Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g39840 Coffea canephora HOM05D005894 ORTHO05D007461 1.7e-210 735.7 355 100.0
Peaxi162Scf00767g00044 Petunia axillaris HOM05D005894 ORTHO05D007461 2.2e-106 389.8 333 57.7
Actinidia20275 Actinidia chinensis HOM05D005894 ORTHO05D007461 9.4e-105 384.4 328 60.4
Nitab4.5_0000307g0270 Nicotiana tabacum HOM05D005894 ORTHO05D007461 2.7e-104 382.9 336 58.6
PGSC0003DMG400018381 Solanum tuberosum HOM05D005894 ORTHO05D007461 3.9e-103 379.0 322 59.9
Hma1.2p1_0309F.1_g120580 Hydrangea macrophylla HOM05D005894 ORTHO05D007461 5.1e-103 378.6 307 62.2
Solyc01g096380.1 Solanum lycopersicum HOM05D005894 ORTHO05D007461 3.3e-102 375.9 331 58.9
Sopen00g010520 Solanum pennellii HOM05D005894 ORTHO05D007461 9.7e-102 374.4 332 59.0
Nn3g18834 Nelumbo nucifera HOM05D005894 ORTHO05D007461 1.3e-101 374.0 335 59.7
vmacro04295 Vaccinium macrocarpon HOM05D005894 ORTHO05D007461 1.7e-101 373.6 311 61.1
CAN.G1045.39 Capsicum annuum HOM05D005894 ORTHO05D007461 6.3e-101 371.7 340 55.9
TAR375G0623 Trochodendron aralioides HOM05D005894 ORTHO05D007461 1.4e-100 370.5 325 59.4
HanXRQChr17g0563091 Helianthus annuus HOM05D005894 ORTHO05D007461 4.1e-100 369.0 314 58.6
ECA234G4535 Erigeron canadensis HOM05D005894 ORTHO05D007461 9.1e-100 367.9 312 59.9
Oeu042964.1 Olea europaea HOM05D005894 ORTHO05D007461 4.5e-99 365.5 302 60.9
Rhsim07G0001000 Rhododendron simsii HOM05D005894 ORTHO05D007461 7.7e-99 364.8 313 59.4
Haze_15713 Corylus avellana HOM05D005894 ORTHO05D007461 1.0e-98 364.4 331 57.1
Cfa003752 Carpinus fangiana HOM05D005894 ORTHO05D007461 2.9e-98 362.8 331 57.4
MSTRG.20917 Avicennia marina HOM05D005894 ORTHO05D007461 3.8e-98 362.5 337 56.4
Haze_15704 Corylus avellana HOM05D005894 ORTHO05D007461 1.4e-97 360.5 331 56.8
Lsat_1_v5_gn_4_31980 Lactuca sativa HOM05D005894 ORTHO05D007461 1.4e-97 360.5 304 59.9
TWI14G1398 Tripterygium wilfordii HOM05D005894 ORTHO05D007461 1.9e-97 360.1 331 56.5
ClCG06G002760 Citrullus lanatus HOM05D005894 ORTHO05D007461 5.5e-97 358.6 323 58.2
FAN10G2153 Fragaria x ananassa HOM05D005894 ORTHO05D007461 9.4e-97 357.8 311 59.5
CiPaw.01G080700 Carya illinoinensis HOM05D005894 ORTHO05D007461 2.7e-96 356.3 334 57.5
Potri.002G177500 Populus trichocarpa HOM05D005894 ORTHO05D007461 7.9e-96 354.8 326 58.0
Lsat_1_v5_gn_4_31960 Lactuca sativa HOM05D005894 ORTHO05D007461 1.4e-95 354.0 305 59.3
MBI04_g25320_MAGBIO Magnolia biondii HOM05D005894 ORTHO05D007461 1.5e-94 350.5 323 55.4
FAN03G0327 Fragaria x ananassa HOM05D005894 ORTHO05D007461 2.0e-94 350.1 310 60.0
HanXRQChr16g0524851 Helianthus annuus HOM05D005894 ORTHO05D007461 3.3e-94 349.4 295 61.0
FAN06G1719 Fragaria x ananassa HOM05D005894 ORTHO05D007461 7.4e-94 348.2 310 60.0
Sabra02G0136100 Salix brachista HOM05D005894 ORTHO05D007461 9.7e-94 347.8 323 57.6
FAN10G4192 Fragaria x ananassa HOM05D005894 ORTHO05D007461 1.3e-93 347.4 310 59.7
Manes.01G241500 Manihot esculenta HOM05D005894 ORTHO05D007461 2.8e-93 346.3 331 55.9
QL08p046715 Quercus lobata HOM05D005894 ORTHO05D007461 1.1e-92 344.4 333 55.0
PSO063G1123 Papaver somniferum HOM05D005894 ORTHO05D007461 1.8e-92 343.6 345 53.0
Sed0016091 Sechium edule HOM05D005894 ORTHO05D007461 2.4e-92 343.2 320 56.6
VMungo0331G1846 Vigna mungo HOM05D005894 ORTHO05D007461 3.1e-92 342.8 315 54.6
Glyma.07G051400 Glycine max HOM05D005894 ORTHO05D007461 4.1e-92 342.4 324 55.6
Atru.chr5.746 Acer truncatum HOM05D005894 ORTHO05D007461 7.0e-92 341.7 306 56.9
Thecc.01G335500 Theobroma cacao HOM05D005894 ORTHO05D007461 9.1e-92 341.3 336 55.7
Ciclev10023878m.g Citrus clementina HOM05D005894 ORTHO05D007461 3.5e-91 339.3 323 56.0
AUR62004546 Chenopodium quinoa HOM05D005894 ORTHO05D007461 4.5e-91 339.0 336 52.7
AL1G11320 Arabidopsis lyrata HOM05D005894 ORTHO05D007461 5.9e-91 338.6 311 54.0
Gohir.A07G134700 Gossypium hirsutum HOM05D005894 ORTHO05D007461 5.9e-91 338.6 320 55.3
MD07G1156900 Malus domestica HOM05D005894 ORTHO05D007461 5.9e-91 338.6 325 54.5
THA.LOC104801356 Tarenaya hassleriana HOM05D005894 ORTHO05D007461 1.3e-90 337.4 322 56.5
COL.COLO4_06220 Corchorus olitorius HOM05D005894 ORTHO05D007461 1.7e-90 337.0 337 54.6
Lalb_Chr17g0342931 Lupinus albus HOM05D005894 ORTHO05D007461 2.2e-90 336.7 321 54.8
Gorai.001G151400 Gossypium raimondii HOM05D005894 ORTHO05D007461 3.8e-90 335.9 320 55.3
CARHR001290 Cardamine hirsuta HOM05D005894 ORTHO05D007461 5.0e-90 335.5 301 55.8
Cpa.g.sc141.18 Carica papaya HOM05D005894 ORTHO05D007461 8.5e-90 334.7 342 51.5
Ah.05g179110 Amaranthus hybridus HOM05D005894 ORTHO05D007461 1.1e-89 334.3 331 53.2
Duzib133G0870 Durio zibethinus HOM05D005894 ORTHO05D007461 1.5e-89 334.0 334 53.6
QL08p046701 Quercus lobata HOM05D005894 ORTHO05D007461 1.5e-89 334.0 314 58.9
Sed0008841 Sechium edule HOM05D005894 ORTHO05D007461 2.5e-89 333.2 305 55.4
AT1G01180 Arabidopsis thaliana HOM05D005894 ORTHO05D007461 3.2e-89 332.8 301 55.8
A10p00720 Brassica napus HOM05D005894 ORTHO05D007461 3.2e-89 332.8 331 53.2
BraA10t42349Z Brassica rapa HOM05D005894 ORTHO05D007461 3.2e-89 332.8 331 53.5
Phvul.010G118000 Phaseolus vulgaris HOM05D005894 ORTHO05D007461 3.2e-89 332.8 316 54.1
MSTRG.20916 Avicennia marina HOM05D005894 ORTHO05D007461 4.2e-89 332.4 325 54.2
Prupe.2G195400 Prunus persica HOM05D005894 ORTHO05D007461 4.2e-89 332.4 310 55.8
Sc01g0002310 Simmondsia chinensis HOM05D005894 ORTHO05D007461 4.2e-89 332.4 321 54.2
Psat4g216640 Pisum sativum HOM05D005894 ORTHO05D007461 1.2e-88 330.9 318 54.7
Duzib138G0081 Durio zibethinus HOM05D005894 ORTHO05D007461 2.7e-88 329.7 335 53.1
arahy.Tifrunner.gnm1.ann1.IJN1JI Arachis hypogaea HOM05D005894 ORTHO05D007461 3.6e-88 329.3 344 50.9
MELO3C022251.2 Cucumis melo HOM05D005894 ORTHO05D007461 3.6e-88 329.3 249 64.3
arahy.Tifrunner.gnm1.ann1.UMNZ42 Arachis hypogaea HOM05D005894 ORTHO05D007461 4.7e-88 328.9 316 53.8
arahy.Tifrunner.gnm1.ann1.YB3WUJ Arachis hypogaea HOM05D005894 ORTHO05D007461 4.7e-88 328.9 316 53.8
Thhalv10008287m.g Eutrema salsugineum HOM05D005894 ORTHO05D007461 4.7e-88 328.9 301 54.5
Sp1g01110 Schrenkiella parvula HOM05D005894 ORTHO05D007461 4.7e-88 328.9 301 54.5
Carub.0001s0103 Capsella rubella HOM05D005894 ORTHO05D007461 6.1e-88 328.6 335 51.0
BcaB03g13563 Brassica carinata HOM05D005894 ORTHO05D007461 8.0e-88 328.2 318 53.8
C05p00760 Brassica napus HOM05D005894 ORTHO05D007461 1.0e-87 327.8 318 53.5
Potri.014G103800 Populus trichocarpa HOM05D005894 ORTHO05D007461 1.0e-87 327.8 243 64.6
Dinv32633 Davidia involucrata HOM05D005894 ORTHO05D007461 1.4e-87 327.4 305 58.0
CsaV3_6G008930 Cucumis sativus L. HOM05D005894 ORTHO05D007461 2.3e-87 326.6 330 53.0
BolC5t28860H Brassica oleracea HOM05D005894 ORTHO05D007461 3.0e-87 326.2 318 53.5
Aa31LG1G10550 Aethionema arabicum HOM05D005894 ORTHO05D007461 6.7e-87 325.1 331 52.0
arahy.Tifrunner.gnm1.ann1.FN9JYV Arachis hypogaea HOM05D005894 ORTHO05D007461 8.8e-87 324.7 316 53.8
Lj3g0011008 Lotus japonicus HOM05D005894 ORTHO05D007461 2.6e-86 323.2 335 53.4
PSO782G1789 Papaver somniferum HOM05D005894 ORTHO05D007461 4.4e-86 322.4 336 52.1
Gohir.A12G115600 Gossypium hirsutum HOM05D005894 ORTHO05D007461 7.4e-86 321.6 337 52.2
Ca_23494_v3 Cicer arietinum L. HOM05D005894 ORTHO05D007461 9.7e-86 321.2 312 53.2
Ca_29944_v3 Cicer arietinum L. HOM05D005894 ORTHO05D007461 9.7e-86 321.2 312 53.2
Medtr8g024680 Medicago truncatula HOM05D005894 ORTHO05D007461 1.7e-85 320.5 307 54.1
Gohir.D12G119200 Gossypium hirsutum HOM05D005894 ORTHO05D007461 2.2e-85 320.1 331 52.3
ATR0090G035 Amborella trichopoda HOM05D005894 ORTHO05D007461 3.7e-85 319.3 301 54.2
Ah.07g207870 Amaranthus hybridus HOM05D005894 ORTHO05D007461 1.4e-84 317.4 325 51.4
MSTRG.26254 Avicennia marina HOM05D005894 ORTHO05D007461 2.4e-84 316.6 304 53.9
SGA_v2.0_scaffold5G03060 Striga asiatica HOM05D005894 ORTHO05D007461 3.1e-84 316.2 339 51.6
AUR62022660 Chenopodium quinoa HOM05D005894 ORTHO05D007461 4.1e-84 315.8 234 62.0
Migut.B01913 Erythranthe guttata HOM05D005894 ORTHO05D007461 9.1e-84 314.7 322 51.2
Lj9P603T40 Lonicera japonica HOM05D005894 ORTHO05D007461 3.8e-82 309.3 258 61.2
Sc01g0000420 Simmondsia chinensis HOM05D005894 ORTHO05D007461 5.5e-81 305.4 311 49.2
TPR.G14294 Trifolium pratense HOM05D005894 ORTHO05D007461 8.0e-80 301.6 312 49.7
MBI04_g22377_MAGBIO Magnolia biondii HOM05D005894 ORTHO05D007461 1.0e-79 301.2 300 54.0
Haze_15705 Corylus avellana HOM05D005894 ORTHO05D007461 1.4e-79 300.8 289 55.7
SEGI_06461 Sequoiadendron giganteum HOM05D005894 ORTHO05D007461 1.4e-79 300.8 326 50.3
Lj2g0016031 Lotus japonicus HOM05D005894 ORTHO05D007461 3.0e-79 299.7 310 52.9
Sc01g0002320 Simmondsia chinensis HOM05D005894 ORTHO05D007461 8.3e-77 291.6 309 48.2
SalBow6G4791 Salvia bowleyana HOM05D005894 ORTHO05D007461 2.4e-76 290.0 333 49.5
SalBow3G0292 Salvia bowleyana HOM05D005894 ORTHO05D007461 3.1e-76 289.7 220 61.4
SalBow3G4666 Salvia bowleyana HOM05D005894 ORTHO05D007461 3.1e-76 289.7 220 61.4
Pp3c23_20890 Physcomitrium patens HOM05D005894 ORTHO05D007461 2.2e-74 283.5 328 44.8
unitig_52.g17564 Utricularia gibba HOM05D005894 ORTHO05D007461 2.5e-73 280.0 246 56.5
Gorai.008G129200 Gossypium raimondii HOM05D005894 ORTHO05D007461 1.2e-72 277.7 331 48.6
Pp3c20_5150 Physcomitrium patens HOM05D005894 ORTHO05D007461 1.2e-72 277.7 240 52.1
Mapoly0044s0088 Marchantia polymorpha HOM05D005894 ORTHO05D007461 2.0e-70 270.4 234 55.1
TPR.G25260 Trifolium pratense HOM05D005894 ORTHO05D007461 2.2e-69 266.9 205 62.9
EL10Ac5g10561 Beta vulgaris HOM05D005894 ORTHO05D007461 4.1e-68 262.7 302 45.7
Gohir.D07G139300 Gossypium hirsutum HOM05D005894 ORTHO05D007461 7.0e-68 261.9 270 52.6
FAN01G2899 Fragaria x ananassa HOM05D005894 ORTHO05D007461 9.1e-68 261.5 222 59.0
Os09g0518900 Oryza sativa ssp. japonica HOM05D005894 ORTHO05D007461 9.1e-68 261.5 314 47.5
unitig_744.g24593 Utricularia gibba HOM05D005894 ORTHO05D007461 1.6e-67 260.8 310 47.7
AagrBONN_evm.TU.Sc2ySwM_228.2264 Anthoceros agrestis HOM05D005894 ORTHO05D007461 2.0e-67 260.4 248 50.8
unitig_744.g24591 Utricularia gibba HOM05D005894 ORTHO05D007461 5.0e-66 255.8 310 46.8
Zm00001eb102910 Zea mays HOM05D005894 ORTHO05D007461 5.0e-66 255.8 339 45.4
Zm00001eb102940 Zea mays HOM05D005894 ORTHO05D007461 5.0e-66 255.8 339 45.4
unitig_21.g20086 Utricularia gibba HOM05D005894 ORTHO05D007461 8.6e-66 255.0 247 53.4
unitig_744.g24581 Utricularia gibba HOM05D005894 ORTHO05D007461 7.5e-62 241.9 261 49.8
Oeu022737.1 Olea europaea HOM05D005894 ORTHO05D007461 1.4e-60 237.7 159 71.1
FAN06G4171 Fragaria x ananassa HOM05D005894 ORTHO05D007461 1.2e-48 198.0 143 70.6
SMO367G0414 Selaginella moellendorffii HOM05D005894 ORTHO05D007461 6.0e-43 179.1 143 58.0
RcHm_v2.0_Chr1g0360831 Rosa chinensis HOM05D005894 ORTHO05D007461 3.9e-42 176.4 197 50.8
EL10Ac1g00202 Beta vulgaris HOM05D005894 ORTHO05D007461 4.3e-41 172.9 147 60.5
Sc17g0001460 Simmondsia chinensis HOM05D005894 ORTHO05D387453 2.1e-40 170.6 308 34.7
RcHm_v2.0_Chr1g0360821 Rosa chinensis HOM05D005894 ORTHO05D007461 3.4e-38 163.3 105 71.4
unitig_21.g20129 Utricularia gibba HOM05D005894 ORTHO05D007461 7.6e-30 135.6 105 61.0
Sc22g0003370 Simmondsia chinensis HOM05D005894 ORTHO05D007461 4.0e-23 113.2 148 41.2
unitig_21.g20130 Utricularia gibba HOM05D005894 ORTHO05D007461 1.1e-17 95.1 143 37.8
unitig_52.g17562 Utricularia gibba HOM05D005894 ORTHO05D420364 4.3e-09 66.6 55 54.5
SMO195G0042 Selaginella moellendorffii HOM05D005894 ORTHO05D376219 1.4e-07 61.6 82 41.5


User provided reference genes

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