Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 6.1e-35 150.2 73 100.0
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 3.8e-21 104.4 65 84.6
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 6.6e-21 103.6 64 75.0
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 1.6e-19 99.0 69 72.5
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.6e-19 99.0 70 74.3
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 2.1e-19 98.6 65 76.9
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 2.8e-19 98.2 68 72.1
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 4.7e-19 97.4 66 72.7
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 8.0e-19 96.7 65 72.3
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 8.0e-19 96.7 68 76.5
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 8.0e-19 96.7 68 73.5
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 1.0e-18 96.3 66 68.2
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 1.0e-18 96.3 67 71.6
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 1.8e-18 95.5 66 71.2
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 2.3e-18 95.1 71 69.0
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 2.3e-18 95.1 63 76.2
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 2.3e-18 95.1 71 69.0
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 3.0e-18 94.7 71 69.0
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 3.0e-18 94.7 65 72.3
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 3.0e-18 94.7 71 69.0
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 4.0e-18 94.4 66 75.8
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 4.0e-18 94.4 66 75.8
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 4.0e-18 94.4 66 75.8
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 4.0e-18 94.4 65 80.0
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 5.2e-18 94.0 65 72.3
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 8.9e-18 93.2 65 75.4
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 8.9e-18 93.2 71 64.8
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 8.9e-18 93.2 66 69.7
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 8.9e-18 93.2 68 67.6
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 1.2e-17 92.8 68 67.6
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 2.0e-17 92.0 65 70.8
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 2.6e-17 91.7 68 73.5
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 2.6e-17 91.7 66 74.2
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 3.4e-17 91.3 66 72.7
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 3.4e-17 91.3 66 68.2
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 3.4e-17 91.3 70 70.0
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 4.4e-17 90.9 72 69.4
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 4.4e-17 90.9 68 67.6
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 5.7e-17 90.5 72 63.9
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 5.7e-17 90.5 66 72.7
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 7.5e-17 90.1 66 71.2
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 7.5e-17 90.1 66 69.7
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 7.5e-17 90.1 73 65.8
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 9.8e-17 89.7 72 70.8
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 9.8e-17 89.7 71 69.0
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 1.3e-16 89.4 66 65.2
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 1.3e-16 89.4 66 72.7
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 1.7e-16 89.0 68 69.1
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 1.7e-16 89.0 65 72.3
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 3.7e-16 87.8 68 67.6
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 3.7e-16 87.8 65 72.3
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 4.9e-16 87.4 67 67.2
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 4.9e-16 87.4 70 64.3
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 4.9e-16 87.4 66 69.7
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 4.9e-16 87.4 71 62.0
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 8.3e-16 86.7 68 67.6
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 1.1e-15 86.3 66 66.7
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 1.4e-15 85.9 67 64.2
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 1.4e-15 85.9 66 60.6
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 1.8e-15 85.5 67 64.2
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 1.8e-15 85.5 65 66.2
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 1.8e-15 85.5 66 62.1
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 1.8e-15 85.5 67 70.1
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 2.4e-15 85.1 70 64.3
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 3.2e-15 84.7 69 63.8
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 3.2e-15 84.7 69 63.8
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 3.2e-15 84.7 69 63.8
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 4.1e-15 84.3 69 60.9
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 5.4e-15 84.0 83 57.8
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 5.4e-15 84.0 79 60.8
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 5.4e-15 84.0 83 56.6
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 5.4e-15 84.0 69 63.8
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 1.2e-14 82.8 66 66.7
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 1.6e-14 82.4 73 60.3
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 1.6e-14 82.4 65 69.2
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 1.6e-14 82.4 69 60.9
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 2.7e-14 81.6 75 60.0
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 3.5e-14 81.3 75 58.7
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 3.5e-14 81.3 75 60.0
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 3.5e-14 81.3 75 60.0
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 3.5e-14 81.3 75 60.0
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 3.5e-14 81.3 75 60.0
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 3.5e-14 81.3 78 59.0
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 3.5e-14 81.3 69 68.1
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 4.6e-14 80.9 75 60.0
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 4.6e-14 80.9 78 59.0
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 4.6e-14 80.9 75 58.7
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 4.6e-14 80.9 75 58.7
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 4.6e-14 80.9 75 58.7
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 4.6e-14 80.9 69 62.3
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 5.9e-14 80.5 78 56.4
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 7.8e-14 80.1 71 59.2
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 7.8e-14 80.1 71 59.2
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 7.8e-14 80.1 78 59.0
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 7.8e-14 80.1 65 61.5
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 1.0e-13 79.7 75 57.3
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 1.0e-13 79.7 75 57.3
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 1.0e-13 79.7 75 57.3
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 1.0e-13 79.7 75 57.3
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 1.0e-13 79.7 75 57.3
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 1.0e-13 79.7 75 57.3
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 1.3e-13 79.3 81 56.8
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 1.3e-13 79.3 81 56.8
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 1.3e-13 79.3 75 58.7
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 1.7e-13 79.0 68 67.6
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 2.3e-13 78.6 80 56.2
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 2.9e-13 78.2 74 58.1
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 2.9e-13 78.2 81 55.6
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 2.9e-13 78.2 74 58.1
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 2.9e-13 78.2 81 55.6
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 3.9e-13 77.8 75 56.0
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 3.9e-13 77.8 81 55.6
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 6.6e-13 77.0 81 55.6
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 6.6e-13 77.0 79 58.2
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 6.6e-13 77.0 81 55.6
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 6.6e-13 77.0 81 55.6
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 6.6e-13 77.0 79 58.2
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 6.6e-13 77.0 81 55.6
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 8.6e-13 76.6 78 53.8
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 8.6e-13 76.6 70 61.4
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 8.6e-13 76.6 65 66.2
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 8.6e-13 76.6 81 55.6
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 1.1e-12 76.3 81 54.3
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 1.1e-12 76.3 80 55.0
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 1.1e-12 76.3 80 55.0
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 1.1e-12 76.3 71 63.4
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 1.1e-12 76.3 69 55.1
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 1.5e-12 75.9 82 52.4
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 1.5e-12 75.9 81 55.6
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 2.5e-12 75.1 69 63.8
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 2.5e-12 75.1 78 55.1
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 3.3e-12 74.7 74 56.8
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 3.3e-12 74.7 69 62.3
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 3.3e-12 74.7 65 60.0
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 4.3e-12 74.3 82 53.7
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 4.3e-12 74.3 65 58.5
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 1.2e-11 72.8 66 56.1
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 4.7e-11 70.9 66 63.6
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 1.0e-10 69.7 75 52.0
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 3.1e-10 68.2 64 56.2
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 4.0e-10 67.8 66 54.5
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 1.2e-09 66.2 77 49.4
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 1.2e-09 66.2 82 48.8
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 1.5e-09 65.9 57 63.2
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 1.7e-08 62.4 75 49.3
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 8.3e-08 60.1 76 47.4
Os01g0288200 Oryza sativa ssp. japonica HOM05D004817 ORTHO05D005790 3.2e-07 58.2 74 48.6
ATR0796G174 Amborella trichopoda HOM05D004817 ORTHO05D005790 9.2e-07 56.6 61 54.1
TAR365G0774 Trochodendron aralioides HOM05D004817 ORTHO05D005790 2.0e-06 55.5 79 46.8


User provided reference genes

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