 Papaver somniferum HOM05D005143 ORTHO05D006404 2.0e-72 276.6 226 64.2
Prupe.1G125800 Prunus persica HOM05D005143 ORTHO05D006404 2.0e-72 276.6 246 61.0
ClCG05G006400 Citrullus lanatus HOM05D005143 ORTHO05D006404 2.6e-72 276.2 246 60.6
SGA_v2.0_scaffold119G32680 Striga asiatica HOM05D005143 ORTHO05D006404 2.6e-72 276.2 225 64.9
Potri.008G108900 Populus trichocarpa HOM05D005143 ORTHO05D006404 3.4e-72 275.8 238 60.5
Potri.T170901 Populus trichocarpa HOM05D005143 ORTHO05D006404 3.4e-72 275.8 238 60.5
PSO761G0512 Papaver somniferum HOM05D005143 ORTHO05D006404 4.4e-72 275.4 248 60.5
MELO3C006698.2 Cucumis melo HOM05D005143 ORTHO05D006404 7.5e-72 274.6 255 58.4
Sabra08G0082500 Salix brachista HOM05D005143 ORTHO05D006404 7.5e-72 274.6 245 60.4
Sed0010751 Sechium edule HOM05D005143 ORTHO05D006404 7.5e-72 274.6 248 60.1
Glyma.17G031200 Glycine max HOM05D005143 ORTHO05D006404 1.3e-71 273.9 230 63.5
DCAR_030483 Daucus carota HOM05D005143 ORTHO05D006404 1.7e-71 273.5 235 62.1
FvH4_4g19280 Fragaria vesca HOM05D005143 ORTHO05D006404 1.7e-71 273.5 247 59.5
Thecc.04G294800 Theobroma cacao HOM05D005143 ORTHO05D006404 2.9e-71 272.7 261 58.2
RcHm_v2.0_Chr4g0424271 Rosa chinensis HOM05D005143 ORTHO05D006404 3.7e-71 272.3 247 59.1
COL.COLO4_34676 Corchorus olitorius HOM05D005143 ORTHO05D006404 6.4e-71 271.6 238 61.3
FAN12G3988 Fragaria x ananassa HOM05D005143 ORTHO05D006404 6.4e-71 271.6 247 59.1
Gorai.011G195900 Gossypium raimondii HOM05D005143 ORTHO05D006404 8.3e-71 271.2 257 56.8
DCAR_002501 Daucus carota HOM05D005143 ORTHO05D006404 2.4e-70 269.6 254 57.5
Gohir.A10G168900 Gossypium hirsutum HOM05D005143 ORTHO05D006404 3.2e-70 269.2 257 56.0
AT5G49320 Arabidopsis thaliana HOM05D005143 ORTHO05D006404 4.1e-70 268.9 255 54.9
BraA02t08785Z Brassica rapa HOM05D005143 ORTHO05D006404 4.1e-70 268.9 255 56.1
Gohir.D10G175100 Gossypium hirsutum HOM05D005143 ORTHO05D006404 5.4e-70 268.5 257 56.0
Sp2g19670 Schrenkiella parvula HOM05D005143 ORTHO05D006404 7.0e-70 268.1 255 55.3
BcaB07g34148 Brassica carinata HOM05D005143 ORTHO05D006404 1.2e-69 267.3 236 59.3
Thhalv10005363m.g Eutrema salsugineum HOM05D005143 ORTHO05D006404 1.2e-69 267.3 255 55.7
ECA246G2788 Erigeron canadensis HOM05D005143 ORTHO05D006404 2.1e-69 266.5 267 58.1
PGR031G1222 Punica granatum HOM05D005143 ORTHO05D006404 2.1e-69 266.5 247 59.1
AL8G22960 Arabidopsis lyrata HOM05D005143 ORTHO05D006404 2.7e-69 266.2 255 54.5
A02p38010 Brassica napus HOM05D005143 ORTHO05D006404 3.5e-69 265.8 236 58.9
CARHR182240 Cardamine hirsuta HOM05D005143 ORTHO05D006404 3.5e-69 265.8 254 55.9
BcaC03g17714 Brassica carinata HOM05D005143 ORTHO05D006404 1.3e-68 263.8 236 58.5
BolC2t11792H Brassica oleracea HOM05D005143 ORTHO05D006404 1.3e-68 263.8 236 58.5
Carub.0008s0919 Capsella rubella HOM05D005143 ORTHO05D006404 1.3e-68 263.8 236 58.5
Phvul.003G110600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 1.3e-68 263.8 240 59.2
EL10Ac3g04926 Beta vulgaris HOM05D005143 ORTHO05D006404 2.3e-68 263.1 247 58.3
C02p57210 Brassica napus HOM05D005143 ORTHO05D006404 2.3e-68 263.1 236 58.5
MD16G1159000 Malus domestica HOM05D005143 ORTHO05D006404 2.3e-68 263.1 239 58.6
Aqoxy2G02819 Aquilegia oxysepala HOM05D005143 ORTHO05D006404 3.0e-68 262.7 251 59.0
CiPaw.02G077100 Carya illinoinensis HOM05D005143 ORTHO05D006404 6.6e-68 261.5 265 55.1
Eucgr.A00195 Eucalyptus grandis HOM05D005143 ORTHO05D006404 6.6e-68 261.5 269 59.1
BcaNung02596 Brassica carinata HOM05D005143 ORTHO05D006404 2.5e-67 259.6 227 59.9
Ah.04g154920 Amaranthus hybridus HOM05D005143 ORTHO05D006404 4.3e-67 258.8 247 57.9
THA.LOC104818896 Tarenaya hassleriana HOM05D005143 ORTHO05D006404 4.3e-67 258.8 234 57.7
VMungo1215G3234 Vigna mungo HOM05D005143 ORTHO05D006404 5.6e-67 258.5 240 58.3
MD13G1158800 Malus domestica HOM05D005143 ORTHO05D006404 7.3e-67 258.1 226 59.3
Aa31LG11G7840 Aethionema arabicum HOM05D005143 ORTHO05D006404 2.1e-66 256.5 237 56.5
C07p39840 Brassica napus HOM05D005143 ORTHO05D006404 2.1e-66 256.5 227 59.5
BolC7t44512H Brassica oleracea HOM05D005143 ORTHO05D006404 8.1e-66 254.6 227 59.0
AUR62035066 Chenopodium quinoa HOM05D005143 ORTHO05D006404 1.1e-65 254.2 244 57.0
Cpa.g.sc9.99 Carica papaya HOM05D005143 ORTHO05D006404 1.8e-65 253.4 240 57.9
Sc25g0003440 Simmondsia chinensis HOM05D005143 ORTHO05D006404 2.3e-65 253.1 229 58.5
Duzib052G1152 Durio zibethinus HOM05D005143 ORTHO05D006404 2.0e-64 250.0 243 56.8
Hund02954 Selenicereus undatus HOM05D005143 ORTHO05D006404 2.4e-62 243.0 250 54.8
HanXRQChr03g0093441 Helianthus annuus HOM05D005143 ORTHO05D006404 1.6e-61 240.4 259 54.4
FAN07G0192 Fragaria x ananassa HOM05D005143 ORTHO05D006404 4.6e-61 238.8 205 62.4
Nn3g21616 Nelumbo nucifera HOM05D005143 ORTHO05D006404 7.8e-61 238.0 250 56.0
Medtr2g034890 Medicago truncatula HOM05D005143 ORTHO05D006404 1.0e-60 237.7 237 58.6
CANSAT78G1129 Cannabis sativa HOM05D005143 ORTHO05D006404 5.1e-60 235.3 241 56.4
TPR.G27702 Trifolium pratense HOM05D005143 ORTHO05D006404 7.3e-59 231.5 256 55.1
Rhsim04G0232200 Rhododendron simsii HOM05D005143 ORTHO05D006404 2.1e-58 229.9 264 53.0
Sabra08G0082600 Salix brachista HOM05D005143 ORTHO05D006404 2.1e-58 229.9 238 53.8
MBI19_g29991_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D006404 6.8e-57 224.9 253 52.6
arahy.Tifrunner.gnm1.ann1.PXPP98 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.4e-54 217.2 204 58.3
SGA_v2.0_scaffold91G28048 Striga asiatica HOM05D005143 ORTHO05D006404 3.5e-53 212.6 252 53.2
Lalb_Chr12g0200981 Lupinus albus HOM05D005143 ORTHO05D006404 6.0e-53 211.8 211 56.9
arahy.Tifrunner.gnm1.ann1.RF9CFS Arachis hypogaea HOM05D005143 ORTHO05D006404 2.5e-51 206.5 212 56.6
arahy.Tifrunner.gnm1.ann1.W9GTE1 Arachis hypogaea HOM05D005143 ORTHO05D006404 7.3e-51 204.9 212 55.7
FAN12G2949 Fragaria x ananassa HOM05D005143 ORTHO05D006404 4.4e-48 195.7 181 58.6
CDE11G0634 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 1.7e-47 193.7 238 47.1
TAR633G2465 Trochodendron aralioides HOM05D005143 ORTHO05D006404 2.2e-47 193.4 169 58.0
Carub.0008s0727 Capsella rubella HOM05D005143 ORTHO05D006404 1.0e-44 184.5 227 47.6
Oeu006437.1 Olea europaea HOM05D005143 ORTHO05D006404 1.9e-38 163.7 134 64.2
Nitab4.5_0000531g0070 Nicotiana tabacum HOM05D005143 ORTHO05D006404 3.2e-38 162.9 179 53.1
Nitab4.5_0008735g0010 Nicotiana tabacum HOM05D005143 ORTHO05D006404 7.1e-38 161.8 252 44.4
HPP92_001064 Vanilla planifolia HOM05D005143 ORTHO05D006404 1.6e-37 160.6 217 45.2
CDE05G0725 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 2.5e-35 153.3 166 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1032 Anthoceros agrestis HOM05D005143 ORTHO05D006404 1.1e-33 147.9 268 39.2
AUR62043573 Chenopodium quinoa HOM05D005143 ORTHO05D006404 3.1e-33 146.4 106 65.1
SEGI_36016 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 5.3e-33 145.6 228 36.0
Zm00001eb127640 Zea mays HOM05D005143 ORTHO05D006404 1.2e-32 144.4 209 41.6
SEGI_27691 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 1.7e-31 140.6 226 36.7
AUR62016151 Chenopodium quinoa HOM05D005143 ORTHO05D006404 3.2e-30 136.3 165 49.1
SEGI_03781 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 1.2e-29 134.4 226 34.5
Nitab4.5_0005463g0090 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.0e-28 131.3 154 53.2
Os01g0253400 Oryza sativa ssp. japonica HOM05D005143 ORTHO05D006404 1.9e-27 127.1 216 37.5
ATR0706G251 Amborella trichopoda HOM05D005143 ORTHO05D006404 2.5e-27 126.7 245 35.5
Hund11951 Selenicereus undatus HOM05D005143 ORTHO05D006404 1.3e-26 124.4 140 47.1
Lj3C827T17 Lonicera japonica HOM05D005143 ORTHO05D006404 6.1e-13 79.0 69 59.4
CDE05G1990 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 8.8e-12 75.1 161 34.2
A06p38430 Brassica napus HOM05D005143 ORTHO05D006404 2.8e-10 70.1 78 50.0
BraA06t26757Z Brassica rapa HOM05D005143 ORTHO05D006404 2.8e-10 70.1 78 50.0
arahy.Tifrunner.gnm1.ann1.T63ME6 Arachis hypogaea HOM05D005143 ORTHO05D006404 9.1e-09 65.1 71 54.9
MBI09_g03808_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D000022 7.2e-06 55.5 74 41.9


User provided reference genes

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