Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g00570 Coffea canephora HOM05D008159 ORTHO05D009498 3.6e-45 184.5 89 100.0
Thecc.04G305200 Theobroma cacao HOM05D008159 ORTHO05D009498 1.2e-19 99.8 89 59.6
Duzib052G0731 Durio zibethinus HOM05D008159 ORTHO05D009498 2.2e-18 95.5 89 55.1
Manes.15G002400 Manihot esculenta HOM05D008159 ORTHO05D009498 2.8e-18 95.1 77 62.3
FvH4_4g20450 Fragaria vesca HOM05D008159 ORTHO05D009498 9.1e-17 90.1 82 57.3
FAN12G1128 Fragaria x ananassa HOM05D008159 ORTHO05D009498 9.1e-17 90.1 82 57.3
RcHm_v2.0_Chr4g0425921 Rosa chinensis HOM05D008159 ORTHO05D009498 2.0e-16 89.0 82 56.1
Prupe.1G113600 Prunus persica HOM05D008159 ORTHO05D009498 5.9e-16 87.4 68 61.8
FAN07G1405 Fragaria x ananassa HOM05D008159 ORTHO05D009498 1.0e-15 86.7 82 54.9
MD16G1149900 Malus domestica HOM05D008159 ORTHO05D009498 1.0e-15 86.7 94 53.2
vmacro07951 Vaccinium macrocarpon HOM05D008159 ORTHO05D009498 1.0e-15 86.7 96 52.1
MD13G1149600 Malus domestica HOM05D008159 ORTHO05D009498 1.7e-15 85.9 94 55.3
CiPaw.01G135400 Carya illinoinensis HOM05D008159 ORTHO05D009498 2.9e-15 85.1 90 54.4
Ciclev10006357m.g Citrus clementina HOM05D008159 ORTHO05D009498 2.9e-15 85.1 77 59.7
Potri.010G148300 Populus trichocarpa HOM05D008159 ORTHO05D009498 3.8e-15 84.7 77 55.8
Rhsim04G0241600 Rhododendron simsii HOM05D008159 ORTHO05D009498 1.1e-14 83.2 93 49.5
Glyma.15G138300 Glycine max HOM05D008159 ORTHO05D009498 1.9e-14 82.4 77 50.6
Eucgr.H03298 Eucalyptus grandis HOM05D008159 ORTHO05D009498 2.1e-13 79.0 94 47.9
Potri.008G102400 Populus trichocarpa HOM05D008159 ORTHO05D009498 2.1e-13 79.0 64 65.6
Gorai.006G080300 Gossypium raimondii HOM05D008159 ORTHO05D009498 2.8e-13 78.6 85 45.9
Haze_01341 Corylus avellana HOM05D008159 ORTHO05D009498 4.7e-13 77.8 61 57.4
Haze_01342 Corylus avellana HOM05D008159 ORTHO05D009498 4.7e-13 77.8 61 57.4
CSS0042580 Camellia sinensis var. sinensis HOM05D000949 ORTHO05D009565 1.4e-12 76.3 61 59.0
TAR365G1059 Trochodendron aralioides HOM05D001895 ORTHO05D002082 2.3e-12 75.5 84 51.2
Gohir.D09G065600 Gossypium hirsutum HOM05D008159 ORTHO05D009498 8.9e-12 73.6 85 44.7
Cc02_g35240 Coffea canephora HOM05D008159 ORTHO05D009498 1.2e-11 73.2 95 43.2
Eucgr.B03969 Eucalyptus grandis HOM05D008159 ORTHO05D009498 1.2e-11 73.2 81 49.4
Lj6g0007339 Lotus japonicus HOM05D008159 ORTHO05D009498 3.4e-11 71.6 83 48.2
Lalb_Chr21g0310201 Lupinus albus HOM05D008159 ORTHO05D009498 3.4e-11 71.6 81 48.1
Manes.09G177901 Manihot esculenta HOM05D008159 ORTHO05D009498 3.4e-11 71.6 99 44.4
Oeu053734.1 Olea europaea HOM05D008159 ORTHO05D009498 4.4e-11 71.2 105 41.0
PGSC0003DMG402002794 Solanum tuberosum HOM05D008159 ORTHO05D009498 5.7e-11 70.9 96 43.8
Atru.chr4.3059 Acer truncatum HOM05D008159 ORTHO05D009498 9.8e-11 70.1 84 48.8
DCAR_005440 Daucus carota HOM05D008159 ORTHO05D009498 9.8e-11 70.1 81 46.9
Lalb_Chr06g0167441 Lupinus albus HOM05D008159 ORTHO05D009498 9.8e-11 70.1 81 50.6
EL10Ac3g05544 Beta vulgaris HOM05D008159 ORTHO05D009498 2.8e-10 68.6 86 43.0
THA.LOC109116907 Tarenaya hassleriana HOM05D008159 ORTHO05D009498 3.7e-10 68.2 81 45.7
Lalb_Chr20g0120721 Lupinus albus HOM05D008159 ORTHO05D009498 1.4e-09 66.2 76 46.1
Eucgr.H04070 Eucalyptus grandis HOM05D008159 ORTHO05D009498 1.8e-09 65.9 82 51.2
Migut.G00043 Erythranthe guttata HOM05D065555 ORTHO05D009498 5.4e-09 64.3 82 47.6
CARHR186770 Cardamine hirsuta HOM05D009594 ORTHO05D009498 9.2e-09 63.5 77 44.2
Migut.B00941 Erythranthe guttata HOM05D008159 ORTHO05D009498 1.2e-08 63.2 91 44.0
TAR636G1322 Trochodendron aralioides HOM05D008159 ORTHO05D009498 2.0e-08 62.4 67 49.3
TAR636G3676 Trochodendron aralioides HOM05D008159 ORTHO05D009498 2.0e-08 62.4 62 53.2
A06p38300 Brassica napus HOM05D008159 ORTHO05D009498 2.7e-08 62.0 82 41.5
C07p39940 Brassica napus HOM05D008159 ORTHO05D009498 2.7e-08 62.0 82 41.5
BolC7t44526H Brassica oleracea HOM05D008159 ORTHO05D009498 2.7e-08 62.0 82 41.5
BraA06t26745Z Brassica rapa HOM05D008159 ORTHO05D009498 2.7e-08 62.0 82 41.5
CARHR287950 Cardamine hirsuta HOM05D008159 ORTHO05D009498 2.7e-08 62.0 82 40.2
Potri.005G011400 Populus trichocarpa HOM05D009594 ORTHO05D009498 3.5e-08 61.6 86 40.7
Sed0007216 Sechium edule HOM05D008159 ORTHO05D009498 3.5e-08 61.6 77 42.9
Migut.N00944 Erythranthe guttata HOM05D008159 ORTHO05D009498 4.5e-08 61.2 88 42.0
Sp2g19830 Schrenkiella parvula HOM05D008159 ORTHO05D009498 4.5e-08 61.2 82 39.0
SpUn0021_0020 Schrenkiella parvula HOM05D008159 ORTHO05D009498 4.5e-08 61.2 82 39.0
Phvul.007G202400 Phaseolus vulgaris HOM05D008159 ORTHO05D009498 5.9e-08 60.8 56 58.9
CiPaw.07G030900 Carya illinoinensis HOM05D008159 ORTHO05D009498 1.3e-07 59.7 90 46.7
Thhalv10005580m.g Eutrema salsugineum HOM05D008159 ORTHO05D009498 1.7e-07 59.3 82 37.8
Glyma.20G095900 Glycine max HOM05D009594 ORTHO05D009498 1.7e-07 59.3 77 48.1
Gohir.A10G174300 Gossypium hirsutum HOM05D008159 ORTHO05D009498 2.9e-07 58.5 35 74.3
Gohir.D10G180800 Gossypium hirsutum HOM05D008159 ORTHO05D009498 2.9e-07 58.5 35 74.3
Medtr2g033600 Medicago truncatula HOM05D008159 ORTHO05D009498 6.6e-07 57.4 84 36.9
THA.LOC109117014 Tarenaya hassleriana HOM05D009594 ORTHO05D009498 6.6e-07 57.4 80 41.2
Cfa006721 Carpinus fangiana HOM05D008159 ORTHO05D009498 8.6e-07 57.0 84 40.5
Gohir.A11G274300 Gossypium hirsutum HOM05D008159 ORTHO05D009498 1.9e-06 55.8 36 69.4
Carub.0008s0940 Capsella rubella HOM05D008159 ORTHO05D009498 2.5e-06 55.5 62 41.9
Phvul.006G119900 Phaseolus vulgaris HOM05D000949 ORTHO05D009565 2.5e-06 55.5 78 39.7
AT5G26790 Arabidopsis thaliana HOM05D009594 ORTHO05D009498 4.3e-06 54.7 75 45.3
Cpa.g.sc48.176 Carica papaya HOM05D009594 ORTHO05D009498 4.3e-06 54.7 83 41.0
Duzib177G0425 Durio zibethinus HOM05D009594 ORTHO05D009498 5.6e-06 54.3 68 47.1
Glyma.09G033500 Glycine max HOM05D008159 ORTHO05D009498 7.3e-06 53.9 81 37.0
Gohir.D11G284500 Gossypium hirsutum HOM05D008159 ORTHO05D009498 7.3e-06 53.9 68 47.1
Gorai.007G307600 Gossypium raimondii HOM05D008159 ORTHO05D009498 7.3e-06 53.9 68 47.1


User provided reference genes

Program Settings