Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g00710 Coffea canephora HOM05D004819 ORTHO05D005654 0.0e+00 1593.6 801 100.0
CSS0034063 Camellia sinensis var. sinensis HOM05D004819 ORTHO05D005654 0.0e+00 1328.5 788 81.9
Lj3C833T2 Lonicera japonica HOM05D004819 ORTHO05D005654 0.0e+00 1325.5 789 83.1
Oeu046577.1 Olea europaea HOM05D004819 ORTHO05D005654 0.0e+00 1324.3 809 81.6
PGSC0003DMG400001205 Solanum tuberosum HOM05D004819 ORTHO05D005654 0.0e+00 1322.0 795 80.8
MSTRG.10156 Avicennia marina HOM05D004819 ORTHO05D005654 0.0e+00 1320.4 795 81.1
Solyc01g058730.4 Solanum lycopersicum HOM05D004819 ORTHO05D005654 0.0e+00 1320.1 780 81.7
Sopen01g024570 Solanum pennellii HOM05D004819 ORTHO05D005654 0.0e+00 1316.2 781 81.6
Nitab4.5_0000931g0050 Nicotiana tabacum HOM05D004819 ORTHO05D005654 0.0e+00 1313.9 781 81.9
Actinidia40384 Actinidia chinensis HOM05D004819 ORTHO05D005654 0.0e+00 1312.4 791 81.5
DCAR_030463 Daucus carota HOM05D004819 ORTHO05D005654 0.0e+00 1312.4 791 81.5
GSVIVG01034978001 Vitis vinifera HOM05D004819 ORTHO05D005654 0.0e+00 1310.4 789 81.4
Peaxi162Scf00228g00333 Petunia axillaris HOM05D004819 ORTHO05D005654 0.0e+00 1302.7 788 80.2
TAR365G0460 Trochodendron aralioides HOM05D004819 ORTHO05D005654 0.0e+00 1301.6 781 81.3
Ciclev10004336m.g Citrus clementina HOM05D004819 ORTHO05D005654 0.0e+00 1297.7 781 80.8
PGR004G0637 Punica granatum HOM05D004819 ORTHO05D005654 0.0e+00 1295.4 781 79.9
Rhsim04G0240100 Rhododendron simsii HOM05D004819 ORTHO05D005654 0.0e+00 1295.4 787 80.4
Oeu052162.4 Olea europaea HOM05D004819 ORTHO05D005654 0.0e+00 1293.9 835 77.4
Cfa015302 Carpinus fangiana HOM05D004819 ORTHO05D005654 0.0e+00 1288.1 789 79.3
Manes.03G205800 Manihot esculenta HOM05D004819 ORTHO05D005654 0.0e+00 1284.6 790 79.6
Migut.G00071 Erythranthe guttata HOM05D004819 ORTHO05D005654 0.0e+00 1283.1 795 79.1
Prupe.1G115700 Prunus persica HOM05D004819 ORTHO05D005654 0.0e+00 1282.7 788 78.8
FvH4_4g19930 Fragaria vesca HOM05D004819 ORTHO05D005654 0.0e+00 1282.3 785 78.5
MD16G1152500 Malus domestica HOM05D004819 ORTHO05D005654 0.0e+00 1281.9 787 78.8
FAN12G0990 Fragaria x ananassa HOM05D004819 ORTHO05D005654 0.0e+00 1280.0 785 78.2
Atru.chr4.3039 Acer truncatum HOM05D004819 ORTHO05D005654 0.0e+00 1279.2 795 78.2
FAN07G2526 Fragaria x ananassa HOM05D004819 ORTHO05D005654 0.0e+00 1278.8 785 78.2
SGA_v2.0_scaffold104G30069 Striga asiatica HOM05D004819 ORTHO05D005654 0.0e+00 1273.5 804 78.9
ClCG05G006610 Citrullus lanatus HOM05D004819 ORTHO05D005654 0.0e+00 1271.1 787 78.7
RcHm_v2.0_Chr4g0425571 Rosa chinensis HOM05D004819 ORTHO05D005654 0.0e+00 1267.3 790 77.3
arahy.Tifrunner.gnm1.ann1.ZA4S8T Arachis hypogaea HOM05D004819 ORTHO05D005654 0.0e+00 1265.0 787 78.4
Thecc.04G302500 Theobroma cacao HOM05D004819 ORTHO05D005654 0.0e+00 1265.0 778 78.7
Glyma.07G238900 Glycine max HOM05D004819 ORTHO05D005654 0.0e+00 1263.8 787 78.4
Phvul.003G115600 Phaseolus vulgaris HOM05D004819 ORTHO05D005654 0.0e+00 1263.8 788 78.2
TWI09G1587 Tripterygium wilfordii HOM05D004819 ORTHO05D005654 0.0e+00 1263.8 787 77.6
arahy.Tifrunner.gnm1.ann1.HD9JLY Arachis hypogaea HOM05D004819 ORTHO05D005654 0.0e+00 1263.4 787 78.3
Duzib212G0926 Durio zibethinus HOM05D004819 ORTHO05D005654 0.0e+00 1260.0 779 78.3
Aqoxy2G02702 Aquilegia oxysepala HOM05D004819 ORTHO05D005654 0.0e+00 1258.8 787 78.5
Gohir.D10G179600 Gossypium hirsutum HOM05D004819 ORTHO05D005654 0.0e+00 1257.7 785 77.8
Potri.010G146800 Populus trichocarpa HOM05D004819 ORTHO05D005654 0.0e+00 1257.3 787 76.7
VMungo1215G1911 Vigna mungo HOM05D004819 ORTHO05D005654 0.0e+00 1255.7 791 77.4
Manes.15G000800 Manihot esculenta HOM05D004819 ORTHO05D005654 0.0e+00 1253.8 791 77.7
SalBow8G2376 Salvia bowleyana HOM05D004819 ORTHO05D005654 0.0e+00 1253.8 825 75.4
Sed0001798 Sechium edule HOM05D004819 ORTHO05D005654 0.0e+00 1253.0 787 78.1
Cpa.g.sc9.47 Carica papaya HOM05D004819 ORTHO05D005654 0.0e+00 1251.9 800 76.9
CsaV3_3G015230 Cucumis sativus L. HOM05D004819 ORTHO05D005654 0.0e+00 1251.1 787 77.6
PSO761G0636 Papaver somniferum HOM05D004819 ORTHO05D005654 0.0e+00 1250.7 781 77.2
Ca_21436_v3 Cicer arietinum L. HOM05D004819 ORTHO05D005654 0.0e+00 1250.0 787 76.9
Gorai.011G200900 Gossypium raimondii HOM05D004819 ORTHO05D005654 0.0e+00 1250.0 786 77.5
PSO210G2958 Papaver somniferum HOM05D004819 ORTHO05D005654 0.0e+00 1250.0 781 77.7
Lj4g0007943 Lotus japonicus HOM05D004819 ORTHO05D005654 0.0e+00 1248.4 787 77.6
Sabra10G0113000 Salix brachista HOM05D004819 ORTHO05D005654 0.0e+00 1248.4 814 74.6
Eucgr.H04055 Eucalyptus grandis HOM05D004819 ORTHO05D005654 0.0e+00 1247.6 781 77.2
QL06p012610 Quercus lobata HOM05D004819 ORTHO05D005654 0.0e+00 1247.3 790 77.2
COL.COLO4_34600 Corchorus olitorius HOM05D004819 ORTHO05D005654 0.0e+00 1244.6 777 76.7
Lalb_Chr07g0182051 Lupinus albus HOM05D004819 ORTHO05D005654 0.0e+00 1241.1 787 75.9
CANSAT78G1713 Cannabis sativa HOM05D004819 ORTHO05D005654 0.0e+00 1240.3 797 76.3
Glyma.17G034800 Glycine max HOM05D004819 ORTHO05D005654 0.0e+00 1239.6 802 75.8
TPR.G25430 Trifolium pratense HOM05D004819 ORTHO05D005654 0.0e+00 1239.2 787 76.0
ECA233G5711 Erigeron canadensis HOM05D004819 ORTHO05D005654 0.0e+00 1238.0 794 76.7
Lsat_1_v5_gn_6_1101 Lactuca sativa HOM05D004819 ORTHO05D005654 0.0e+00 1236.9 790 77.1
CiPaw.01G137100 Carya illinoinensis HOM05D004819 ORTHO05D005654 0.0e+00 1233.8 788 76.8
Sc09g0007260 Simmondsia chinensis HOM05D004819 ORTHO05D005654 0.0e+00 1229.9 794 74.2
Psat4g022840 Pisum sativum HOM05D004819 ORTHO05D005654 0.0e+00 1225.3 794 75.1
THA.LOC104802608 Tarenaya hassleriana HOM05D004819 ORTHO05D005654 0.0e+00 1223.4 777 75.4
Sed0007022 Sechium edule HOM05D004819 ORTHO05D005654 0.0e+00 1219.9 787 75.2
EL10Ac3g05522 Beta vulgaris HOM05D004819 ORTHO05D005654 0.0e+00 1204.1 780 73.6
HanXRQChr02g0048601 Helianthus annuus HOM05D004819 ORTHO05D005654 0.0e+00 1198.3 788 74.2
Gohir.A10G173100 Gossypium hirsutum HOM05D004819 ORTHO05D005654 0.0e+00 1192.6 733 79.4
Lsat_1_v5_gn_1_41600 Lactuca sativa HOM05D004819 ORTHO05D005654 0.0e+00 1187.9 789 73.8
MELO3C006720.2 Cucumis melo HOM05D004819 ORTHO05D005654 0.0e+00 1181.8 799 73.8
Nn2g14951 Nelumbo nucifera HOM05D004819 ORTHO05D005654 0.0e+00 1180.6 733 78.6
Sp7g14690 Schrenkiella parvula HOM05D004819 ORTHO05D005654 0.0e+00 1179.5 779 72.4
C07p47720 Brassica napus HOM05D004819 ORTHO05D005654 0.0e+00 1174.1 779 72.0
Thhalv10024420m.g Eutrema salsugineum HOM05D004819 ORTHO05D005654 0.0e+00 1174.1 779 72.1
BcaC06g33458 Brassica carinata HOM05D004819 ORTHO05D005654 0.0e+00 1172.9 779 71.9
A03p49650 Brassica napus HOM05D004819 ORTHO05D005654 0.0e+00 1172.9 779 71.9
Haze_01312 Corylus avellana HOM05D004819 ORTHO05D005654 0.0e+00 1172.9 825 71.6
AL7G38910 Arabidopsis lyrata HOM05D004819 ORTHO05D005654 0.0e+00 1172.1 779 72.1
C01p26720 Brassica napus HOM05D004819 ORTHO05D005654 0.0e+00 1171.8 779 72.5
CARHR222550 Cardamine hirsuta HOM05D004819 ORTHO05D005654 0.0e+00 1170.2 779 72.4
BcaC06g32994 Brassica carinata HOM05D004819 ORTHO05D005654 0.0e+00 1169.5 779 71.8
BcaC09g50317 Brassica carinata HOM05D004819 ORTHO05D005654 0.0e+00 1168.3 779 72.4
AT4G16180 Arabidopsis thaliana HOM05D004819 ORTHO05D005654 0.0e+00 1167.5 779 71.8
Carub.0007s2536 Capsella rubella HOM05D004819 ORTHO05D005654 0.0e+00 1167.1 779 71.9
A01p21370 Brassica napus HOM05D004819 ORTHO05D005654 0.0e+00 1166.8 779 72.0
BolC1t02613H Brassica oleracea HOM05D004819 ORTHO05D005654 0.0e+00 1165.6 781 72.2
Aa31LG10G5910 Aethionema arabicum HOM05D004819 ORTHO05D005654 0.0e+00 1164.1 799 70.8
BraA01t02042Z Brassica rapa HOM05D004819 ORTHO05D005654 0.0e+00 1164.1 781 72.0
BolC7t45297H Brassica oleracea HOM05D004819 ORTHO05D005654 0.0e+00 1162.9 789 70.8
BcaNung00215 Brassica carinata HOM05D004819 ORTHO05D005654 0.0e+00 1162.1 779 71.9
Zm00001eb014900 Zea mays HOM05D004819 ORTHO05D005654 0.0e+00 1161.4 795 71.2
BraA03t14064Z Brassica rapa HOM05D004819 ORTHO05D005654 0.0e+00 1161.0 799 70.1
Hund03132 Selenicereus undatus HOM05D004819 ORTHO05D005654 0.0e+00 1160.2 811 69.9
Ah.05g176730 Amaranthus hybridus HOM05D004819 ORTHO05D005654 0.0e+00 1151.0 746 74.0
ATR0693G033 Amborella trichopoda HOM05D004819 ORTHO05D005654 0.0e+00 1146.0 940 61.9
AUR62039265 Chenopodium quinoa HOM05D004819 ORTHO05D005654 0.0e+00 1144.4 780 70.9
AUR62016223 Chenopodium quinoa HOM05D004819 ORTHO05D005654 0.0e+00 1141.3 725 75.4
Nn4g25546 Nelumbo nucifera HOM05D004819 ORTHO05D005654 0.0e+00 1133.6 788 72.8
HanXRQChr11g0353871 Helianthus annuus HOM05D004819 ORTHO05D005654 0.0e+00 1133.2 795 70.3
CDE02G0522 Ceratophyllum demersum HOM05D004819 ORTHO05D005654 0.0e+00 1122.8 756 73.4
vmacro08030 Vaccinium macrocarpon HOM05D004819 ORTHO05D005654 0.0e+00 1104.4 705 77.9
Dinv15153 Davidia involucrata HOM05D004819 ORTHO05D005654 0.0e+00 1087.0 644 83.1
unitig_88.g27704 Utricularia gibba HOM05D002812 ORTHO05D005654 0.0e+00 1085.5 804 67.8
TWI53G0610 Tripterygium wilfordii HOM05D004819 ORTHO05D005654 1.3e-298 1029.6 691 74.5
Mapoly0066s0100 Marchantia polymorpha HOM05D004819 ORTHO05D005654 1.3e-271 939.9 808 57.9
AagrBONN_evm.TU.Sc2ySwM_362.583 Anthoceros agrestis HOM05D004819 ORTHO05D005654 1.2e-261 906.7 795 56.7
Pp3c5_14560 Physcomitrium patens HOM05D004819 ORTHO05D005654 5.7e-251 871.3 798 52.9
SMO298G0056 Selaginella moellendorffii HOM05D004819 ORTHO05D005654 3.5e-240 835.5 791 54.1
Nitab4.5_0000177g0090 Nicotiana tabacum HOM05D004819 ORTHO05D005654 2.0e-227 793.1 519 76.7
SHI00126 Sapria himalayana HOM05D004819 ORTHO05D005654 6.6e-199 698.4 505 66.5
Pp3c16_6520 Physcomitrium patens HOM05D004819 ORTHO05D005654 3.0e-191 672.9 620 52.7
CBR_g61507 Chara braunii HOM05D004819 ORTHO05D005654 1.6e-176 624.0 795 41.5
GSVIVG01034917001 Vitis vinifera HOM05D004819 ORTHO05D005654 1.6e-157 560.8 640 50.3
Eucgr.H04185 Eucalyptus grandis HOM05D004819 ORTHO05D005654 2.9e-154 550.1 374 74.6
GSVIVG01034925001 Vitis vinifera HOM05D004819 ORTHO05D005654 6.9e-140 502.3 710 42.8
Os03g0310500 Oryza sativa ssp. japonica HOM05D004819 ORTHO05D005654 1.0e-138 498.4 336 72.6
MCO15G339 Micromonas commoda HOM05D004819 ORTHO05D005654 2.7e-115 420.6 826 33.4
Zm00001eb339670 Zea mays HOM05D004819 ORTHO05D005654 1.6e-96 358.2 241 73.0
CAN.G244.3 Capsicum annuum HOM05D004819 ORTHO05D005654 7.5e-86 322.8 176 87.5
SHI00124 Sapria himalayana HOM05D004819 ORTHO05D005654 1.2e-83 315.5 314 54.5
GSVIVG01034928001 Vitis vinifera HOM05D004819 ORTHO05D005654 1.5e-78 298.5 191 79.6
HPP92_005423 Vanilla planifolia HOM05D004819 ORTHO05D005654 4.9e-77 293.5 247 57.1
Nn2g14956 Nelumbo nucifera HOM05D004819 ORTHO05D005654 3.1e-71 274.2 194 72.2
HPP92_005425 Vanilla planifolia HOM05D004819 ORTHO05D005654 4.0e-71 273.9 208 65.9
PRCOL_00001897 Prasinoderma coloniale HOM05D004819 ORTHO05D005654 1.7e-66 258.5 795 27.2
Actinidia18457 Actinidia chinensis HOM05D004819 ORTHO05D005654 9.9e-62 242.7 215 60.0
Zm00001eb269880 Zea mays HOM05D004819 ORTHO05D005654 1.3e-58 232.3 164 69.5
Zm00001eb331620 Zea mays HOM05D004819 ORTHO05D005654 1.3e-58 232.3 164 69.5
Zm00001eb305610 Zea mays HOM05D004819 ORTHO05D005654 8.4e-53 213.0 143 73.4
CSS0017759 Camellia sinensis var. sinensis HOM05D004819 ORTHO05D005654 4.2e-52 210.7 166 66.3
CSS0032110 Camellia sinensis var. sinensis HOM05D004819 ORTHO05D005654 1.5e-49 202.2 158 67.1
Cre10.g463300 Chlamydomonas reinhardtii HOM05D004819 ORTHO05D005654 2.4e-47 194.9 737 24.4
PGSC0003DMG402014601 Solanum tuberosum HOM05D004819 ORTHO05D005654 9.7e-41 172.9 121 73.6
SEGI_02776 Sequoiadendron giganteum HOM05D004819 ORTHO05D005654 8.2e-40 169.9 144 56.2
Potri.008G104100 Populus trichocarpa HOM05D004819 ORTHO05D005654 1.1e-33 149.4 94 77.7
EL10Ac4g08939 Beta vulgaris HOM05D004819 ORTHO05D005654 1.5e-33 149.1 111 66.7
Rhsim05G0134500 Rhododendron simsii HOM05D004819 ORTHO05D005654 3.3e-33 147.9 175 52.0
vmacro08031 Vaccinium macrocarpon HOM05D004819 ORTHO05D005654 2.6e-30 138.3 204 38.7
Zm00001eb168500 Zea mays HOM05D004819 ORTHO05D005654 3.8e-29 134.4 91 72.5
CSS0026249 Camellia sinensis var. sinensis HOM05D004819 ORTHO05D005654 3.2e-28 131.3 97 74.2
ECA234G0649 Erigeron canadensis HOM05D004819 ORTHO05D005654 7.2e-28 130.2 112 58.9
GSVIVG01034914001 Vitis vinifera HOM05D004819 ORTHO05D005654 7.4e-25 120.2 67 86.6
RcHm_v2.0_Chr4g0401771 Rosa chinensis HOM05D004819 ORTHO05D005654 1.3e-24 119.4 106 60.4
Sabra15G0067600 Salix brachista HOM05D004819 ORTHO05D005654 1.2e-22 112.8 93 62.4
Psat0s6958g0040 Pisum sativum HOM05D004819 ORTHO05D005654 2.0e-22 112.1 75 69.3
SEGI_30135 Sequoiadendron giganteum HOM05D004819 ORTHO05D005654 6.5e-21 107.1 83 66.3
Lsat_1_v5_gn_9_59160 Lactuca sativa HOM05D004819 ORTHO05D005654 1.2e-19 102.8 66 72.7
Psat0s3230g0160 Pisum sativum HOM05D004819 ORTHO05D005654 1.8e-18 99.0 61 78.7
HPP92_005424 Vanilla planifolia HOM05D004819 ORTHO05D005654 9.1e-15 86.7 101 48.5
ATR0345G001 Amborella trichopoda HOM05D004819 ORTHO05D005654 5.9e-14 84.0 55 70.9
GSVIVG01034916001 Vitis vinifera HOM05D006035 ORTHO05D007155 1.0e-13 83.2 54 66.7
SHI04174 Sapria himalayana HOM05D007118 ORTHO05D008957 2.9e-13 81.6 453 23.0
Pp3c3_25440 Physcomitrium patens HOM05D007118 ORTHO05D008957 5.5e-12 77.4 444 22.1
Mapoly0051s0046 Marchantia polymorpha HOM05D007118 ORTHO05D008957 1.2e-11 76.3 439 19.8
GSVIVG01034918001 Vitis vinifera HOM05D004819 ORTHO05D005654 1.4e-10 72.8 44 75.0
Zm00001eb385570 Zea mays HOM05D007118 ORTHO05D008957 5.2e-10 70.9 510 19.4
Sc14g0006000 Simmondsia chinensis HOM05D007118 ORTHO05D008957 4.4e-09 67.8 509 20.0
Zm00001eb240720 Zea mays HOM05D005244 ORTHO05D006539 5.7e-09 67.4 368 20.9
SMO071G0001 Selaginella moellendorffii HOM05D007118 ORTHO05D008957 1.7e-08 65.9 479 20.7
SMO244G0043 Selaginella moellendorffii HOM05D007118 ORTHO05D008957 1.7e-08 65.9 479 20.5
CBR_g8886 Chara braunii HOM05D007118 ORTHO05D008957 8.2e-08 63.5 280 24.3
Os06g0584200 Oryza sativa ssp. japonica HOM05D007118 ORTHO05D008957 1.1e-07 63.2 177 24.3
Solyc02g087720.1 Solanum lycopersicum HOM05D007118 ORTHO05D008957 1.4e-07 62.8 151 25.8
Sopen02g032450 Solanum pennellii HOM05D007118 ORTHO05D008957 3.1e-07 61.6 151 25.2
PGSC0003DMG400018098 Solanum tuberosum HOM05D007118 ORTHO05D008957 3.1e-07 61.6 151 25.2
ATR1120G196 Amborella trichopoda HOM05D007118 ORTHO05D008957 4.1e-07 61.2 178 23.0
Manes.15G176912 Manihot esculenta HOM05D007118 ORTHO05D008957 4.1e-07 61.2 485 20.4
Actinidia02527 Actinidia chinensis HOM05D005244 ORTHO05D006539 5.3e-07 60.8 488 22.1
CAN.G206.124 Capsicum annuum HOM05D007118 ORTHO05D008957 7.0e-07 60.5 151 23.8
CDE04G1934 Ceratophyllum demersum HOM05D007118 ORTHO05D008957 9.1e-07 60.1 162 22.2
Sed0001669 Sechium edule HOM05D007118 ORTHO05D008957 1.2e-06 59.7 228 22.4
THA.LOC104805448 Tarenaya hassleriana HOM05D007118 ORTHO05D008957 2.0e-06 58.9 228 21.1
Hund13237 Selenicereus undatus HOM05D007118 ORTHO05D008957 2.7e-06 58.5 388 21.4
Lj2g0016843 Lotus japonicus HOM05D005244 ORTHO05D006539 3.5e-06 58.2 366 19.7
TWI32G0076 Tripterygium wilfordii HOM05D007118 ORTHO05D008957 3.5e-06 58.2 163 23.3
TWI32G0789 Tripterygium wilfordii HOM05D007118 ORTHO05D008957 3.5e-06 58.2 163 23.3
Potri.006G080700 Populus trichocarpa HOM05D005244 ORTHO05D006539 4.5e-06 57.8 462 21.6
SMO244G0031 Selaginella moellendorffii HOM05D007118 ORTHO05D008957 5.9e-06 57.4 185 24.3
TWI60G1543 Tripterygium wilfordii HOM05D007118 ORTHO05D008957 5.9e-06 57.4 163 22.7
TAR629G0502 Trochodendron aralioides HOM05D007118 ORTHO05D008957 5.9e-06 57.4 148 24.3
BcaC06g33635 Brassica carinata HOM05D001960 ORTHO05D008957 7.7e-06 57.0 212 22.2
Duzib147G0587 Durio zibethinus HOM05D007118 ORTHO05D008957 7.7e-06 57.0 151 22.5
Sabra17G0069800 Salix brachista HOM05D007118 ORTHO05D008957 7.7e-06 57.0 163 22.7


User provided reference genes

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