Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g39160 Coffea canephora HOM05D001772 ORTHO05D008903 4.1e-259 897.5 438 100.0
Dinv18731 Davidia involucrata HOM05D001772 ORTHO05D008903 2.1e-170 602.8 442 67.2
Lsat_1_v5_gn_3_139600 Lactuca sativa HOM05D001772 ORTHO05D008903 1.7e-164 583.2 441 66.0
Sopen05g028720 Solanum pennellii HOM05D001772 ORTHO05D008903 3.2e-163 578.9 418 67.9
Migut.N01555 Erythranthe guttata HOM05D001772 ORTHO05D008903 1.0e-161 573.9 440 65.0
CAN.G239.5 Capsicum annuum HOM05D001772 ORTHO05D008903 2.3e-161 572.8 441 63.0
TAR375G0197 Trochodendron aralioides HOM05D001772 ORTHO05D008903 6.7e-161 571.2 440 64.1
CSS0012714 Camellia sinensis var. sinensis HOM05D001772 ORTHO05D008903 8.7e-161 570.9 442 63.8
Potri.014G096700 Populus trichocarpa HOM05D001772 ORTHO05D008903 4.3e-160 568.5 439 63.8
GSVIVG01027076001 Vitis vinifera HOM05D001772 ORTHO05D008903 9.6e-160 567.4 443 64.3
QL04p013773 Quercus lobata HOM05D001772 ORTHO05D008903 6.2e-159 564.7 442 64.5
Thecc.01G344900 Theobroma cacao HOM05D001772 ORTHO05D008903 6.2e-159 564.7 448 62.5
PGSC0003DMG402033880 Solanum tuberosum HOM05D001772 ORTHO05D008903 8.1e-159 564.3 365 72.6
Gorai.008G124300 Gossypium raimondii HOM05D001772 ORTHO05D008903 2.4e-158 562.8 442 63.1
Gohir.A12G111500 Gossypium hirsutum HOM05D001772 ORTHO05D008903 3.1e-158 562.4 440 63.2
vmacro13174 Vaccinium macrocarpon HOM05D001772 ORTHO05D008903 5.3e-158 561.6 439 64.5
MD01G1078600 Malus domestica HOM05D001772 ORTHO05D008903 6.9e-158 561.2 439 63.6
Gohir.D12G114800 Gossypium hirsutum HOM05D001772 ORTHO05D008903 1.2e-157 560.5 442 63.1
RcHm_v2.0_Chr1g0359211 Rosa chinensis HOM05D001772 ORTHO05D008903 5.8e-157 558.1 437 63.2
MD07G1147600 Malus domestica HOM05D001772 ORTHO05D008903 2.2e-156 556.2 439 63.8
Manes.05G024600 Manihot esculenta HOM05D001772 ORTHO05D008903 2.2e-156 556.2 439 62.2
Solyc05g050320.4 Solanum lycopersicum HOM05D001772 ORTHO05D008903 2.9e-156 555.8 355 73.2
Prupe.2G185600 Prunus persica HOM05D001772 ORTHO05D008903 3.8e-156 555.4 440 63.2
FvH4_7g16200 Fragaria vesca HOM05D001772 ORTHO05D008903 3.2e-155 552.4 438 63.2
Oeu007903.1 Olea europaea HOM05D001772 ORTHO05D008903 5.5e-155 551.6 444 61.5
SalBow5G1378 Salvia bowleyana HOM05D001772 ORTHO05D008903 1.2e-154 550.4 469 59.7
Rhsim07G0005700 Rhododendron simsii HOM05D001772 ORTHO05D008903 1.6e-154 550.1 444 62.4
PGR042G2345 Punica granatum HOM05D001772 ORTHO05D008903 2.7e-154 549.3 440 63.2
Sabra14G0070800 Salix brachista HOM05D001772 ORTHO05D008903 2.7e-154 549.3 429 63.2
Cfa003819 Carpinus fangiana HOM05D001772 ORTHO05D008903 3.3e-152 542.3 433 63.0
Duzib138G1524 Durio zibethinus HOM05D001772 ORTHO05D008903 3.3e-152 542.3 366 68.3
Eucgr.E00067 Eucalyptus grandis HOM05D001772 ORTHO05D008903 3.3e-152 542.3 441 60.5
Peaxi162Scf00403g00519 Petunia axillaris HOM05D001772 ORTHO05D008903 3.3e-152 542.3 429 63.2
Ciclev10020231m.g Citrus clementina HOM05D001772 ORTHO05D008903 4.3e-152 542.0 440 61.4
TWI59G0809 Tripterygium wilfordii HOM05D001772 ORTHO05D008903 4.3e-152 542.0 440 61.6
Atru.chr5.644 Acer truncatum HOM05D001772 ORTHO05D008903 5.6e-152 541.6 442 61.5
Aqoxy7G00133 Aquilegia oxysepala HOM05D001772 ORTHO05D008903 8.2e-151 537.7 446 59.6
CANSAT56G1679 Cannabis sativa HOM05D001772 ORTHO05D008903 1.1e-150 537.3 447 61.3
TPR.G8988 Trifolium pratense HOM05D001772 ORTHO05D008903 1.4e-150 537.0 433 61.4
EL10Ac1g00295 Beta vulgaris HOM05D001772 ORTHO05D008903 1.8e-150 536.6 433 58.9
Thhalv10028671m.g Eutrema salsugineum HOM05D001772 ORTHO05D008903 4.0e-150 535.4 413 62.5
Sc01g0002840 Simmondsia chinensis HOM05D001772 ORTHO05D008903 6.9e-150 534.6 437 60.0
AUR62004469 Chenopodium quinoa HOM05D001772 ORTHO05D008903 1.2e-149 533.9 442 58.6
FAN01G1646 Fragaria x ananassa HOM05D001772 ORTHO05D008903 1.2e-149 533.9 436 62.2
AUR62023481 Chenopodium quinoa HOM05D001772 ORTHO05D008903 2.6e-149 532.7 442 58.4
FAN06G2365 Fragaria x ananassa HOM05D001772 ORTHO05D008903 2.6e-149 532.7 432 62.7
FAN06G4998 Fragaria x ananassa HOM05D001772 ORTHO05D008903 2.2e-148 529.6 437 62.2
FAN03G0169 Fragaria x ananassa HOM05D001772 ORTHO05D008903 2.9e-148 529.3 439 62.0
SGA_v2.0_scaffold11G05728 Striga asiatica HOM05D001772 ORTHO05D008903 2.9e-148 529.3 439 61.0
HanXRQChr11g0353031 Helianthus annuus HOM05D001772 ORTHO05D008903 8.4e-148 527.7 440 61.1
Medtr5g025480 Medicago truncatula HOM05D001772 ORTHO05D008903 1.4e-147 526.9 439 59.5
Ca_25036_v3 Cicer arietinum L. HOM05D001772 ORTHO05D008903 1.9e-147 526.6 438 58.9
VMungo0540G0918 Vigna mungo HOM05D001772 ORTHO05D008903 1.9e-147 526.6 364 68.4
Carub.0006s3610 Capsella rubella HOM05D001772 ORTHO05D008903 2.5e-147 526.2 431 59.4
Nitab4.5_0000258g0130 Nicotiana tabacum HOM05D001772 ORTHO05D008903 2.5e-147 526.2 435 62.1
CANSAT56G1036 Cannabis sativa HOM05D001772 ORTHO05D008903 3.2e-147 525.8 435 61.8
Psat2g145680 Pisum sativum HOM05D001772 ORTHO05D008903 5.5e-147 525.0 438 58.7
AT4G01040 Arabidopsis thaliana HOM05D001772 ORTHO05D008903 9.3e-147 524.2 430 59.3
Sp6g01100 Schrenkiella parvula HOM05D001772 ORTHO05D008903 1.2e-146 523.9 402 62.4
COL.COLO4_06307 Corchorus olitorius HOM05D001772 ORTHO05D008903 1.6e-146 523.5 440 58.9
Aa31LG5G920 Aethionema arabicum HOM05D001772 ORTHO05D008903 3.5e-146 522.3 435 59.3
FAN10G2954 Fragaria x ananassa HOM05D001772 ORTHO05D008903 4.6e-146 521.9 395 65.3
Nn3g19051 Nelumbo nucifera HOM05D001772 ORTHO05D008903 1.0e-145 520.8 430 60.5
arahy.Tifrunner.gnm1.ann1.HV5NER Arachis hypogaea HOM05D001772 ORTHO05D008903 1.8e-145 520.0 367 67.6
arahy.Tifrunner.gnm1.ann1.NY4TXX Arachis hypogaea HOM05D001772 ORTHO05D008903 3.9e-145 518.8 367 67.6
A03p31810 Brassica napus HOM05D001772 ORTHO05D008903 5.1e-145 518.5 422 60.2
CARHR249250 Cardamine hirsuta HOM05D001772 ORTHO05D008903 6.7e-145 518.1 433 58.9
BcaC01g06839 Brassica carinata HOM05D001772 ORTHO05D008903 3.3e-144 515.8 423 59.6
BolC3t16157H Brassica oleracea HOM05D001772 ORTHO05D008903 4.3e-144 515.4 422 60.0
THA.LOC104825876 Tarenaya hassleriana HOM05D001772 ORTHO05D008903 9.7e-144 514.2 434 58.5
BraA03t12356Z Brassica rapa HOM05D001772 ORTHO05D008903 1.3e-143 513.8 422 59.5
C03p38820 Brassica napus HOM05D001772 ORTHO05D008903 2.2e-143 513.1 422 59.7
DCAR_005380 Daucus carota HOM05D001772 ORTHO05D008903 4.8e-143 511.9 486 54.1
PSO135G0498 Papaver somniferum HOM05D001772 ORTHO05D008903 1.1e-142 510.8 395 62.5
Ah.05g179760 Amaranthus hybridus HOM05D001772 ORTHO05D008903 3.1e-142 509.2 443 56.7
PSO384G4631 Papaver somniferum HOM05D001772 ORTHO05D008903 3.1e-142 509.2 395 63.0
ClCG05G000920 Citrullus lanatus HOM05D001772 ORTHO05D008903 9.0e-142 507.7 442 58.8
Lj1g0009750 Lotus japonicus HOM05D001772 ORTHO05D008903 9.0e-142 507.7 430 58.1
Lalb_Chr04g0261581 Lupinus albus HOM05D001772 ORTHO05D008903 9.0e-142 507.7 419 59.2
Lj9A595T55 Lonicera japonica HOM05D001772 ORTHO05D008903 4.5e-141 505.4 322 72.7
CSS0002891 Camellia sinensis var. sinensis HOM05D001772 ORTHO05D008903 1.0e-140 504.2 407 61.4
Sed0004684 Sechium edule HOM05D001772 ORTHO05D008903 1.0e-140 504.2 392 62.5
MBI06_g46729_MAGBIO Magnolia biondii HOM05D001772 ORTHO05D008903 5.0e-140 501.9 422 59.7
Haze_15635 Corylus avellana HOM05D001772 ORTHO05D008903 7.2e-139 498.0 454 57.5
Hund27212 Selenicereus undatus HOM05D001772 ORTHO05D008903 7.2e-139 498.0 470 53.4
BcaB01g02345 Brassica carinata HOM05D001772 ORTHO05D008903 9.4e-139 497.7 422 57.8
CsaV3_3G008150 Cucumis sativus L. HOM05D001772 ORTHO05D008903 9.4e-139 497.7 404 62.1
Glyma.03G256800 Glycine max HOM05D001772 ORTHO05D008903 6.7e-137 491.5 386 63.5
CDE10G0091 Ceratophyllum demersum HOM05D001772 ORTHO05D008903 1.1e-134 484.2 427 57.6
ECA240G4072 Erigeron canadensis HOM05D001772 ORTHO05D008903 1.4e-134 483.8 348 67.0
Phvul.006G111900 Phaseolus vulgaris HOM05D001772 ORTHO05D008903 5.3e-134 481.9 321 71.3
Zm00001eb358410 Zea mays HOM05D001772 ORTHO05D008903 1.1e-128 464.2 416 55.0
HPP92_005515 Vanilla planifolia HOM05D001772 ORTHO05D008903 2.2e-127 459.9 429 55.7
MELO3C006034.2 Cucumis melo HOM05D001772 ORTHO05D008903 5.9e-125 451.8 442 55.7
Cpa.g.sc273.9 Carica papaya HOM05D001772 ORTHO05D008903 1.1e-110 404.4 355 58.9
SEGI_01392 Sequoiadendron giganteum HOM05D001772 ORTHO05D008903 1.0e-100 371.3 332 55.7
AL6G52340 Arabidopsis lyrata HOM05D001772 ORTHO05D008903 1.0e-97 361.3 253 67.2
Pp3c22_2040 Physcomitrium patens HOM05D001772 ORTHO05D008903 6.3e-95 352.1 425 42.6
Actinidia10113 Actinidia chinensis HOM05D001772 ORTHO05D008903 6.8e-89 332.0 284 58.8
Nitab4.5_0004506g0060 Nicotiana tabacum HOM05D001772 ORTHO05D008903 6.8e-89 332.0 433 44.6
AagrBONN_evm.TU.Sc2ySwM_344.1652 Anthoceros agrestis HOM05D001772 ORTHO05D008903 1.2e-88 331.3 411 42.6
Mapoly0102s0038 Marchantia polymorpha HOM05D001772 ORTHO05D008903 3.2e-86 323.2 341 46.3
SMO347G0199 Selaginella moellendorffii HOM05D001772 ORTHO05D008903 1.4e-81 307.8 337 47.5
SMO167G0031 Selaginella moellendorffii HOM05D001772 ORTHO05D008903 2.3e-81 307.0 333 47.1
CBR_g3968 Chara braunii HOM05D001772 ORTHO05D008903 3.2e-78 296.6 402 39.6
CiPaw.01G074400 Carya illinoinensis HOM05D001772 ORTHO05D008903 1.9e-75 287.3 236 58.9
Cre03.g200650 Chlamydomonas reinhardtii HOM05D001772 ORTHO05D008903 3.4e-56 223.4 374 32.1
ATR0589G019 Amborella trichopoda HOM05D001772 ORTHO05D008903 2.1e-50 204.1 181 56.9
Os01g0619800 Oryza sativa ssp. japonica HOM05D001772 ORTHO05D008903 3.1e-41 173.7 131 62.6
Nitab4.5_0015177g0010 Nicotiana tabacum HOM05D001772 ORTHO05D000634 7.6e-40 169.1 119 69.7
Zm00001eb297790 Zea mays HOM05D001772 ORTHO05D023027 1.1e-27 128.6 123 52.0
Glyma.19G255000 Glycine max HOM05D001772 ORTHO05D008903 3.8e-15 87.0 56 73.2
Nitab4.5_0015177g0020 Nicotiana tabacum HOM05D001772 ORTHO05D008903 3.2e-14 84.0 50 66.0
Zm00001eb098470 Zea mays HOM05D001772 ORTHO05D008903 9.4e-06 55.8 52 50.0


User provided reference genes

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