Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g39660 Coffea canephora HOM05D006425 ORTHO05D007312 0.0e+00 2182.5 1090 100.0
Oeu007875.1 Olea europaea HOM05D006425 ORTHO05D007312 0.0e+00 1588.5 1084 73.3
CSS0033565 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 0.0e+00 1566.6 1087 72.7
CAN.G1415.13 Capsicum annuum HOM05D006425 ORTHO05D007312 0.0e+00 1560.0 1078 73.0
Atru.chr5.713 Acer truncatum HOM05D006425 ORTHO05D007312 0.0e+00 1555.4 1093 71.6
Cfa003773 Carpinus fangiana HOM05D006425 ORTHO05D007312 0.0e+00 1552.3 1093 70.6
PGSC0003DMG400000238 Solanum tuberosum HOM05D006425 ORTHO05D007312 0.0e+00 1549.6 1078 72.6
MD07G1153800 Malus domestica HOM05D006425 ORTHO05D007312 0.0e+00 1546.9 1083 71.4
Haze_15687 Corylus avellana HOM05D006425 ORTHO05D007312 0.0e+00 1545.4 1121 69.3
QL08p046032 Quercus lobata HOM05D006425 ORTHO05D007312 0.0e+00 1540.0 1066 71.3
Sabra14G0074600 Salix brachista HOM05D006425 ORTHO05D007312 0.0e+00 1539.2 1097 69.4
Solyc01g096160.4 Solanum lycopersicum HOM05D006425 ORTHO05D007312 0.0e+00 1536.2 1078 72.7
Potri.014G101400 Populus trichocarpa HOM05D006425 ORTHO05D007312 0.0e+00 1535.8 1094 69.3
Lj7C496T17 Lonicera japonica HOM05D006425 ORTHO05D007312 0.0e+00 1527.7 1092 71.0
arahy.Tifrunner.gnm1.ann1.V6VX4F Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1526.5 1112 69.2
Manes.01G243600 Manihot esculenta HOM05D006425 ORTHO05D007312 0.0e+00 1526.5 1094 69.9
VMungo0540G0548 Vigna mungo HOM05D006425 ORTHO05D007312 0.0e+00 1522.3 1083 70.2
Thecc.01G338700 Theobroma cacao HOM05D006425 ORTHO05D007312 0.0e+00 1521.9 1085 69.8
TPR.G4756 Trifolium pratense HOM05D006425 ORTHO05D007312 0.0e+00 1518.8 1083 70.1
FvH4_7g17030 Fragaria vesca HOM05D006425 ORTHO05D007312 0.0e+00 1518.4 1084 70.8
Lj1g0017915 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1514.2 1077 69.6
RcHm_v2.0_Chr1g0360431 Rosa chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1511.9 1078 70.5
Ca_09524_v3 Cicer arietinum L. HOM05D006425 ORTHO05D007312 0.0e+00 1505.7 1079 69.9
Lalb_Chr04g0261441 Lupinus albus HOM05D006425 ORTHO05D007312 0.0e+00 1505.7 1079 69.8
TAR629G2477 Trochodendron aralioides HOM05D006425 ORTHO05D007312 0.0e+00 1505.0 1076 70.1
Sed0010112 Sechium edule HOM05D006425 ORTHO05D007312 0.0e+00 1504.2 1087 68.8
Duzib138G0057 Durio zibethinus HOM05D006425 ORTHO05D007312 0.0e+00 1503.8 1086 69.2
Phvul.006G115200 Phaseolus vulgaris HOM05D006425 ORTHO05D007312 0.0e+00 1502.3 1075 70.1
TWI23G0835 Tripterygium wilfordii HOM05D006425 ORTHO05D007312 0.0e+00 1501.9 1079 69.9
Eucgr.E03445 Eucalyptus grandis HOM05D006425 ORTHO05D007312 0.0e+00 1501.5 1081 69.8
PGR102G0287 Punica granatum HOM05D006425 ORTHO05D007312 0.0e+00 1501.1 1081 69.6
Migut.B01889 Erythranthe guttata HOM05D006425 ORTHO05D007312 0.0e+00 1500.7 1090 70.0
COL.COLO4_06242 Corchorus olitorius HOM05D006425 ORTHO05D007312 0.0e+00 1499.2 1102 68.1
Glyma.19G257700 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1499.2 1080 70.4
CsaV3_3G007870 Cucumis sativus L. HOM05D006425 ORTHO05D007312 0.0e+00 1491.5 1094 68.2
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 0.0e+00 1490.3 1075 70.2
Nn1g00347 Nelumbo nucifera HOM05D006425 ORTHO05D007312 0.0e+00 1489.9 1092 68.6
Glyma.03G259000 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1489.6 1072 69.6
arahy.Tifrunner.gnm1.ann1.GF075D Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1488.8 1119 67.5
Peaxi162Scf00345g00024 Petunia axillaris HOM05D006425 ORTHO05D007312 0.0e+00 1488.8 1078 71.2
Sp1g01070 Schrenkiella parvula HOM05D006425 ORTHO05D007312 0.0e+00 1485.7 1082 68.8
ECA236G2333 Erigeron canadensis HOM05D006425 ORTHO05D007312 0.0e+00 1484.5 1076 69.1
Gorai.008G127000 Gossypium raimondii HOM05D006425 ORTHO05D007312 0.0e+00 1484.2 1074 69.0
FAN10G2644 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1481.8 1067 70.1
FAN10G4300 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1479.9 1075 70.0
Gohir.D12G117200 Gossypium hirsutum HOM05D006425 ORTHO05D007312 0.0e+00 1479.9 1074 68.8
Cpa.g.sc139.7 Carica papaya HOM05D006425 ORTHO05D007312 0.0e+00 1479.5 1084 68.5
Psat3g001600 Pisum sativum HOM05D006425 ORTHO05D007312 0.0e+00 1478.8 1079 68.8
SGA_v2.0_scaffold22G09958 Striga asiatica HOM05D006425 ORTHO05D007312 0.0e+00 1476.5 1094 68.7
FAN06G4481 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1474.5 1071 70.1
Medtr7g117870 Medicago truncatula HOM05D006425 ORTHO05D007312 0.0e+00 1474.1 1080 68.6
BraA09t42237Z Brassica rapa HOM05D006425 ORTHO05D007312 0.0e+00 1469.9 1084 69.3
Thhalv10006637m.g Eutrema salsugineum HOM05D006425 ORTHO05D007312 0.0e+00 1468.8 1086 68.0
CARHR001250 Cardamine hirsuta HOM05D006425 ORTHO05D007312 0.0e+00 1463.7 1079 68.6
Rhsim07G0002300 Rhododendron simsii HOM05D006425 ORTHO05D007312 0.0e+00 1463.4 1089 69.1
A09p69000 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1461.8 1092 68.5
Nitab4.5_0006770g0030 Nicotiana tabacum HOM05D006425 ORTHO05D007312 0.0e+00 1459.5 1079 69.9
Aqoxy5G04315 Aquilegia oxysepala HOM05D006425 ORTHO05D007312 0.0e+00 1459.1 1083 67.6
BolC8t52871H Brassica oleracea HOM05D006425 ORTHO05D007312 0.0e+00 1458.4 1085 68.3
Carub.0008s1137 Capsella rubella HOM05D006425 ORTHO05D007312 0.0e+00 1458.4 1078 68.1
AL1G11260 Arabidopsis lyrata HOM05D006425 ORTHO05D007312 0.0e+00 1458.0 1073 68.3
MBI12_g20265_MAGBIO Magnolia biondii HOM05D006425 ORTHO05D007312 0.0e+00 1457.2 1090 67.1
FAN03G0670 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1456.4 1070 69.2
FAN06G3842 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1456.0 1074 69.4
HanXRQChr04g0120411 Helianthus annuus HOM05D006425 ORTHO05D007312 0.0e+00 1455.7 1080 68.0
FAN01G0442 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1454.9 1074 69.4
AUR62022731 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1451.0 1094 67.2
THA.LOC104815884 Tarenaya hassleriana HOM05D006425 ORTHO05D007312 0.0e+00 1450.3 1079 67.7
C08p53570 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1449.1 1086 67.9
GSVIVG01027188001 Vitis vinifera HOM05D006425 ORTHO05D007312 0.0e+00 1446.4 1083 66.5
PSO782G0220 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1439.9 1077 67.6
Sc13g0006630 Simmondsia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1439.5 1081 67.1
PSO063G5968 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1432.2 1080 67.7
Ah.05g179300 Amaranthus hybridus HOM05D006425 ORTHO05D007312 0.0e+00 1428.3 1078 67.2
Aa31LG1G10590 Aethionema arabicum HOM05D006425 ORTHO05D007312 0.0e+00 1417.1 1084 66.5
Hund27175 Selenicereus undatus HOM05D006425 ORTHO05D007312 0.0e+00 1414.4 1099 65.5
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 0.0e+00 1412.9 1064 67.1
MELO3C006005.2 Cucumis melo HOM05D006425 ORTHO05D007312 0.0e+00 1405.6 1087 66.1
AUR62004524 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1399.0 1090 66.0
SalBow3G3533 Salvia bowleyana HOM05D006425 ORTHO05D007312 0.0e+00 1395.2 1140 63.7
ClCG05G000660 Citrullus lanatus HOM05D006425 ORTHO05D007312 0.0e+00 1379.4 1083 65.1
vmacro04289 Vaccinium macrocarpon HOM05D006425 ORTHO05D007312 0.0e+00 1375.5 1207 60.6
ATR0757G210 Amborella trichopoda HOM05D006425 ORTHO05D007312 0.0e+00 1357.8 1085 64.3
Ciclev10018702m.g Citrus clementina HOM05D006425 ORTHO05D007312 0.0e+00 1346.6 952 70.6
HPP92_015094 Vanilla planifolia HOM05D006425 ORTHO05D007312 0.0e+00 1339.7 1088 63.7
Lsat_1_v5_gn_7_2761 Lactuca sativa HOM05D006425 ORTHO05D007312 0.0e+00 1333.9 1090 64.2
Os03g0115100 Oryza sativa ssp. japonica HOM05D006425 ORTHO05D007312 0.0e+00 1327.8 1090 62.9
AT1G01220 Arabidopsis thaliana HOM05D006425 ORTHO05D007312 0.0e+00 1327.0 946 69.6
Zm00001eb001000 Zea mays HOM05D006425 ORTHO05D007312 0.0e+00 1303.9 1087 61.9
Lj1g0006712 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1290.0 947 68.2
unitig_899.g14792 Utricularia gibba HOM05D006425 ORTHO05D007312 0.0e+00 1245.0 1073 60.6
SHI13064 Sapria himalayana HOM05D006425 ORTHO05D007312 0.0e+00 1238.8 1201 54.5
Nitab4.5_0000307g0050 Nicotiana tabacum HOM05D006425 ORTHO05D007312 0.0e+00 1180.6 968 65.0
CiPaw.02G042200 Carya illinoinensis HOM05D006425 ORTHO05D007312 0.0e+00 1130.2 760 73.0
Prupe.2G192700 Prunus persica HOM05D006425 ORTHO05D007312 0.0e+00 1091.3 758 71.5
Actinidia07981 Actinidia chinensis HOM05D006425 ORTHO05D007312 3.0e-311 1072.0 1080 54.3
EL10Ac1g00230 Beta vulgaris HOM05D006425 ORTHO05D007312 1.1e-294 1016.9 755 66.9
Gohir.A12G113700 Gossypium hirsutum HOM05D006425 ORTHO05D007312 1.1e-284 983.8 719 67.5
Mapoly0065s0064 Marchantia polymorpha HOM05D006425 ORTHO05D007312 2.2e-282 976.1 1081 48.8
Pp3c27_4880 Physcomitrium patens HOM05D006425 ORTHO05D007312 2.1e-256 889.8 1075 46.7
Sopen01g039900 Solanum pennellii HOM05D006425 ORTHO05D007312 1.2e-254 884.0 615 71.4
Actinidia20260 Actinidia chinensis HOM05D006425 ORTHO05D007312 4.9e-253 878.6 1017 51.1
SEGI_19319 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 1.7e-229 800.4 718 56.5
AagrBONN_evm.TU.Sc2ySwM_368.2372 Anthoceros agrestis HOM05D006425 ORTHO05D007312 1.3e-221 774.2 1020 44.0
BcaC07g42431 Brassica carinata HOM05D006425 ORTHO05D007312 4.6e-211 739.2 540 69.8
BcaC07g42430 Brassica carinata HOM05D006425 ORTHO05D007312 4.6e-195 686.0 513 66.9
Sed0002059 Sechium edule HOM05D006425 ORTHO05D007312 1.3e-186 657.9 656 53.7
CBR_g42133 Chara braunii HOM05D006425 ORTHO05D007312 6.5e-181 639.0 1513 31.5
Sopen01g039890 Solanum pennellii HOM05D006425 ORTHO05D007312 1.7e-165 587.8 403 75.7
Gohir.A12G113750 Gossypium hirsutum HOM05D006425 ORTHO05D007312 7.3e-124 449.5 339 68.4
Hma1.2p1_0180F.1_g079620 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 1.6e-83 315.5 196 77.6
MD01G1085000 Malus domestica HOM05D006425 ORTHO05D007312 1.1e-50 206.5 163 62.0
Hma1.2p1_0180F.1_g079630 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 7.7e-33 147.1 99 71.7
SEGI_38786 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 5.5e-23 114.4 59 83.1
Actinidia20216 Actinidia chinensis HOM05D006425 ORTHO05D007312 3.7e-19 101.7 54 81.5
VMungo0720G2246 Vigna mungo HOM05D006425 ORTHO05D007312 1.4e-13 83.2 65 55.4
SEGI_36326 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 1.5e-12 79.7 141 35.5
CSS0018706 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 9.2e-10 70.5 43 69.8
CSS0027474 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 9.2e-10 70.5 43 69.8
TPR.G10878 Trifolium pratense HOM05D020190 ORTHO05D018030 3.5e-09 68.6 86 43.0
TPR.G39590 Trifolium pratense HOM05D020190 ORTHO05D018030 7.8e-09 67.4 86 41.9
MCO11G284 Micromonas commoda HOM05D006425 ORTHO05D007312 1.0e-08 67.0 138 34.1
CSS0040683 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 3.0e-08 65.5 40 70.0


User provided reference genes

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