Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g00630 Coffea canephora HOM05D003564 ORTHO05D028498 1.9e-56 222.2 107 100.0
Sopen01g023960 Solanum pennellii HOM05D003564 ORTHO05D005332 6.6e-54 213.8 107 94.4
Solyc01g058390.3 Solanum lycopersicum HOM05D003564 ORTHO05D005332 1.9e-53 212.2 107 93.5
Duzib212G0473 Durio zibethinus HOM05D003564 ORTHO05D005332 2.5e-53 211.8 106 95.3
PGSC0003DMG400017095 Solanum tuberosum HOM05D003564 ORTHO05D005332 2.5e-53 211.8 107 92.5
Oeu046580.1 Olea europaea HOM05D003564 ORTHO05D005332 3.3e-53 211.5 107 91.6
Actinidia18464 Actinidia chinensis HOM05D003564 ORTHO05D005332 4.3e-53 211.1 106 94.3
CSS0008875 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D005332 7.3e-53 210.3 105 94.3
Actinidia13349 Actinidia chinensis HOM05D003564 ORTHO05D005332 1.2e-52 209.5 107 90.7
Lj6A693T63 Lonicera japonica HOM05D003564 ORTHO05D005332 1.2e-52 209.5 107 93.5
Hma1.2p1_0013F.1_g008310 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 1.6e-52 209.1 107 92.5
Nitab4.5_0005111g0010 Nicotiana tabacum HOM05D003564 ORTHO05D005332 1.6e-52 209.1 107 92.5
vmacro15172 Vaccinium macrocarpon HOM05D003564 ORTHO05D005332 2.1e-52 208.8 107 92.5
PSO724G1094 Papaver somniferum HOM05D003564 ORTHO05D005332 2.8e-52 208.4 107 92.5
COL.COLO4_34584 Corchorus olitorius HOM05D003564 ORTHO05D005332 3.6e-52 208.0 106 92.5
Rhsim02G0002600 Rhododendron simsii HOM05D003564 ORTHO05D005332 3.6e-52 208.0 107 91.6
DCAR_023360 Daucus carota HOM05D003564 ORTHO05D005332 6.2e-52 207.2 106 91.5
Oeu001157.1 Olea europaea HOM05D003564 ORTHO05D005332 6.2e-52 207.2 107 90.7
CAN.G281.5 Capsicum annuum HOM05D003564 ORTHO05D005332 8.1e-52 206.8 107 91.6
CAN.G311.70 Capsicum annuum HOM05D003564 ORTHO05D028498 8.1e-52 206.8 107 90.7
Ca_21413_v3 Cicer arietinum L. HOM05D003564 ORTHO05D005332 8.1e-52 206.8 107 90.7
Glyma.07G237700 Glycine max HOM05D003564 ORTHO05D005332 8.1e-52 206.8 107 91.6
Glyma.17G035800 Glycine max HOM05D003564 ORTHO05D005332 8.1e-52 206.8 107 91.6
Lj4g0010100 Lotus japonicus HOM05D003564 ORTHO05D005332 8.1e-52 206.8 106 91.5
Lalb_Chr12g0200801 Lupinus albus HOM05D003564 ORTHO05D005332 1.1e-51 206.5 107 91.6
Nitab4.5_0000655g0040 Nicotiana tabacum HOM05D003564 ORTHO05D005332 1.1e-51 206.5 107 91.6
PSO421G0363 Papaver somniferum HOM05D003564 ORTHO05D005332 1.1e-51 206.5 105 92.4
PSO673G0015 Papaver somniferum HOM05D003564 ORTHO05D005332 1.1e-51 206.5 105 92.4
Peaxi162Scf00164g00106 Petunia axillaris HOM05D003564 ORTHO05D005332 1.1e-51 206.5 107 88.8
PGR004G2289 Punica granatum HOM05D003564 ORTHO05D005332 1.1e-51 206.5 107 89.7
MSTRG.24826 Avicennia marina HOM05D003564 ORTHO05D005332 1.4e-51 206.1 107 89.7
Sed0006353 Sechium edule HOM05D003564 ORTHO05D005332 1.4e-51 206.1 106 89.6
Gohir.A09G241000 Gossypium hirsutum HOM05D003564 ORTHO05D005332 1.8e-51 205.7 106 90.6
Gohir.D09G241800 Gossypium hirsutum HOM05D003564 ORTHO05D005332 1.8e-51 205.7 106 90.6
Gorai.006G265300 Gossypium raimondii HOM05D003564 ORTHO05D005332 1.8e-51 205.7 106 90.6
Peaxi162Scf00228g00614 Petunia axillaris HOM05D003564 ORTHO05D005332 1.8e-51 205.7 107 90.7
GSVIVG01034964001 Vitis vinifera HOM05D003564 ORTHO05D005332 1.8e-51 205.7 107 90.7
SGA_v2.0_scaffold227G43230 Striga asiatica HOM05D003564 ORTHO05D005332 2.3e-51 205.3 106 90.6
MSTRG.21761 Avicennia marina HOM05D003564 ORTHO05D005332 3.1e-51 204.9 106 89.6
Migut.N00033 Erythranthe guttata HOM05D003564 ORTHO05D005332 3.1e-51 204.9 107 89.7
TWI09G1018 Tripterygium wilfordii HOM05D003564 ORTHO05D005332 4.0e-51 204.5 106 89.6
Ciclev10004815m.g Citrus clementina HOM05D003564 ORTHO05D005332 5.2e-51 204.1 106 90.6
Potri.008G102800 Populus trichocarpa HOM05D003564 ORTHO05D005332 5.2e-51 204.1 106 90.6
Rhsim04G0241100 Rhododendron simsii HOM05D003564 ORTHO05D005332 6.8e-51 203.8 107 89.7
Nn3g21762 Nelumbo nucifera HOM05D003564 ORTHO05D005332 8.9e-51 203.4 106 88.7
VMungo1215G0911 Vigna mungo HOM05D003564 ORTHO05D005332 8.9e-51 203.4 106 90.6
Lalb_Chr07g0181971 Lupinus albus HOM05D003564 ORTHO05D005332 1.2e-50 203.0 107 88.8
MD13G1150000 Malus domestica HOM05D003564 ORTHO05D005332 1.2e-50 203.0 106 87.7
MD16G1150400 Malus domestica HOM05D003564 ORTHO05D005332 1.2e-50 203.0 106 89.6
Manes.03G206800 Manihot esculenta HOM05D003564 ORTHO05D005332 1.2e-50 203.0 106 89.6
Manes.15G001800 Manihot esculenta HOM05D003564 ORTHO05D005332 1.2e-50 203.0 106 89.6
SalBow5G4452 Salvia bowleyana HOM05D003564 ORTHO05D005332 2.0e-50 202.2 107 87.9
vmacro07948 Vaccinium macrocarpon HOM05D003564 ORTHO05D005332 2.0e-50 202.2 107 89.7
Hma1.2p1_0078F.1_g039870 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 2.6e-50 201.8 107 88.8
Hma1.2p1_1400F.1_g280900 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 2.6e-50 201.8 107 88.8
TAR633G1064 Trochodendron aralioides HOM05D003564 ORTHO05D005332 2.6e-50 201.8 107 86.0
Potri.010G148100 Populus trichocarpa HOM05D003564 ORTHO05D005332 3.4e-50 201.4 106 88.7
SGA_v2.0_scaffold367G50068 Striga asiatica HOM05D003564 ORTHO05D005332 3.4e-50 201.4 106 85.8
ClCG05G006670 Citrullus lanatus HOM05D003564 ORTHO05D005332 4.4e-50 201.1 106 86.8
CsaV3_3G015300 Cucumis sativus L. HOM05D003564 ORTHO05D005332 4.4e-50 201.1 106 87.7
Gohir.A01G035000 Gossypium hirsutum HOM05D003564 ORTHO05D005332 5.8e-50 200.7 106 89.6
Lsat_1_v5_gn_6_116000 Lactuca sativa HOM05D003564 ORTHO05D005332 5.8e-50 200.7 106 88.7
Phvul.003G116700 Phaseolus vulgaris HOM05D003564 ORTHO05D005332 5.8e-50 200.7 106 89.6
PGR031G2439 Punica granatum HOM05D003564 ORTHO05D005332 5.8e-50 200.7 106 87.7
arahy.Tifrunner.gnm1.ann1.5PE0GF Arachis hypogaea HOM05D003564 ORTHO05D005332 7.5e-50 200.3 107 87.9
arahy.Tifrunner.gnm1.ann1.W3XDQ4 Arachis hypogaea HOM05D003564 ORTHO05D005332 7.5e-50 200.3 107 87.9
Medtr4g122670 Medicago truncatula HOM05D003564 ORTHO05D005332 7.5e-50 200.3 106 88.7
Aqoxy2G02668 Aquilegia oxysepala HOM05D003564 ORTHO05D005332 1.3e-49 199.5 107 86.0
Eucgr.H04065 Eucalyptus grandis HOM05D003564 ORTHO05D005332 1.3e-49 199.5 107 86.9
Sabra10G0114300 Salix brachista HOM05D003564 ORTHO05D005332 1.3e-49 199.5 106 88.7
TWI73G0893 Tripterygium wilfordii HOM05D003564 ORTHO05D005332 1.3e-49 199.5 106 87.7
CSS0022249 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D005332 1.7e-49 199.1 107 87.9
Haze_01331 Corylus avellana HOM05D003564 ORTHO05D005332 1.7e-49 199.1 106 87.7
Haze_01336 Corylus avellana HOM05D003564 ORTHO05D005332 1.7e-49 199.1 106 87.7
Sabra08G0077700 Salix brachista HOM05D003564 ORTHO05D005332 1.7e-49 199.1 106 87.7
Sed0008581 Sechium edule HOM05D003564 ORTHO05D005332 1.7e-49 199.1 106 85.8
Gorai.002G030900 Gossypium raimondii HOM05D003564 ORTHO05D005332 2.2e-49 198.7 106 87.7
Os03g0832600 Oryza sativa ssp. japonica HOM05D003564 ORTHO05D005332 2.2e-49 198.7 107 86.9
Atru.BG.89.p Acer truncatum HOM05D003564 ORTHO05D005332 2.9e-49 198.4 102 91.2
CiPaw.02G073000 Carya illinoinensis HOM05D003564 ORTHO05D005332 2.9e-49 198.4 106 86.8
MELO3C006726.2 Cucumis melo HOM05D003564 ORTHO05D005332 2.9e-49 198.4 105 86.7
Oeu027343.1 Olea europaea HOM05D003564 ORTHO05D005332 2.9e-49 198.4 107 86.0
Cfa015286 Carpinus fangiana HOM05D003564 ORTHO05D005332 3.7e-49 198.0 106 87.7
FvH4_4g20200 Fragaria vesca HOM05D003564 ORTHO05D005332 4.9e-49 197.6 106 86.8
FAN12G0614 Fragaria x ananassa HOM05D003564 ORTHO05D005332 4.9e-49 197.6 106 86.8
Gohir.D01G023559 Gossypium hirsutum HOM05D003564 ORTHO05D005332 4.9e-49 197.6 106 87.7
HanXRQChr05g0146131 Helianthus annuus HOM05D003564 ORTHO05D005332 4.9e-49 197.6 106 86.8
Zm00001eb063430 Zea mays HOM05D003564 ORTHO05D005332 4.9e-49 197.6 106 86.8
ATR0693G053 Amborella trichopoda HOM05D003564 ORTHO05D005332 8.3e-49 196.8 106 86.8
Psat4g021800 Pisum sativum HOM05D003564 ORTHO05D005332 8.3e-49 196.8 106 86.8
TPR.G25421 Trifolium pratense HOM05D003564 ORTHO05D005332 8.3e-49 196.8 106 87.7
unitig_22.g6346 Utricularia gibba HOM05D003564 ORTHO05D005332 1.1e-48 196.4 107 85.0
FAN07G2223 Fragaria x ananassa HOM05D003564 ORTHO05D005332 1.4e-48 196.1 106 85.8
RcHm_v2.0_Chr4g0425841 Rosa chinensis HOM05D003564 ORTHO05D005332 1.9e-48 195.7 106 85.8
unitig_8.g3092 Utricularia gibba HOM05D001060 ORTHO05D000905 1.9e-48 195.7 104 86.5
CiPaw.01G136200 Carya illinoinensis HOM05D003564 ORTHO05D005332 2.4e-48 195.3 106 84.9
Ciclev10004814m.g Citrus clementina HOM05D003564 ORTHO05D005332 2.4e-48 195.3 106 87.7
AUR62016236 Chenopodium quinoa HOM05D003564 ORTHO05D005332 3.2e-48 194.9 107 86.9
AUR62039254 Chenopodium quinoa HOM05D003564 ORTHO05D005332 3.2e-48 194.9 107 86.9
QL06p012801 Quercus lobata HOM05D003564 ORTHO05D005332 3.2e-48 194.9 105 86.7
CANSAT78G0776 Cannabis sativa HOM05D003564 ORTHO05D005332 4.1e-48 194.5 107 85.0
Prupe.1G114000 Prunus persica HOM05D003564 ORTHO05D005332 4.1e-48 194.5 106 84.0
HPP92_001226 Vanilla planifolia HOM05D003564 ORTHO05D005332 4.1e-48 194.5 106 84.9
Sc13g0007180 Simmondsia chinensis HOM05D003564 ORTHO05D005332 5.4e-48 194.1 107 85.0
Aqoxy6G00955 Aquilegia oxysepala HOM05D003564 ORTHO05D005332 9.2e-48 193.4 107 84.1
SEGI_35047 Sequoiadendron giganteum HOM05D003564 ORTHO05D005332 1.2e-47 193.0 107 84.1
Ah.07g201490 Amaranthus hybridus HOM05D003564 ORTHO05D005332 2.7e-47 191.8 107 83.2
DCAR_026993 Daucus carota HOM05D003564 ORTHO05D005332 2.7e-47 191.8 126 76.2
CANSAT80G1613 Cannabis sativa HOM05D003564 ORTHO05D005332 3.5e-47 191.4 107 84.1
Hund03137 Selenicereus undatus HOM05D003564 ORTHO05D005332 3.5e-47 191.4 107 83.2
Lj6g0012179 Lotus japonicus HOM05D003564 ORTHO05D005332 4.6e-47 191.0 106 84.0
EL10Ac3g05000 Beta vulgaris HOM05D003564 ORTHO05D005332 7.8e-47 190.3 107 83.2
ECA246G5316 Erigeron canadensis HOM05D003564 ORTHO05D005332 3.9e-46 188.0 98 87.8
CDE01G0090 Ceratophyllum demersum HOM05D003564 ORTHO05D005332 6.6e-46 187.2 106 81.1
Thecc.04G304400 Theobroma cacao HOM05D003564 ORTHO05D005332 1.9e-45 185.7 104 86.5
Hund11987 Selenicereus undatus HOM05D003564 ORTHO05D005332 3.3e-45 184.9 107 81.3
PSO210G4867 Papaver somniferum HOM05D003564 ORTHO05D005332 5.6e-45 184.1 107 80.4
Glyma.08G358832 Glycine max HOM05D003564 ORTHO05D028498 2.1e-44 182.2 107 79.4
Aa31LG2G16960 Aethionema arabicum HOM05D003564 ORTHO05D005332 6.2e-44 180.6 106 80.2
Aa31LG5G17120 Aethionema arabicum HOM05D003564 ORTHO05D005332 1.1e-43 179.9 106 80.2
CARHR081120 Cardamine hirsuta HOM05D003564 ORTHO05D005332 4.0e-43 177.9 106 77.4
AL3G17620 Arabidopsis lyrata HOM05D003564 ORTHO05D005332 5.2e-43 177.6 106 76.4
THA.LOC104818876 Tarenaya hassleriana HOM05D003564 ORTHO05D005332 5.2e-43 177.6 106 76.4
C05p60630 Brassica napus HOM05D003564 ORTHO05D001609 6.8e-43 177.2 106 78.3
BolC5t34726H Brassica oleracea HOM05D003564 ORTHO05D005332 6.8e-43 177.2 106 78.3
Thhalv10020583m.g Eutrema salsugineum HOM05D003564 ORTHO05D005332 6.8e-43 177.2 106 75.5
AT3G06580 Arabidopsis thaliana HOM05D003564 ORTHO05D005332 1.5e-42 176.0 106 76.4
A05p41470 Brassica napus HOM05D003564 ORTHO05D005332 1.5e-42 176.0 102 80.4
BraA05t22867Z Brassica rapa HOM05D003564 ORTHO05D005332 1.5e-42 176.0 102 80.4
BNapus_Darmor_BZH_scaffold_118p00030 Brassica napus HOM05D003564 ORTHO05D001609 3.4e-42 174.9 106 76.4
BraA01t04431Z Brassica rapa HOM05D003564 ORTHO05D005332 3.4e-42 174.9 106 76.4
A03p34740 Brassica napus HOM05D003564 ORTHO05D005332 4.4e-42 174.5 106 78.3
BraA03t12654Z Brassica rapa HOM05D003564 ORTHO05D005332 4.4e-42 174.5 106 78.3
Carub.0003s0604 Capsella rubella HOM05D003564 ORTHO05D005332 4.4e-42 174.5 106 76.4
Sp3g05510 Schrenkiella parvula HOM05D003564 ORTHO05D005332 4.4e-42 174.5 106 76.4
BolC1t05602H Brassica oleracea HOM05D003564 ORTHO05D005332 1.3e-41 172.9 106 76.4
Lj3A833G36 Lonicera japonica HOM05D003564 ORTHO05D005332 4.9e-41 171.0 107 72.9
SMO340G0013 Selaginella moellendorffii HOM05D003564 ORTHO05D005332 1.4e-40 169.5 103 76.7
BolC3t16502H Brassica oleracea HOM05D003564 ORTHO05D005332 5.4e-40 167.5 106 76.4
TAR362G0511 Trochodendron aralioides HOM05D003564 ORTHO05D005332 1.2e-39 166.4 85 88.2
TAR365G0172 Trochodendron aralioides HOM05D003564 ORTHO05D028498 1.7e-38 162.5 120 68.3
Aqoxy2G02665 Aquilegia oxysepala HOM05D000882 ORTHO05D001142 2.3e-38 162.2 106 73.6
Pp3c9_18770 Physcomitrium patens HOM05D003564 ORTHO05D005332 7.3e-37 157.1 107 67.3
AagrBONN_evm.TU.Sc2ySwM_117.3800 Anthoceros agrestis HOM05D003564 ORTHO05D005332 1.4e-35 152.9 107 68.2
Mapoly0068s0036 Marchantia polymorpha HOM05D003564 ORTHO05D005332 1.4e-35 152.9 106 69.8
Mapoly0046s0013 Marchantia polymorpha HOM05D003564 ORTHO05D005332 3.1e-35 151.8 106 68.9
Pp3c19_13990 Physcomitrium patens HOM05D003564 ORTHO05D005332 1.2e-34 149.8 107 64.5
Dinv44265 Davidia involucrata HOM05D003564 ORTHO05D005332 7.1e-32 140.6 73 86.3
CBR_g24145 Chara braunii HOM05D003564 ORTHO05D005332 2.7e-31 138.7 107 60.7
CANSAT21G1208 Cannabis sativa HOM05D003564 ORTHO05D005332 5.1e-30 134.4 73 83.6
MBI19_g03266_MAGBIO Magnolia biondii HOM05D003564 ORTHO05D005332 9.6e-29 130.2 83 74.7
Actinidia14250 Actinidia chinensis HOM05D003564 ORTHO05D004310 2.4e-27 125.6 70 80.0
MCO14G377 Micromonas commoda HOM05D003564 ORTHO05D005332 3.1e-27 125.2 104 55.8
PRCOL_00002578 Prasinoderma coloniale HOM05D003564 ORTHO05D005332 1.1e-24 116.7 101 53.5
Cre17.g732300 Chlamydomonas reinhardtii HOM05D003564 ORTHO05D005332 1.4e-24 116.3 103 49.5
Phvul.010G104600 Phaseolus vulgaris HOM05D003564 ORTHO05D015539 1.2e-18 96.7 110 50.9
Nitab4.5_0000647g0260 Nicotiana tabacum HOM05D003564 ORTHO05D005332 3.8e-17 91.7 107 51.4
Cfa026431 Carpinus fangiana HOM05D003564 ORTHO05D005332 7.4e-13 77.4 99 36.4
Haze_26210 Corylus avellana HOM05D003564 ORTHO05D005332 1.8e-11 72.8 58 56.9
Cpa.g.sc9.29 Carica papaya HOM05D003564 ORTHO05D005332 4.5e-10 68.2 38 84.2
CAN.G33.6 Capsicum annuum HOM05D005327 ORTHO05D006655 2.3e-06 55.8 75 38.7


User provided reference genes

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