Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g00990 Coffea canephora HOM05D002174 ORTHO05D005447 1.5e-19 98.6 53 100.0
Cc03_g01000 Coffea canephora HOM05D002174 ORTHO05D005447 4.2e-17 90.5 48 100.0
Oeu016484.2 Olea europaea HOM05D002174 ORTHO05D005447 1.3e-15 85.5 48 91.7
MSTRG.3864 Avicennia marina HOM05D002174 ORTHO05D005447 3.0e-15 84.3 48 89.6
Migut.N00049 Erythranthe guttata HOM05D002174 ORTHO05D005447 3.0e-15 84.3 48 89.6
Oeu033900.1 Olea europaea HOM05D002174 ORTHO05D005447 3.9e-15 84.0 48 89.6
DCAR_027009 Daucus carota HOM05D002174 ORTHO05D005447 8.7e-15 82.8 48 91.7
Migut.G00088 Erythranthe guttata HOM05D002174 ORTHO05D005447 1.1e-14 82.4 48 87.5
Lalb_Chr13g0298411 Lupinus albus HOM05D002174 ORTHO05D005447 1.1e-14 82.4 48 91.7
QL06p011615 Quercus lobata HOM05D002174 ORTHO05D005447 1.9e-14 81.6 47 89.4
Lj4g0009380 Lotus japonicus HOM05D002174 ORTHO05D005447 2.5e-14 81.3 48 89.6
PGR031G3841 Punica granatum HOM05D002174 ORTHO05D005447 2.5e-14 81.3 48 87.5
TAR636G3310 Trochodendron aralioides HOM05D002174 ORTHO05D005447 3.3e-14 80.9 48 89.6
Potri.010G142300 Populus trichocarpa HOM05D002174 ORTHO05D005447 5.6e-14 80.1 48 87.5
RcHm_v2.0_Chr4g0424511 Rosa chinensis HOM05D002174 ORTHO05D005447 5.6e-14 80.1 48 87.5
Ciclev10006030m.g Citrus clementina HOM05D002174 ORTHO05D005447 7.4e-14 79.7 48 85.4
PSO210G4136 Papaver somniferum HOM05D002174 ORTHO05D005447 7.4e-14 79.7 48 87.5
PSO761G0631 Papaver somniferum HOM05D002174 ORTHO05D005447 7.4e-14 79.7 48 87.5
Psat0s2066g0040 Pisum sativum HOM05D002174 ORTHO05D005447 7.4e-14 79.7 48 87.5
Solyc01g060070.3 Solanum lycopersicum HOM05D002174 ORTHO05D005447 7.4e-14 79.7 48 87.5
Sopen01g026250 Solanum pennellii HOM05D002174 ORTHO05D005447 7.4e-14 79.7 48 87.5
Haze_01275 Corylus avellana HOM05D002174 ORTHO05D005447 9.6e-14 79.3 48 89.6
Medtr4g121900 Medicago truncatula HOM05D002174 ORTHO05D005447 9.6e-14 79.3 48 87.5
GSVIVG01035019001 Vitis vinifera HOM05D002174 ORTHO05D005447 9.6e-14 79.3 48 89.6
Lj3C829T9 Lonicera japonica HOM05D002174 ORTHO05D005447 1.3e-13 79.0 48 85.4
Lalb_Chr06g0165391 Lupinus albus HOM05D002174 ORTHO05D005447 1.3e-13 79.0 48 87.5
Lalb_Chr07g0182101 Lupinus albus HOM05D002174 ORTHO05D005447 1.3e-13 79.0 48 87.5
Aqoxy2G02777 Aquilegia oxysepala HOM05D002174 ORTHO05D005447 1.6e-13 78.6 48 85.4
arahy.Tifrunner.gnm1.ann1.XZ5MVW Arachis hypogaea HOM05D002174 ORTHO05D005447 1.6e-13 78.6 48 87.5
CAN.G197.4 Capsicum annuum HOM05D002174 ORTHO05D005447 1.6e-13 78.6 48 85.4
Ca_21451_v3 Cicer arietinum L. HOM05D002174 ORTHO05D005447 1.6e-13 78.6 48 85.4
MBI18_g31671_MAGBIO Magnolia biondii HOM05D002174 ORTHO05D005447 1.6e-13 78.6 50 82.0
Nn3g21677 Nelumbo nucifera HOM05D002174 ORTHO05D005447 1.6e-13 78.6 48 85.4
Nitab4.5_0001414g0010 Nicotiana tabacum HOM05D002174 ORTHO05D005447 1.6e-13 78.6 48 85.4
Nitab4.5_0003294g0030 Nicotiana tabacum HOM05D002174 ORTHO05D005447 1.6e-13 78.6 48 85.4
PGSC0003DMG400026692 Solanum tuberosum HOM05D002174 ORTHO05D005447 1.6e-13 78.6 48 85.4
Thecc.04G297400 Theobroma cacao HOM05D002174 ORTHO05D005447 1.6e-13 78.6 48 85.4
ATR0707G001 Amborella trichopoda HOM05D002174 ORTHO05D005447 2.1e-13 78.2 48 85.4
Dinv44304 Davidia involucrata HOM05D002174 ORTHO05D005447 2.1e-13 78.2 48 85.4
Eucgr.A00350 Eucalyptus grandis HOM05D002174 ORTHO05D005447 2.1e-13 78.2 48 85.4
Cpa.g.sc9.88 Carica papaya HOM05D002174 ORTHO05D005447 2.8e-13 77.8 48 81.2
Phvul.009G255100 Phaseolus vulgaris HOM05D002174 ORTHO05D005447 2.8e-13 77.8 48 85.4
FvH4_4g19460 Fragaria vesca HOM05D002174 ORTHO05D005447 3.7e-13 77.4 48 85.4
FAN07G2201 Fragaria x ananassa HOM05D002174 ORTHO05D005447 3.7e-13 77.4 48 85.4
FAN12G1286 Fragaria x ananassa HOM05D002174 ORTHO05D005447 3.7e-13 77.4 48 85.4
TPR.G16828 Trifolium pratense HOM05D002174 ORTHO05D005447 3.7e-13 77.4 48 85.4
vmacro15190 Vaccinium macrocarpon HOM05D002174 ORTHO05D005447 3.7e-13 77.4 48 87.5
Sabra08G0081100 Salix brachista HOM05D002174 ORTHO05D005447 4.8e-13 77.0 48 83.3
Sabra10G0110000 Salix brachista HOM05D002174 ORTHO05D005447 4.8e-13 77.0 48 83.3
TAR365G0957 Trochodendron aralioides HOM05D002174 ORTHO05D005447 4.8e-13 77.0 48 87.5
CiPaw.01G139900 Carya illinoinensis HOM05D002174 ORTHO05D005447 6.2e-13 76.6 48 83.3
Rhsim02G0005200 Rhododendron simsii HOM05D002174 ORTHO05D005447 6.2e-13 76.6 48 85.4
SalBow5G1439 Salvia bowleyana HOM05D002174 ORTHO05D005447 6.2e-13 76.6 48 83.3
Actinidia14262 Actinidia chinensis HOM05D002174 ORTHO05D005447 8.1e-13 76.3 48 85.4
Glyma.09G037800 Glycine max HOM05D002174 ORTHO05D005447 8.1e-13 76.3 48 83.3
Glyma.15G142900 Glycine max HOM05D002174 ORTHO05D005447 8.1e-13 76.3 48 83.3
MD13G1156400 Malus domestica HOM05D002174 ORTHO05D005447 8.1e-13 76.3 48 85.4
Prupe.1G122200 Prunus persica HOM05D002174 ORTHO05D005447 8.1e-13 76.3 48 85.4
arahy.Tifrunner.gnm1.ann1.UNW18Y Arachis hypogaea HOM05D002174 ORTHO05D005447 1.1e-12 75.9 48 85.4
Cfa015340 Carpinus fangiana HOM05D002174 ORTHO05D005447 1.1e-12 75.9 48 83.3
Lj6g0023775 Lotus japonicus HOM05D002174 ORTHO05D005447 1.1e-12 75.9 48 83.3
Peaxi162Scf00065g00015 Petunia axillaris HOM05D002174 ORTHO05D005447 1.1e-12 75.9 48 81.2
TWI09G1315 Tripterygium wilfordii HOM05D002174 ORTHO05D005447 1.1e-12 75.9 48 81.2
VMungo1309G3089 Vigna mungo HOM05D002174 ORTHO05D005447 1.1e-12 75.9 48 83.3
arahy.Tifrunner.gnm1.ann1.LMI6R7 Arachis hypogaea HOM05D002174 ORTHO05D005447 1.4e-12 75.5 48 83.3
Duzib151G0365 Durio zibethinus HOM05D002174 ORTHO05D005447 1.4e-12 75.5 48 81.2
Atru.chr4.2988 Acer truncatum HOM05D002174 ORTHO05D005447 1.8e-12 75.1 48 81.2
THA.LOC104820299 Tarenaya hassleriana HOM05D002174 ORTHO05D005447 1.8e-12 75.1 48 77.1
Potri.008G107200 Populus trichocarpa HOM05D002174 ORTHO05D005447 2.4e-12 74.7 48 83.3
Lsat_1_v5_gn_6_18361 Lactuca sativa HOM05D002174 ORTHO05D005447 3.1e-12 74.3 48 83.3
MD16G1157300 Malus domestica HOM05D002174 ORTHO05D005447 3.1e-12 74.3 48 83.3
Zm00001eb014550 Zea mays HOM05D002174 ORTHO05D005447 3.1e-12 74.3 48 77.1
HanXRQChr13g0395301 Helianthus annuus HOM05D002174 ORTHO05D005447 4.0e-12 73.9 48 83.3
Manes.15G005500 Manihot esculenta HOM05D002174 ORTHO05D005447 4.0e-12 73.9 49 83.7
Psat3g002000 Pisum sativum HOM05D002174 ORTHO05D005447 4.0e-12 73.9 48 79.2
CSS0048523 Camellia sinensis var. sinensis HOM05D002174 ORTHO05D005447 5.3e-12 73.6 48 83.3
ECA233G3490 Erigeron canadensis HOM05D002174 ORTHO05D005447 6.9e-12 73.2 48 83.3
Actinidia40361 Actinidia chinensis HOM05D002174 ORTHO05D005447 9.0e-12 72.8 48 81.2
ECA246G2588 Erigeron canadensis HOM05D002174 ORTHO05D005447 9.0e-12 72.8 48 81.2
Lj6A689T51 Lonicera japonica HOM05D002174 ORTHO05D005447 9.0e-12 72.8 48 77.1
HPP92_001059 Vanilla planifolia HOM05D002174 ORTHO05D005447 9.0e-12 72.8 48 79.2
HPP92_001148 Vanilla planifolia HOM05D002174 ORTHO05D005447 9.0e-12 72.8 48 79.2
Actinidia15593 Actinidia chinensis HOM05D002174 ORTHO05D005447 1.5e-11 72.0 48 81.2
CDE01G0513 Ceratophyllum demersum HOM05D002174 ORTHO05D005447 1.5e-11 72.0 48 75.0
Ca_01872_v3 Cicer arietinum L. HOM05D002174 ORTHO05D005447 2.0e-11 71.6 48 77.1
SGA_v2.0_scaffold119G32666 Striga asiatica HOM05D002174 ORTHO05D005447 2.0e-11 71.6 40 92.5
unitig_32.g10635 Utricularia gibba HOM05D002174 ORTHO05D005447 3.4e-11 70.9 48 75.0
AUR62016131 Chenopodium quinoa HOM05D002174 ORTHO05D005447 4.5e-11 70.5 48 75.0
AUR62041404 Chenopodium quinoa HOM05D002174 ORTHO05D005447 4.5e-11 70.5 48 75.0
HanXRQChr05g0145771 Helianthus annuus HOM05D002174 ORTHO05D005447 5.8e-11 70.1 48 81.2
Lsat_1_v5_gn_6_114360 Lactuca sativa HOM05D002174 ORTHO05D005447 5.8e-11 70.1 44 84.1
Medtr2g034550 Medicago truncatula HOM05D002174 ORTHO05D005447 5.8e-11 70.1 48 75.0
MBI04_g37587_MAGBIO Magnolia biondii HOM05D002174 ORTHO05D005447 7.6e-11 69.7 50 68.0
Aa31LG10G5960 Aethionema arabicum HOM05D002174 ORTHO05D005447 9.9e-11 69.3 48 70.8
COL.COLO4_34650 Corchorus olitorius HOM05D002174 ORTHO05D005447 9.9e-11 69.3 48 72.9
Rhsim04G0234100 Rhododendron simsii HOM05D002174 ORTHO05D005447 9.9e-11 69.3 48 77.1
vmacro08063 Vaccinium macrocarpon HOM05D002174 ORTHO05D005447 9.9e-11 69.3 48 77.1
Glyma.07G241400 Glycine max HOM05D002174 ORTHO05D005447 1.3e-10 68.9 48 77.1
Os03g0305600 Oryza sativa ssp. japonica HOM05D002174 ORTHO05D005447 1.3e-10 68.9 48 72.9
Sc25g0003390 Simmondsia chinensis HOM05D002174 ORTHO05D005447 1.3e-10 68.9 48 75.0
SalBow8G1198 Salvia bowleyana HOM05D002174 ORTHO05D005447 2.2e-10 68.2 48 72.9
SalBow8G1617 Salvia bowleyana HOM05D002174 ORTHO05D005447 2.2e-10 68.2 48 72.9
CsaV3_6G022380 Cucumis sativus L. HOM05D002174 ORTHO05D005447 2.9e-10 67.8 48 75.0
THA.LOC104802605 Tarenaya hassleriana HOM05D002174 ORTHO05D005447 2.9e-10 67.8 49 71.4
EL10Ac3g05462 Beta vulgaris HOM05D002174 ORTHO05D005447 3.8e-10 67.4 48 72.9
Sed0011045 Sechium edule HOM05D002174 ORTHO05D005447 3.8e-10 67.4 48 70.8
Carub.0007s2539 Capsella rubella HOM05D002174 ORTHO05D005447 1.1e-09 65.9 49 73.5
CSS0046628 Camellia sinensis var. sinensis HOM05D002174 ORTHO05D005447 3.2e-09 64.3 48 75.0
Gohir.A09G235200 Gossypium hirsutum HOM05D002174 ORTHO05D005447 5.5e-09 63.5 48 66.7
Gohir.D09G236000 Gossypium hirsutum HOM05D002174 ORTHO05D005447 5.5e-09 63.5 48 66.7
Gorai.006G259100 Gossypium raimondii HOM05D002174 ORTHO05D005447 5.5e-09 63.5 48 66.7
AL7G38950 Arabidopsis lyrata HOM05D002174 ORTHO05D005447 7.1e-09 63.2 49 69.4
AT4G16160 Arabidopsis thaliana HOM05D002174 ORTHO05D005447 7.1e-09 63.2 49 69.4
BcaB04g18368 Brassica carinata HOM05D002174 ORTHO05D005447 7.1e-09 63.2 49 69.4
BcaC09g50313 Brassica carinata HOM05D002174 ORTHO05D005447 7.1e-09 63.2 49 69.4
A01p21400 Brassica napus HOM05D002174 ORTHO05D005447 7.1e-09 63.2 49 69.4
C01p26740 Brassica napus HOM05D002174 ORTHO05D005447 7.1e-09 63.2 49 69.4
BolC1t02615H Brassica oleracea HOM05D002174 ORTHO05D005447 7.1e-09 63.2 49 69.4
BraA01t02045Z Brassica rapa HOM05D002174 ORTHO05D005447 7.1e-09 63.2 49 69.4
MBI15_g25005_MAGBIO Magnolia biondii HOM05D002174 ORTHO05D005447 7.1e-09 63.2 48 64.6
ClCG06G004650 Citrullus lanatus HOM05D002174 ORTHO05D005447 9.3e-09 62.8 50 70.0
A08p12370 Brassica napus HOM05D002174 ORTHO05D005447 1.2e-08 62.4 49 67.3
BraA08t33218Z Brassica rapa HOM05D002174 ORTHO05D005447 1.2e-08 62.4 49 67.3
CARHR222530 Cardamine hirsuta HOM05D002174 ORTHO05D005447 1.6e-08 62.0 49 67.3
Thhalv10026380m.g Eutrema salsugineum HOM05D002174 ORTHO05D005447 1.6e-08 62.0 49 67.3
Sp7g14670 Schrenkiella parvula HOM05D002174 ORTHO05D005447 1.6e-08 62.0 49 67.3
BolC8t48340H Brassica oleracea HOM05D002174 ORTHO05D005447 2.1e-08 61.6 48 68.8
Gohir.A10G171200 Gossypium hirsutum HOM05D002174 ORTHO05D005447 6.0e-08 60.1 42 69.0
BcaC07g37960 Brassica carinata HOM05D002174 ORTHO05D005447 1.3e-07 58.9 48 66.7
Dinv15195 Davidia involucrata HOM05D002174 ORTHO05D005447 2.3e-07 58.2 33 87.9
Gohir.D10G178300 Gossypium hirsutum HOM05D002174 ORTHO05D005447 1.1e-06 55.8 42 66.7
Gorai.011G199300 Gossypium raimondii HOM05D002174 ORTHO05D005447 1.1e-06 55.8 42 66.7
MBI12_g12388_MAGBIO Magnolia biondii HOM05D002174 ORTHO05D005447 1.1e-06 55.8 47 59.6
Zm00001eb130200 Zea mays HOM05D002174 ORTHO05D005447 1.5e-06 55.5 49 61.2
Hund11960 Selenicereus undatus HOM05D002812 ORTHO05D003071 2.5e-06 54.7 48 64.6
MBI02_g25405_MAGBIO Magnolia biondii HOM05D002174 ORTHO05D005447 5.6e-06 53.5 47 59.6
Os01g0303300 Oryza sativa ssp. japonica HOM05D002174 ORTHO05D005447 5.6e-06 53.5 48 58.3


User provided reference genes

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