Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g38700 Coffea canephora HOM05D002932 ORTHO05D003208 1.5e-144 516.2 261 100.0
Oeu054360.1 Olea europaea HOM05D002932 ORTHO05D003208 2.6e-43 179.9 269 43.5
MSTRG.17303 Avicennia marina HOM05D002932 ORTHO05D003208 1.1e-41 174.5 256 44.5
Actinidia20171 Actinidia chinensis HOM05D002932 ORTHO05D003208 3.1e-41 172.9 261 44.8
MSTRG.4831 Avicennia marina HOM05D002932 ORTHO05D003208 2.7e-40 169.9 256 43.8
MSTRG.20870 Avicennia marina HOM05D002932 ORTHO05D003208 4.5e-40 169.1 259 42.9
Dinv43873 Davidia involucrata HOM05D002932 ORTHO05D003208 1.9e-38 163.7 281 40.2
Dinv32532 Davidia involucrata HOM05D002932 ORTHO05D003208 3.3e-38 162.9 260 42.7
Nitab4.5_0000305g0360 Nicotiana tabacum HOM05D002932 ORTHO05D003208 3.3e-38 162.9 278 39.9
Nitab4.5_0009475g0010 Nicotiana tabacum HOM05D002932 ORTHO05D003208 2.1e-37 160.2 275 39.6
SGA_v2.0_scaffold11G05690 Striga asiatica HOM05D002932 ORTHO05D003208 1.8e-36 157.1 260 39.2
Peaxi162Scf00020g00174 Petunia axillaris HOM05D002932 ORTHO05D003208 2.0e-35 153.7 271 40.6
Atru.chr5.594 Acer truncatum HOM05D002932 ORTHO05D003208 5.7e-35 152.1 260 40.0
CAN.G78.138 Capsicum annuum HOM05D002932 ORTHO05D003208 3.0e-31 139.8 290 37.9
PGR031G1724 Punica granatum HOM05D002932 ORTHO05D003208 3.3e-30 136.3 261 35.2
CSS0002659 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 7.3e-30 135.2 260 36.9
PGSC0003DMG402000198 Solanum tuberosum HOM05D002932 ORTHO05D003208 7.3e-30 135.2 285 38.6
Manes.01G251500 Manihot esculenta HOM05D002932 ORTHO05D003208 9.5e-30 134.8 261 35.6
CSS0013096 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 2.8e-29 133.3 260 36.9
Potri.014G091500 Populus trichocarpa HOM05D002932 ORTHO05D003208 4.0e-28 129.4 259 35.1
CAN.G694.15 Capsicum annuum HOM05D001716 ORTHO05D003208 6.8e-28 128.6 276 37.3
Ciclev10023540m.g Citrus clementina HOM05D002932 ORTHO05D003208 6.8e-28 128.6 257 37.0
SalBow3G2518 Salvia bowleyana HOM05D002932 ORTHO05D003208 2.0e-27 127.1 260 36.9
CAN.G959.5 Capsicum annuum HOM05D000001 ORTHO05D014548 3.4e-27 126.3 282 35.5
Sabra14G0066400 Salix brachista HOM05D002932 ORTHO05D003208 2.2e-26 123.6 260 35.8
Oeu063673.2 Olea europaea HOM05D002932 ORTHO05D003208 8.3e-26 121.7 255 37.3
Duzib138G0190 Durio zibethinus HOM05D002932 ORTHO05D003208 1.4e-25 120.9 266 35.0
Sopen01g039030 Solanum pennellii HOM05D002932 ORTHO05D003208 2.4e-25 120.2 275 34.2
Haze_15577 Corylus avellana HOM05D002932 ORTHO05D003208 4.1e-25 119.4 189 41.3
Haze_15582 Corylus avellana HOM05D002932 ORTHO05D003208 4.1e-25 119.4 189 41.3
GSVIVG01028788001 Vitis vinifera HOM05D003816 ORTHO05D004410 2.0e-24 117.1 260 33.8
Duzib133G1077 Durio zibethinus HOM05D002932 ORTHO05D003208 3.5e-24 116.3 258 32.6
Dinv35290 Davidia involucrata HOM05D002932 ORTHO05D003208 4.6e-24 115.9 260 32.3
Solyc01g095240.3 Solanum lycopersicum HOM05D002932 ORTHO05D003208 4.6e-24 115.9 274 33.9
Potri.015G026600 Populus trichocarpa HOM05D002932 ORTHO05D003208 7.8e-24 115.2 260 33.5
unitig_62.g23806 Utricularia gibba HOM05D001977 ORTHO05D002246 1.3e-23 114.4 254 36.2
TAR629G3108 Trochodendron aralioides HOM05D002932 ORTHO05D003208 3.9e-23 112.8 263 32.3
DCAR_006952 Daucus carota HOM05D002932 ORTHO05D003208 8.6e-23 111.7 258 33.7
Sabra15G0019600 Salix brachista HOM05D002932 ORTHO05D003208 1.1e-22 111.3 260 33.1
CiPaw.02G036300 Carya illinoinensis HOM05D002932 ORTHO05D003208 1.5e-22 110.9 280 34.3
Dinv28362 Davidia involucrata HOM05D002932 ORTHO05D003208 2.5e-22 110.2 260 31.9
Potri.012G035200 Populus trichocarpa HOM05D002932 ORTHO05D003208 3.3e-22 109.8 260 32.7
QL09p012032 Quercus lobata HOM05D002932 ORTHO05D003208 5.6e-22 109.0 263 31.9
Sabra15G0022400 Salix brachista HOM05D002932 ORTHO05D003208 2.1e-21 107.1 260 32.3
Nn1g01736 Nelumbo nucifera HOM05D002932 ORTHO05D003208 2.8e-21 106.7 261 32.2
Manes.14G020200 Manihot esculenta HOM05D002932 ORTHO05D003208 3.6e-21 106.3 260 32.7
TAR636G0499 Trochodendron aralioides HOM05D002932 ORTHO05D003208 3.6e-21 106.3 261 33.0
TAR374G1073 Trochodendron aralioides HOM05D002932 ORTHO05D003208 8.1e-21 105.1 260 30.4
vmacro06597 Vaccinium macrocarpon HOM05D002932 ORTHO05D003208 8.1e-21 105.1 263 31.6
Gohir.D08G148800 Gossypium hirsutum HOM05D002932 ORTHO05D003208 1.4e-20 104.4 258 32.6
Gorai.004G154500 Gossypium raimondii HOM05D002932 ORTHO05D003208 1.4e-20 104.4 258 32.6
Nn7g37319 Nelumbo nucifera HOM05D002932 ORTHO05D003208 1.8e-20 104.0 263 33.1
Sabra12G0024300 Salix brachista HOM05D002932 ORTHO05D003208 1.8e-20 104.0 263 31.2
Gohir.A08G127400 Gossypium hirsutum HOM05D002932 ORTHO05D003208 2.3e-20 103.6 260 32.7
Duzib068G0647 Durio zibethinus HOM05D002932 ORTHO05D003208 5.2e-20 102.4 260 30.0
Phvul.004G102700 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 6.8e-20 102.1 260 28.8
Actinidia03151 Actinidia chinensis HOM05D002932 ORTHO05D003208 8.9e-20 101.7 259 31.3
Manes.06G154700 Manihot esculenta HOM05D002932 ORTHO05D003208 8.9e-20 101.7 264 31.4
Hma1.2p1_0783F.1_g216930 Hydrangea macrophylla HOM05D002932 ORTHO05D003208 1.5e-19 100.9 211 34.1
Haze_00079 Corylus avellana HOM05D002932 ORTHO05D003208 2.0e-19 100.5 272 29.4
Duzib205G0983 Durio zibethinus HOM05D002932 ORTHO05D003208 2.0e-19 100.5 260 30.0
Hma1.2p1_0142F.1_g064300 Hydrangea macrophylla HOM05D002932 ORTHO05D003208 2.0e-19 100.5 260 30.8
VMungo0464G0277 Vigna mungo HOM05D002932 ORTHO05D003208 2.0e-19 100.5 260 28.8
Glyma.09G126400 Glycine max HOM05D002932 ORTHO05D003208 2.6e-19 100.1 261 29.5
Glyma.08G299600 Glycine max HOM05D002932 ORTHO05D003208 3.4e-19 99.8 261 33.3
Thecc.03G188500 Theobroma cacao HOM05D002932 ORTHO05D003208 3.4e-19 99.8 260 30.0
COL.COLO4_30256 Corchorus olitorius HOM05D002932 ORTHO05D003208 4.4e-19 99.4 260 30.8
Manes.05G028200 Manihot esculenta HOM05D002932 ORTHO05D003208 4.4e-19 99.4 261 29.9
Sed0008251 Sechium edule HOM05D002932 ORTHO05D003208 7.5e-19 98.6 270 32.2
Cpa.g.sc3.12 Carica papaya HOM05D002932 ORTHO05D003208 9.8e-19 98.2 259 30.9
Glyma.16G173400 Glycine max HOM05D002932 ORTHO05D003208 9.8e-19 98.2 261 28.0
Gohir.A12G254433 Gossypium hirsutum HOM05D002932 ORTHO05D003208 9.8e-19 98.2 263 32.7
Glyma.18G121000 Glycine max HOM05D002932 ORTHO05D003208 1.3e-18 97.8 257 33.1
Migut.B01809 Erythranthe guttata HOM05D002932 ORTHO05D003208 1.7e-18 97.4 204 37.7
ClCG05G008540 Citrullus lanatus HOM05D002932 ORTHO05D003208 2.2e-18 97.1 263 32.3
Cfa016327 Carpinus fangiana HOM05D002932 ORTHO05D003208 2.9e-18 96.7 268 29.5
CSS0021611 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 3.7e-18 96.3 254 30.3
MELO3C006960.2 Cucumis melo HOM05D002932 ORTHO05D003208 3.7e-18 96.3 264 32.2
Sed0015119 Sechium edule HOM05D002932 ORTHO05D003208 4.9e-18 95.9 268 31.3
CAN.G1578.16 Capsicum annuum HOM05D002932 ORTHO05D003208 8.3e-18 95.1 156 40.4
Phvul.007G077100 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 8.3e-18 95.1 263 30.4
Gohir.D12G255000 Gossypium hirsutum HOM05D002932 ORTHO05D003208 1.1e-17 94.7 260 32.7
Gorai.008G272600 Gossypium raimondii HOM05D002932 ORTHO05D003208 1.1e-17 94.7 260 32.7
Actinidia08604 Actinidia chinensis HOM05D002932 ORTHO05D003208 1.4e-17 94.4 263 30.8
CsaV3_3G021720 Cucumis sativus L. HOM05D002932 ORTHO05D003208 1.4e-17 94.4 264 31.8
Duzib084G0326 Durio zibethinus HOM05D002932 ORTHO05D003208 2.4e-17 93.6 261 29.1
Lalb_Chr21g0305311 Lupinus albus HOM05D002932 ORTHO05D003208 2.4e-17 93.6 264 29.5
EL10Ac3g05377 Beta vulgaris HOM05D002932 ORTHO05D003208 4.1e-17 92.8 266 34.2
CAN.G1578.6 Capsicum annuum HOM05D000129 ORTHO05D000997 5.4e-17 92.4 278 32.7
Eucgr.E00092 Eucalyptus grandis HOM05D002932 ORTHO05D003208 1.2e-16 91.3 256 34.4
Glyma.10G229200 Glycine max HOM05D002932 ORTHO05D003208 1.2e-16 91.3 263 30.4
Glyma.20G164000 Glycine max HOM05D002932 ORTHO05D003208 2.7e-16 90.1 260 29.6
CiPaw.06G005800 Carya illinoinensis HOM05D002932 ORTHO05D003208 3.5e-16 89.7 265 30.6
Sopen10g005630 Solanum pennellii HOM05D002932 ORTHO05D003208 3.5e-16 89.7 254 30.7
SGA_v2.0_scaffold4G02273 Striga asiatica HOM05D002932 ORTHO05D003208 4.6e-16 89.4 258 31.4
PGSC0003DMG400019420 Solanum tuberosum HOM05D002932 ORTHO05D003208 6.0e-16 89.0 260 31.2
HanXRQChr16g0523761 Helianthus annuus HOM05D002932 ORTHO05D003208 7.8e-16 88.6 257 35.8
Phvul.003G048900 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 7.8e-16 88.6 257 30.4
AUR62021078 Chenopodium quinoa HOM05D002932 ORTHO05D003208 1.0e-15 88.2 260 31.5
Rhsim03G0196300 Rhododendron simsii HOM05D002932 ORTHO05D003208 1.0e-15 88.2 264 29.5
COL.COLO4_06371 Corchorus olitorius HOM05D002932 ORTHO05D003208 1.3e-15 87.8 233 31.8
Lj2g0001659 Lotus japonicus HOM05D002932 ORTHO05D003208 1.3e-15 87.8 269 27.5
VMungo0720G0620 Vigna mungo HOM05D002932 ORTHO05D003208 1.7e-15 87.4 274 31.0
Psat1g106560 Pisum sativum HOM05D002932 ORTHO05D003208 2.3e-15 87.0 268 27.6
TPR.G7742 Trifolium pratense HOM05D002932 ORTHO05D003208 3.0e-15 86.7 262 30.5
arahy.Tifrunner.gnm1.ann1.N7QM32 Arachis hypogaea HOM05D002932 ORTHO05D003208 3.9e-15 86.3 283 26.5
Prupe.2G304400 Prunus persica HOM05D002932 ORTHO05D003208 3.9e-15 86.3 270 31.9
Ah.07g206300 Amaranthus hybridus HOM05D002932 ORTHO05D003208 5.1e-15 85.9 264 31.8
arahy.Tifrunner.gnm1.ann1.M5AIDB Arachis hypogaea HOM05D002932 ORTHO05D003208 5.1e-15 85.9 280 27.9
Rhsim09G0202600 Rhododendron simsii HOM05D002932 ORTHO05D003208 5.1e-15 85.9 260 29.6
Ah.13g069610 Amaranthus hybridus HOM05D002932 ORTHO05D003208 8.6e-15 85.1 263 30.4
Glyma.01G045900 Glycine max HOM05D002932 ORTHO05D003208 8.6e-15 85.1 256 30.1
PGR042G1004 Punica granatum HOM05D002932 ORTHO05D003208 8.6e-15 85.1 265 29.8
VMungo0251G1401 Vigna mungo HOM05D002932 ORTHO05D003208 1.1e-14 84.7 254 29.9
Lj5g0016966 Lotus japonicus HOM05D002932 ORTHO05D003208 1.5e-14 84.3 261 29.1
Lalb_Chr03g0035141 Lupinus albus HOM05D002932 ORTHO05D003208 1.5e-14 84.3 263 29.3
TPR.G37115 Trifolium pratense HOM05D002932 ORTHO05D003208 1.5e-14 84.3 193 35.2
Eucgr.K00306 Eucalyptus grandis HOM05D002932 ORTHO05D003208 1.9e-14 84.0 271 31.0
CSS0045579 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 2.5e-14 83.6 168 33.3
Lalb_Chr04g0256131 Lupinus albus HOM05D002932 ORTHO05D003208 3.3e-14 83.2 266 28.6
TWI59G0718 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 3.3e-14 83.2 175 35.4
Lalb_Chr01g0009541 Lupinus albus HOM05D002932 ORTHO05D003208 4.3e-14 82.8 264 27.3
Lsat_1_v5_gn_4_34860 Lactuca sativa HOM05D002932 ORTHO05D003208 9.5e-14 81.6 257 30.4
TWI14G1190 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 9.5e-14 81.6 262 27.5
Glyma.02G106200 Glycine max HOM05D002932 ORTHO05D003208 1.2e-13 81.3 257 30.4
AUR62031454 Chenopodium quinoa HOM05D002932 ORTHO05D003208 1.6e-13 80.9 142 36.6
Medtr6g034060 Medicago truncatula HOM05D002932 ORTHO05D003208 2.1e-13 80.5 275 26.5
Lalb_Chr02g0141341 Lupinus albus HOM05D002932 ORTHO05D003208 3.6e-13 79.7 265 27.5
Eucgr.A02685 Eucalyptus grandis HOM05D002932 ORTHO05D003208 4.7e-13 79.3 270 29.3
Medtr1g099440 Medicago truncatula HOM05D002932 ORTHO05D003208 8.1e-13 78.6 265 30.2
TWI23G0695 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 1.1e-12 78.2 209 29.2
TPR.G36623 Trifolium pratense HOM05D002932 ORTHO05D003208 1.8e-12 77.4 270 27.8
MD07G1282200 Malus domestica HOM05D002932 ORTHO05D003208 2.3e-12 77.0 276 29.3
Psat1g099320 Pisum sativum HOM05D002932 ORTHO05D003208 2.3e-12 77.0 265 26.4
unitig_0.g334 Utricularia gibba HOM05D002932 ORTHO05D003208 2.3e-12 77.0 257 33.5
Thecc.01G350800 Theobroma cacao HOM05D002932 ORTHO05D003208 3.1e-12 76.6 183 32.2
CSS0001843 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 5.2e-12 75.9 127 36.2
MD01G1211600 Malus domestica HOM05D002932 ORTHO05D003208 5.2e-12 75.9 279 28.3
Psat0s694g0080 Pisum sativum HOM05D002932 ORTHO05D003208 6.8e-12 75.5 263 27.4
TPR.G36701 Trifolium pratense HOM05D002932 ORTHO05D003208 8.9e-12 75.1 276 26.4
CsaV3_3G008520 Cucumis sativus L. HOM05D002932 ORTHO05D003208 2.0e-11 73.9 257 26.8
HanXRQChr14g0462641 Helianthus annuus HOM05D002932 ORTHO05D003208 2.6e-11 73.6 256 26.2
FAN03G0587 Fragaria x ananassa HOM05D002932 ORTHO05D003208 5.8e-11 72.4 272 27.6
MELO3C006073.2 Cucumis melo HOM05D002932 ORTHO05D003208 1.3e-10 71.2 257 25.7
Medtr6g034055 Medicago truncatula HOM05D002932 ORTHO05D003208 1.3e-10 71.2 272 26.8
PGR142G0585 Punica granatum HOM05D002932 ORTHO05D003208 1.7e-10 70.9 268 25.7
Atru.chr1.321 Acer truncatum HOM05D002932 ORTHO05D003208 2.2e-10 70.5 265 29.1
Sopen03g003700 Solanum pennellii HOM05D002932 ORTHO05D003208 2.2e-10 70.5 262 26.3
Ciclev10005884m.g Citrus clementina HOM05D002932 ORTHO05D003208 2.9e-10 70.1 250 28.0
vmacro10092 Vaccinium macrocarpon HOM05D002932 ORTHO05D003208 2.9e-10 70.1 115 38.3
Lj2g0019721 Lotus japonicus HOM05D002932 ORTHO05D003208 3.8e-10 69.7 259 30.9
CANSAT21G2430 Cannabis sativa HOM05D002932 ORTHO05D003208 4.9e-10 69.3 269 30.5
FvH4_7g30650 Fragaria vesca HOM05D002932 ORTHO05D003208 4.9e-10 69.3 273 27.8
FAN06G0995 Fragaria x ananassa HOM05D002932 ORTHO05D003208 4.9e-10 69.3 273 27.8
Psat1g099360 Pisum sativum HOM05D002932 ORTHO05D003208 6.4e-10 68.9 269 26.8
FAN10G0880 Fragaria x ananassa HOM05D002932 ORTHO05D003208 8.4e-10 68.6 273 27.8
FAN10G1573 Fragaria x ananassa HOM05D002932 ORTHO05D003208 8.4e-10 68.6 273 27.8
Psat1g099240 Pisum sativum HOM05D002932 ORTHO05D003208 1.1e-09 68.2 269 26.4
Oeu009283.1 Olea europaea HOM05D002932 ORTHO05D003208 1.4e-09 67.8 266 28.9
ECA238G1001 Erigeron canadensis HOM05D002932 ORTHO05D003208 2.4e-09 67.0 261 24.5
HanXRQChr07g0207101 Helianthus annuus HOM05D002932 ORTHO05D003208 7.1e-09 65.5 150 30.0
Medtr7g039720 Medicago truncatula HOM05D002932 ORTHO05D003208 9.2e-09 65.1 260 29.2
Oeu037130.1 Olea europaea HOM05D002932 ORTHO05D003208 9.2e-09 65.1 264 26.1
Sed0004021 Sechium edule HOM05D002932 ORTHO05D003208 1.2e-08 64.7 254 26.4
RcHm_v2.0_Chr1g0379591 Rosa chinensis HOM05D002932 ORTHO05D003208 2.7e-08 63.5 261 28.7
CAN.G926.8 Capsicum annuum HOM05D002932 ORTHO05D003208 4.6e-08 62.8 260 25.4
Gohir.D11G013600 Gossypium hirsutum HOM05D002932 ORTHO05D003208 4.6e-08 62.8 101 39.6
Medtr5g039840 Medicago truncatula HOM05D002932 ORTHO05D003208 7.8e-08 62.0 260 28.5
THA.LOC104811937 Tarenaya hassleriana HOM05D002932 ORTHO05D003208 7.8e-08 62.0 262 26.3
Gohir.A11G013400 Gossypium hirsutum HOM05D002932 ORTHO05D003208 1.0e-07 61.6 98 37.8
HanXRQChr13g0392281 Helianthus annuus HOM05D002932 ORTHO05D003208 1.7e-07 60.8 260 25.8
Solyc03g007775.2 Solanum lycopersicum HOM05D002932 ORTHO05D003208 1.7e-07 60.8 261 24.9
PGSC0003DMG400019964 Solanum tuberosum HOM05D002932 ORTHO05D003208 1.7e-07 60.8 271 25.8
FAN01G1179 Fragaria x ananassa HOM05D002932 ORTHO05D003208 2.3e-07 60.5 212 27.4
FAN06G4297 Fragaria x ananassa HOM05D002932 ORTHO05D003208 2.3e-07 60.5 212 27.4
THA.LOC104825123 Tarenaya hassleriana HOM05D002932 ORTHO05D003208 2.3e-07 60.5 258 29.1
MBI07_g44813_MAGBIO Magnolia biondii HOM05D002932 ORTHO05D003208 3.0e-07 60.1 266 25.2
Actinidia31853 Actinidia chinensis HOM05D002932 ORTHO05D003208 6.6e-07 58.9 206 27.7
Medtr6g034050 Medicago truncatula HOM05D002932 ORTHO05D003208 1.5e-06 57.8 263 22.8
SalBow4G2867 Salvia bowleyana HOM05D002932 ORTHO05D003208 4.3e-06 56.2 258 28.7
AT5G52900 Arabidopsis thaliana HOM05D002932 ORTHO05D003208 7.3e-06 55.5 265 27.2


User provided reference genes

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