Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g39760 Coffea canephora HOM05D007199 ORTHO05D007257 1.2e-201 706.4 407 100.0
FAN03G0194 Fragaria x ananassa HOM05D007199 ORTHO05D007257 5.3e-19 99.8 359 29.2
FAN10G2445 Fragaria x ananassa HOM05D007199 ORTHO05D007257 2.6e-18 97.4 359 29.0
FAN10G3440 Fragaria x ananassa HOM05D007199 ORTHO05D007257 2.6e-18 97.4 359 29.0
Solyc10g009320.3 Solanum lycopersicum HOM05D007199 ORTHO05D007257 5.8e-18 96.3 352 30.4
Sopen10g005110 Solanum pennellii HOM05D007199 ORTHO05D007257 5.8e-18 96.3 352 32.1
Nitab4.5_0002638g0020 Nicotiana tabacum HOM05D007199 ORTHO05D007257 2.2e-17 94.4 359 29.8
FAN06G3172 Fragaria x ananassa HOM05D007199 ORTHO05D007257 2.9e-17 94.0 356 28.9
Dinv34240 Davidia involucrata HOM05D007199 ORTHO05D007257 4.9e-17 93.2 365 34.8
FvH4_7g17280 Fragaria vesca HOM05D007199 ORTHO05D007257 8.4e-17 92.4 356 28.7
CiPaw.02G043300 Carya illinoinensis HOM05D007199 ORTHO05D007257 1.4e-16 91.7 361 30.7
RcHm_v2.0_Chr1g0360641 Rosa chinensis HOM05D007199 ORTHO05D007257 1.4e-16 91.7 359 30.9
Haze_15700 Corylus avellana HOM05D007199 ORTHO05D007257 1.9e-16 91.3 370 29.7
Dinv32625 Davidia involucrata HOM05D007199 ORTHO05D007257 1.9e-16 91.3 364 33.0
FAN01G2057 Fragaria x ananassa HOM05D007199 ORTHO05D007257 2.5e-16 90.9 359 28.1
PGSC0003DMG400005529 Solanum tuberosum HOM05D007199 ORTHO05D007257 2.5e-16 90.9 352 31.0
Hma1.2p1_0309F.1_g120450 Hydrangea macrophylla HOM05D007199 ORTHO05D007257 7.9e-15 85.9 353 37.7
Medtr8g027100 Medicago truncatula HOM05D007199 ORTHO05D007257 7.9e-15 85.9 335 29.9
Phvul.010G116850 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 7.9e-15 85.9 321 31.5
Phvul.010G116900 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 7.9e-15 85.9 321 31.5
Psat4g216200 Pisum sativum HOM05D007199 ORTHO05D007257 7.9e-15 85.9 326 30.7
Glyma.16G021400 Glycine max HOM05D007199 ORTHO05D007257 1.0e-14 85.5 322 29.8
Peaxi162Scf00087g00199 Petunia axillaris HOM05D007199 ORTHO05D007257 1.8e-14 84.7 336 28.9
Prupe.2G194000 Prunus persica HOM05D007199 ORTHO05D007257 1.8e-14 84.7 369 31.7
Glyma.07G052500 Glycine max HOM05D007199 ORTHO05D007257 6.7e-14 82.8 323 31.0
MSTRG.17369 Avicennia marina HOM05D007199 ORTHO05D007257 8.7e-14 82.4 348 32.5
Duzib138G1694 Durio zibethinus HOM05D007199 ORTHO05D007257 1.5e-13 81.6 358 36.9
MD07G1155200 Malus domestica HOM05D007199 ORTHO05D007257 1.9e-13 81.3 367 31.1
QL08p046296 Quercus lobata HOM05D007199 ORTHO05D007257 4.3e-13 80.1 368 30.4
VMungo0331G0932 Vigna mungo HOM05D007199 ORTHO05D007257 4.3e-13 80.1 325 30.5
CiPaw.01G079500 Carya illinoinensis HOM05D007199 ORTHO05D007257 9.6e-13 79.0 365 33.4
Manes.05G019000 Manihot esculenta HOM05D007199 ORTHO05D007257 3.7e-12 77.0 358 34.1
ClCG06G002790 Citrullus lanatus HOM05D007199 ORTHO05D007257 4.8e-12 76.6 292 32.9
Gorai.004G150000 Gossypium raimondii HOM05D007199 ORTHO05D007257 6.2e-12 76.3 338 32.5
Ciclev10024292m.g Citrus clementina HOM05D007199 ORTHO05D007257 8.2e-12 75.9 292 29.1
vmacro12588 Vaccinium macrocarpon HOM05D007199 ORTHO05D007257 1.4e-11 75.1 100 44.0
CANSAT56G1498 Cannabis sativa HOM05D007199 ORTHO05D007257 1.8e-11 74.7 289 32.9
TAR629G0242 Trochodendron aralioides HOM05D007199 ORTHO05D007257 2.4e-11 74.3 364 31.0
Cpa.g.sc144.10 Carica papaya HOM05D007199 ORTHO05D007257 4.1e-11 73.6 362 34.8
COL.COLO4_06259 Corchorus olitorius HOM05D007199 ORTHO05D007257 4.1e-11 73.6 139 40.3
Rhsim01G0176600 Rhododendron simsii HOM05D007199 ORTHO05D007257 4.1e-11 73.6 144 41.0
Solyc01g096260.4 Solanum lycopersicum HOM05D007199 ORTHO05D007257 4.1e-11 73.6 332 27.4
Gohir.D08G145100 Gossypium hirsutum HOM05D007199 ORTHO05D007257 6.9e-11 72.8 338 32.2
Thecc.01G336800 Theobroma cacao HOM05D007199 ORTHO05D007257 6.9e-11 72.8 356 34.6
TWI23G0381 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 6.9e-11 72.8 328 28.7
Lj3g0002992 Lotus japonicus HOM05D007199 ORTHO05D007257 9.0e-11 72.4 338 28.7
Gohir.D11G103900 Gossypium hirsutum HOM05D007199 ORTHO05D007257 1.5e-10 71.6 360 31.1
Gorai.007G111200 Gossypium raimondii HOM05D007199 ORTHO05D007257 1.5e-10 71.6 360 31.1
Atru.chr5.734 Acer truncatum HOM05D007199 ORTHO05D007257 2.6e-10 70.9 359 33.4
MD00G1035800 Malus domestica HOM05D007199 ORTHO05D007257 3.4e-10 70.5 361 29.4
TPR.G15900 Trifolium pratense HOM05D007199 ORTHO05D007257 3.4e-10 70.5 329 29.8
TWI14G0585 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 4.5e-10 70.1 333 28.5
Actinidia25657 Actinidia chinensis HOM05D007199 ORTHO05D007257 1.0e-09 68.9 130 42.3
Nitab4.5_0014168g0010 Nicotiana tabacum HOM05D007199 ORTHO05D007257 1.0e-09 68.9 129 43.4
GSVIVG01027402001 Vitis vinifera HOM05D007199 ORTHO05D007257 1.0e-09 68.9 137 44.5
Gohir.A11G099400 Gossypium hirsutum HOM05D007199 ORTHO05D007257 1.3e-09 68.6 379 28.2
Potri.002G175300 Populus trichocarpa HOM05D007199 ORTHO05D007257 2.2e-09 67.8 321 37.1
CSS0043385 Camellia sinensis var. sinensis HOM05D007199 ORTHO05D007257 2.9e-09 67.4 134 39.6
DCAR_006984 Daucus carota HOM05D007199 ORTHO05D007257 2.9e-09 67.4 214 28.5
Ca_23498_v3 Cicer arietinum L. HOM05D007199 ORTHO05D007257 3.8e-09 67.0 98 45.9
Eucgr.E00024 Eucalyptus grandis HOM05D007199 ORTHO05D007257 3.8e-09 67.0 328 26.2
PGSC0003DMG400000126 Solanum tuberosum HOM05D007199 ORTHO05D007257 5.0e-09 66.6 109 49.5
Lalb_Chr10g0100741 Lupinus albus HOM05D007199 ORTHO05D007257 8.4e-09 65.9 325 28.9
Sopen01g040020 Solanum pennellii HOM05D007199 ORTHO05D007257 8.4e-09 65.9 113 46.0
Actinidia28100 Actinidia chinensis HOM05D007199 ORTHO05D007257 1.1e-08 65.5 135 37.8
Manes.01G254801 Manihot esculenta HOM05D007199 ORTHO05D007257 3.2e-08 63.9 118 40.7
Duzib133G0933 Durio zibethinus HOM05D007199 ORTHO05D007257 4.2e-08 63.5 134 39.6
CsaV3_6G008960 Cucumis sativus L. HOM05D007199 ORTHO05D007257 9.3e-08 62.4 141 36.2
Potri.014G102600 Populus trichocarpa HOM05D007199 ORTHO05D007257 9.3e-08 62.4 367 32.2
Lalb_Chr15g0076391 Lupinus albus HOM05D007199 ORTHO05D007257 1.2e-07 62.0 324 28.4
MELO3C022248.2 Cucumis melo HOM05D007199 ORTHO05D007257 1.6e-07 61.6 139 36.7
ECA236G3069 Erigeron canadensis HOM05D007199 ORTHO05D007257 2.7e-07 60.8 332 24.7
Sed0010537 Sechium edule HOM05D007199 ORTHO05D007257 4.6e-07 60.1 137 37.2
TAR375G0146 Trochodendron aralioides HOM05D007199 ORTHO05D007257 4.6e-07 60.1 325 27.4
Migut.B01906 Erythranthe guttata HOM05D007199 ORTHO05D007257 7.9e-07 59.3 127 40.2
Gorai.008G127500 Gossypium raimondii HOM05D007199 ORTHO05D007257 7.9e-07 59.3 125 40.0
Gohir.A12G114200 Gossypium hirsutum HOM05D007199 ORTHO05D007257 1.0e-06 58.9 125 40.8
Nn1g00376 Nelumbo nucifera HOM05D007199 ORTHO05D007257 1.0e-06 58.9 148 36.5
PSO782G1188 Papaver somniferum HOM05D007199 ORTHO05D007257 1.0e-06 58.9 320 28.1
Aa31LG1G28040 Aethionema arabicum HOM05D007199 ORTHO05D007257 1.3e-06 58.5 108 38.0
DCAR_002988 Daucus carota HOM05D007199 ORTHO05D007257 1.8e-06 58.2 133 35.3
Gohir.A08G124000 Gossypium hirsutum HOM05D007199 ORTHO05D007257 1.8e-06 58.2 106 41.5
SalBow5G5634 Salvia bowleyana HOM05D007199 ORTHO05D007257 5.1e-06 56.6 114 38.6
Carub.0004s2935 Capsella rubella HOM05D012720 ORTHO05D007257 8.7e-06 55.8 102 34.3


User provided reference genes

Program Settings