Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g00760 Coffea canephora HOM05D005046 ORTHO05D006194 1.4e-42 176.0 96 100.0
SGA_v2.0_scaffold104G30073 Striga asiatica HOM05D005046 ORTHO05D006194 3.5e-30 134.8 83 88.0
Ca_00977_v3 Cicer arietinum L. HOM05D005046 ORTHO05D006194 4.6e-30 134.4 83 88.0
HanXRQChr11g0353491 Helianthus annuus HOM05D005046 ORTHO05D006194 4.6e-30 134.4 83 91.6
Lalb_Chr18g0058661 Lupinus albus HOM05D005046 ORTHO05D006194 4.6e-30 134.4 83 90.4
Oeu001169.1 Olea europaea HOM05D005046 ORTHO05D006194 6.0e-30 134.0 83 90.4
CSS0005662 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 7.8e-30 133.7 83 90.4
CSS0011224 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 7.8e-30 133.7 83 90.4
CSS0039452 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 7.8e-30 133.7 83 90.4
Medtr2g034010 Medicago truncatula HOM05D005046 ORTHO05D006194 1.0e-29 133.3 83 89.2
Phvul.006G118400 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 1.0e-29 133.3 83 89.2
VMungo0540G1157 Vigna mungo HOM05D005046 ORTHO05D006194 1.0e-29 133.3 83 89.2
Lalb_Chr20g0120821 Lupinus albus HOM05D005046 ORTHO05D006194 1.3e-29 132.9 83 88.0
MSTRG.10153 Avicennia marina HOM05D005046 ORTHO05D006194 3.0e-29 131.7 83 88.0
TPR.G13743 Trifolium pratense HOM05D005046 ORTHO05D006194 3.9e-29 131.3 83 86.7
Psat1g160840 Pisum sativum HOM05D005046 ORTHO05D006194 6.6e-29 130.6 83 88.0
Lsat_1_v5_gn_1_41381 Lactuca sativa HOM05D005046 ORTHO05D006194 8.6e-29 130.2 83 89.2
MSTRG.24823 Avicennia marina HOM05D005046 ORTHO05D006194 1.1e-28 129.8 83 85.5
Glyma.15G139900 Glycine max HOM05D005046 ORTHO05D006194 1.1e-28 129.8 83 86.7
Glyma.17G033800 Glycine max HOM05D005046 ORTHO05D006194 1.5e-28 129.4 83 88.0
MD13G1153200 Malus domestica HOM05D005046 ORTHO05D006194 1.5e-28 129.4 83 88.0
MD16G1153600 Malus domestica HOM05D005046 ORTHO05D006194 1.9e-28 129.0 82 87.8
PGSC0003DMG400004620 Solanum tuberosum HOM05D005046 ORTHO05D006194 1.9e-28 129.0 83 88.0
Dinv44282 Davidia involucrata HOM05D005046 ORTHO05D006194 2.5e-28 128.6 83 88.0
Migut.G00065 Erythranthe guttata HOM05D005046 ORTHO05D006194 2.5e-28 128.6 83 84.3
Solyc12g099240.2 Solanum lycopersicum HOM05D005046 ORTHO05D006194 2.5e-28 128.6 83 86.7
Sopen12g033920 Solanum pennellii HOM05D005046 ORTHO05D006194 2.5e-28 128.6 83 86.7
Actinidia14256 Actinidia chinensis HOM05D005046 ORTHO05D006194 3.3e-28 128.3 83 86.7
Glyma.09G035300 Glycine max HOM05D005046 ORTHO05D006194 3.3e-28 128.3 83 85.5
Glyma.07G239500 Glycine max HOM05D005046 ORTHO05D006194 4.3e-28 127.9 83 86.7
arahy.Tifrunner.gnm1.ann1.4F0N5D Arachis hypogaea HOM05D005046 ORTHO05D006194 5.6e-28 127.5 83 84.3
arahy.Tifrunner.gnm1.ann1.KUZ2VC Arachis hypogaea HOM05D005046 ORTHO05D006194 5.6e-28 127.5 83 84.3
SalBow5G2652 Salvia bowleyana HOM05D005046 ORTHO05D006194 5.6e-28 127.5 83 83.1
Potri.010G146100 Populus trichocarpa HOM05D005046 ORTHO05D006194 7.3e-28 127.1 84 88.1
Dinv15163 Davidia involucrata HOM05D005046 ORTHO05D006194 9.5e-28 126.7 83 85.5
Nn3g21734 Nelumbo nucifera HOM05D005046 ORTHO05D006194 9.5e-28 126.7 83 86.7
Phvul.003G114500 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 9.5e-28 126.7 83 85.5
VMungo1215G0235 Vigna mungo HOM05D005046 ORTHO05D006194 9.5e-28 126.7 83 85.5
Lj6g0015111 Lotus japonicus HOM05D005046 ORTHO05D006194 1.2e-27 126.3 83 83.1
Sabra10G0112600 Salix brachista HOM05D005046 ORTHO05D006194 1.2e-27 126.3 84 85.7
TWI73G0015 Tripterygium wilfordii HOM05D005046 ORTHO05D006194 1.2e-27 126.3 83 85.5
Manes.15G000300 Manihot esculenta HOM05D005046 ORTHO05D006194 1.6e-27 125.9 84 88.1
HPP92_016092 Vanilla planifolia HOM05D005046 ORTHO05D006194 1.6e-27 125.9 83 86.7
Lj6A691T78 Lonicera japonica HOM05D005046 ORTHO05D006194 2.8e-27 125.2 83 85.5
Aqoxy5G02541 Aquilegia oxysepala HOM05D005046 ORTHO05D006194 4.7e-27 124.4 83 84.3
MELO3C021266.2 Cucumis melo HOM05D005046 ORTHO05D006194 4.7e-27 124.4 83 84.3
CsaV3_6G028590 Cucumis sativus L. HOM05D005046 ORTHO05D006194 4.7e-27 124.4 83 84.3
Actinidia13356 Actinidia chinensis HOM05D005046 ORTHO05D006194 6.2e-27 124.0 83 85.5
GSVIVG01034987001 Vitis vinifera HOM05D005046 ORTHO05D006194 6.2e-27 124.0 83 85.5
RcHm_v2.0_Chr4g0425361 Rosa chinensis HOM05D005046 ORTHO05D006194 1.1e-26 123.2 81 82.7
FvH4_4g19820 Fragaria vesca HOM05D005046 ORTHO05D006194 1.8e-26 122.5 81 82.7
FAN07G0875 Fragaria x ananassa HOM05D005046 ORTHO05D006194 1.8e-26 122.5 81 82.7
FAN12G2964 Fragaria x ananassa HOM05D005046 ORTHO05D006194 1.8e-26 122.5 81 82.7
Prupe.1G116800 Prunus persica HOM05D005046 ORTHO05D006194 1.8e-26 122.5 84 85.7
Actinidia18456 Actinidia chinensis HOM05D005046 ORTHO05D006194 2.3e-26 122.1 83 84.3
Actinidia40381 Actinidia chinensis HOM05D005046 ORTHO05D006194 2.3e-26 122.1 83 84.3
QL05p065557 Quercus lobata HOM05D005046 ORTHO05D006194 2.3e-26 122.1 83 85.5
Ciclev10006264m.g Citrus clementina HOM05D005046 ORTHO05D006194 3.1e-26 121.7 84 82.1
CAN.G484.64 Capsicum annuum HOM05D005046 ORTHO05D006194 4.0e-26 121.3 83 85.5
Nitab4.5_0000403g0120 Nicotiana tabacum HOM05D005046 ORTHO05D006194 4.0e-26 121.3 83 84.3
Sed0009015 Sechium edule HOM05D005046 ORTHO05D006194 4.0e-26 121.3 83 79.5
Sed0022816 Sechium edule HOM05D005046 ORTHO05D006194 4.0e-26 121.3 83 80.7
TAR636G1364 Trochodendron aralioides HOM05D005046 ORTHO05D006194 4.0e-26 121.3 83 84.3
unitig_749.g13361 Utricularia gibba HOM05D005046 ORTHO05D006194 4.0e-26 121.3 86 74.4
Cfa015310 Carpinus fangiana HOM05D005046 ORTHO05D006194 5.2e-26 120.9 84 84.5
Peaxi162Scf00228g00326 Petunia axillaris HOM05D005046 ORTHO05D006194 5.2e-26 120.9 83 84.3
Rhsim04G0239300 Rhododendron simsii HOM05D005046 ORTHO05D006194 6.8e-26 120.6 84 79.8
Aa31LG5G17170 Aethionema arabicum HOM05D005046 ORTHO05D006194 1.2e-25 119.8 84 81.0
Eucgr.H04047 Eucalyptus grandis HOM05D005046 ORTHO05D006194 1.2e-25 119.8 84 83.3
Gohir.D01G023544 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.5e-25 119.4 83 80.7
Gorai.002G030300 Gossypium raimondii HOM05D005046 ORTHO05D006194 1.5e-25 119.4 83 80.7
COL.COLO4_34610 Corchorus olitorius HOM05D005046 ORTHO05D006194 2.0e-25 119.0 83 80.7
Gorai.005G067500 Gossypium raimondii HOM05D005046 ORTHO05D006194 2.6e-25 118.6 83 79.5
PGR004G2877 Punica granatum HOM05D005046 ORTHO05D006194 2.6e-25 118.6 84 82.1
Gohir.A02G054900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 3.4e-25 118.2 83 79.5
Rhsim02G0003600 Rhododendron simsii HOM05D005046 ORTHO05D006194 3.4e-25 118.2 83 84.3
Gohir.A01G034600 Gossypium hirsutum HOM05D005046 ORTHO05D006194 4.4e-25 117.9 83 80.7
BNapus_Darmor_BZH_scaffold_118p00040 Brassica napus HOM05D005046 ORTHO05D006194 5.8e-25 117.5 84 79.8
Duzib212G1042 Durio zibethinus HOM05D005046 ORTHO05D006194 5.8e-25 117.5 83 79.5
Thecc.04G301400 Theobroma cacao HOM05D005046 ORTHO05D006194 5.8e-25 117.5 83 79.5
CARHR081150 Cardamine hirsuta HOM05D005046 ORTHO05D006194 7.5e-25 117.1 84 78.6
CiPaw.02G074700 Carya illinoinensis HOM05D005046 ORTHO05D006194 9.8e-25 116.7 80 82.5
vmacro08042 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 1.3e-24 116.3 84 78.6
AL3G17660 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 1.7e-24 115.9 84 78.6
AT3G06610 Arabidopsis thaliana HOM05D005046 ORTHO05D006194 1.7e-24 115.9 84 78.6
BraA01t04428Z Brassica rapa HOM05D005046 ORTHO05D006194 1.7e-24 115.9 84 78.6
CiPaw.01G138200 Carya illinoinensis HOM05D005046 ORTHO05D006194 1.7e-24 115.9 84 81.0
MBI18_g37558_MAGBIO Magnolia biondii HOM05D005046 ORTHO05D006194 1.7e-24 115.9 105 68.6
Thhalv10021793m.g Eutrema salsugineum HOM05D005046 ORTHO05D006194 2.2e-24 115.5 84 78.6
Os03g0832300 Oryza sativa ssp. japonica HOM05D005046 ORTHO05D006194 2.2e-24 115.5 76 82.9
A05p41430 Brassica napus HOM05D005046 ORTHO05D006194 3.7e-24 114.8 84 78.6
C05p60640 Brassica napus HOM05D005046 ORTHO05D006194 3.7e-24 114.8 84 78.6
BolC5t34723H Brassica oleracea HOM05D005046 ORTHO05D006194 3.7e-24 114.8 84 78.6
BraA05t22864Z Brassica rapa HOM05D005046 ORTHO05D006194 3.7e-24 114.8 84 78.6
Duzib052G0826 Durio zibethinus HOM05D005046 ORTHO05D006194 4.9e-24 114.4 83 77.1
Pp3c15_12430 Physcomitrium patens HOM05D005046 ORTHO05D006194 4.9e-24 114.4 81 80.2
THA.LOC104805014 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 4.9e-24 114.4 84 79.8
BolC1t05599H Brassica oleracea HOM05D005046 ORTHO05D006194 6.4e-24 114.0 84 77.4
PSO210G4010 Papaver somniferum HOM05D005046 ORTHO05D006194 6.4e-24 114.0 81 81.5
PSO761G0203 Papaver somniferum HOM05D005046 ORTHO05D006194 6.4e-24 114.0 81 81.5
Sp3g05540 Schrenkiella parvula HOM05D005046 ORTHO05D006194 6.4e-24 114.0 84 78.6
CDE02G0992 Ceratophyllum demersum HOM05D005046 ORTHO05D006194 8.3e-24 113.6 83 77.1
ClCG06G004560 Citrullus lanatus HOM05D005046 ORTHO05D006194 8.3e-24 113.6 99 69.7
CAN.G158.24 Capsicum annuum HOM05D005046 ORTHO05D006194 1.1e-23 113.2 83 79.5
BcaC05g30546 Brassica carinata HOM05D005046 ORTHO05D006194 1.4e-23 112.8 85 78.8
Carub.0003s0607 Capsella rubella HOM05D005046 ORTHO05D006194 2.4e-23 112.1 84 77.4
CANSAT78G2375 Cannabis sativa HOM05D005046 ORTHO05D006194 5.4e-23 110.9 86 73.3
ATR0693G376 Amborella trichopoda HOM05D005046 ORTHO05D006194 7.1e-23 110.5 72 86.1
Haze_01302 Corylus avellana HOM05D005046 ORTHO05D006194 7.1e-23 110.5 84 81.0
THA.LOC104818881 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 7.1e-23 110.5 84 76.2
Zm00001eb211320 Zea mays HOM05D005046 ORTHO05D006194 7.1e-23 110.5 73 83.6
Sabra08G0079200 Salix brachista HOM05D005046 ORTHO05D006194 2.7e-22 108.6 77 83.1
Potri.008G105000 Populus trichocarpa HOM05D005046 ORTHO05D006194 7.8e-22 107.1 84 77.4
SMO304G0028 Selaginella moellendorffii HOM05D005046 ORTHO05D006194 1.3e-21 106.3 80 72.5
Hund11979 Selenicereus undatus HOM05D005046 ORTHO05D006194 3.9e-21 104.8 83 72.3
Sc25g0003240 Simmondsia chinensis HOM05D005046 ORTHO05D006194 3.9e-21 104.8 83 73.5
Nitab4.5_0000496g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 6.6e-21 104.0 83 74.7
AagrBONN_evm.TU.Sc2ySwM_368.969 Anthoceros agrestis HOM05D005046 ORTHO05D006194 1.1e-20 103.2 72 79.2
ECA240G2346 Erigeron canadensis HOM05D005046 ORTHO05D006194 1.9e-20 102.4 72 83.3
AagrBONN_evm.TU.Sc2ySwM_368.976 Anthoceros agrestis HOM05D005046 ORTHO05D006194 4.3e-20 101.3 72 77.8
PSO063G6303 Papaver somniferum HOM05D005046 ORTHO05D006194 7.3e-20 100.5 81 69.1
EL10Ac3g05511 Beta vulgaris HOM05D005046 ORTHO05D006194 1.6e-19 99.4 83 68.7
AUR62016211 Chenopodium quinoa HOM05D005046 ORTHO05D006194 3.6e-19 98.2 85 68.2
Ah.13g071840 Amaranthus hybridus HOM05D005046 ORTHO05D006194 5.2e-18 94.4 83 65.1
AUR62039277 Chenopodium quinoa HOM05D005046 ORTHO05D006194 2.0e-17 92.4 83 63.9
TAR365G1002 Trochodendron aralioides HOM05D005046 ORTHO05D006194 2.0e-17 92.4 61 85.2
Mapoly0010s0169 Marchantia polymorpha HOM05D005046 ORTHO05D006194 2.6e-17 92.0 84 66.7
PSO017G4602 Papaver somniferum HOM05D005046 ORTHO05D006194 2.6e-17 92.0 81 69.1
vmacro15180 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 9.9e-17 90.1 155 47.1
DCAR_026983 Daucus carota HOM05D005046 ORTHO05D006194 8.3e-16 87.0 59 86.4
CBR_g51449 Chara braunii HOM05D005046 ORTHO05D006194 3.2e-15 85.1 71 66.2
Nitab4.5_0002150g0070 Nicotiana tabacum HOM05D005046 ORTHO05D006194 5.4e-15 84.3 83 63.9
RcHm_v2.0_Chr5g0023271 Rosa chinensis HOM05D005046 ORTHO05D006194 5.4e-15 84.3 62 75.8
Lj5g0009192 Lotus japonicus HOM05D005046 ORTHO05D006194 6.0e-14 80.9 88 54.5
AL3G18870 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 3.9e-13 78.2 61 73.8
Lj1g0019312 Lotus japonicus HOM05D005046 ORTHO05D006194 3.9e-13 78.2 65 66.2
Nitab4.5_0002294g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 3.9e-13 78.2 86 59.3
SEGI_33495 Sequoiadendron giganteum HOM05D005046 ORTHO05D006194 1.1e-12 76.6 62 72.6
BcaC09g47907 Brassica carinata HOM05D005046 ORTHO05D006194 7.3e-12 73.9 84 57.1
Manes.03G205301 Manihot esculenta HOM05D005046 ORTHO05D006194 1.2e-11 73.2 61 68.9
Atru.chr4.2993 Acer truncatum HOM05D005046 ORTHO05D006194 4.0e-10 68.2 54 74.1
Gohir.D02G059900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 2.4e-07 58.9 41 80.5


User provided reference genes

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