Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 3.4e-25 117.5 56 100.0
Cc02_g38640 Coffea canephora HOM05D004554 ORTHO05D005360 3.4e-25 117.5 56 100.0
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 3.4e-25 117.5 56 100.0
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 3.4e-25 117.5 56 100.0
Lalb_Chr08g0237961 Lupinus albus HOM05D004554 ORTHO05D005360 3.4e-25 117.5 56 100.0
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 3.4e-25 117.5 56 100.0
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 3.4e-25 117.5 56 100.0
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 3.4e-25 117.5 56 100.0
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 3.4e-25 117.5 56 100.0
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 3.4e-25 117.5 56 100.0
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 3.4e-25 117.5 56 100.0
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 3.4e-25 117.5 56 100.0
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 5.7e-25 116.7 56 98.2
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 5.7e-25 116.7 56 98.2
CsaV3_2G019720 Cucumis sativus L. HOM05D004554 ORTHO05D005360 7.5e-25 116.3 56 96.4
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 7.5e-25 116.3 56 98.2
HanXRQChr09g0274931 Helianthus annuus HOM05D004554 ORTHO05D005360 9.8e-25 115.9 56 96.4
MD08G1243200 Malus domestica HOM05D004554 ORTHO05D005360 1.3e-24 115.5 56 98.2
MD15G1436800 Malus domestica HOM05D004554 ORTHO05D005360 1.3e-24 115.5 56 98.2
Rhsim12G0192800 Rhododendron simsii HOM05D004554 ORTHO05D005360 1.3e-24 115.5 56 98.2
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 1.3e-24 115.5 56 98.2
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.7e-24 115.2 56 98.2
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 1.7e-24 115.2 56 98.2
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 1.7e-24 115.2 56 98.2
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 1.7e-24 115.2 56 98.2
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 1.7e-24 115.2 56 98.2
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 1.7e-24 115.2 56 98.2
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 1.7e-24 115.2 56 98.2
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 1.7e-24 115.2 56 98.2
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 1.7e-24 115.2 56 98.2
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 1.7e-24 115.2 56 98.2
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 1.7e-24 115.2 56 98.2
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 1.7e-24 115.2 56 98.2
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 2.2e-24 114.8 56 96.4
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 2.2e-24 114.8 56 96.4
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 2.2e-24 114.8 56 96.4
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 2.8e-24 114.4 56 96.4
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 2.8e-24 114.4 56 96.4
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 3.7e-24 114.0 56 96.4
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 4.9e-24 113.6 56 96.4
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 4.9e-24 113.6 56 96.4
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 4.9e-24 113.6 56 96.4
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 4.9e-24 113.6 56 96.4
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 4.9e-24 113.6 56 96.4
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 4.9e-24 113.6 56 96.4
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 4.9e-24 113.6 56 94.6
Thhalv10001067m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 4.9e-24 113.6 56 96.4
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 4.9e-24 113.6 56 96.4
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 4.9e-24 113.6 56 96.4
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 4.9e-24 113.6 56 96.4
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 4.9e-24 113.6 56 94.6
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 4.9e-24 113.6 56 96.4
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 4.9e-24 113.6 56 96.4
Atru.chr2.1838 Acer truncatum HOM05D004554 ORTHO05D005360 6.3e-24 113.2 56 96.4
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 6.3e-24 113.2 56 96.4
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 6.3e-24 113.2 56 94.6
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 1.1e-23 112.5 56 94.6
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 1.1e-23 112.5 56 94.6
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 1.1e-23 112.5 56 94.6
Eucgr.L03064 Eucalyptus grandis HOM05D004554 ORTHO05D005360 1.1e-23 112.5 56 94.6
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.4e-23 112.1 56 96.4
Carub.0002s0990 Capsella rubella HOM05D004554 ORTHO05D005360 1.8e-23 111.7 56 94.6
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 1.8e-23 111.7 56 94.6
Carub.0002s2706 Capsella rubella HOM05D004554 ORTHO05D005360 1.8e-23 111.7 56 94.6
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 1.8e-23 111.7 56 94.6
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 1.8e-23 111.7 56 94.6
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 2.4e-23 111.3 56 94.6
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 2.4e-23 111.3 56 91.1
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 4.1e-23 110.5 56 92.9
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 5.4e-23 110.2 56 92.9
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 5.4e-23 110.2 56 92.9
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 5.4e-23 110.2 56 92.9
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 7.0e-23 109.8 56 92.9
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 7.0e-23 109.8 56 92.9
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 7.0e-23 109.8 56 91.1
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 7.0e-23 109.8 56 92.9
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 7.0e-23 109.8 56 92.9
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 9.2e-23 109.4 56 92.9
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 1.2e-22 109.0 56 91.1
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 1.2e-22 109.0 56 91.1
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 7.8e-22 106.3 56 89.3
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 1.7e-21 105.1 56 85.7
Lj9P502T35 Lonicera japonica HOM05D004554 ORTHO05D005360 1.7e-21 105.1 52 92.3
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 1.7e-21 105.1 56 87.5
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 2.3e-21 104.8 56 89.3
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 5.0e-21 103.6 56 85.7
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 6.6e-21 103.2 56 85.7
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 8.6e-21 102.8 73 74.0
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 1.4e-18 95.5 46 95.7
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 1.8e-18 95.1 46 93.5
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 4.0e-18 94.0 47 95.7
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 1.3e-13 79.0 40 92.5
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 1.9e-12 75.1 55 56.4
RcHm_v2.0_Chr2g0154941 Rosa chinensis HOM05D004554 ORTHO05D005360 7.3e-12 73.2 36 91.7
arahy.Tifrunner.gnm1.ann1.QTZM33 Arachis hypogaea HOM05D004554 ORTHO05D005360 2.3e-10 68.2 41 82.9
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 3.1e-10 67.8 56 51.8
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 5.2e-10 67.0 52 69.2
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 6.8e-10 66.6 52 63.5
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 6.8e-10 66.6 37 81.1
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 1.5e-09 65.5 54 46.3
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 2.6e-09 64.7 35 88.6
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 3.4e-09 64.3 31 96.8
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 5.8e-09 63.5 31 96.8
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 7.5e-09 63.2 45 73.3
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 9.8e-09 62.8 37 81.1
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 1.3e-08 62.4 62 58.1
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 7.0e-07 56.6 29 86.2
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 9.2e-07 56.2 25 100.0
Cpa.g.c40005 Carica papaya HOM05D004554 ORTHO05D005360 1.2e-06 55.8 25 96.0
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 3.5e-06 54.3 25 92.0
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 3.5e-06 54.3 25 92.0
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 6.0e-06 53.5 25 96.0


User provided reference genes

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