Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 6.4e-54 213.8 104 100.0
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 1.2e-36 156.4 112 72.3
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 2.7e-36 155.2 84 89.3
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 7.9e-36 153.7 86 87.2
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 1.0e-35 153.3 79 93.7
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 1.0e-35 153.3 82 90.2
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 1.3e-35 152.9 88 85.2
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 1.8e-35 152.5 82 90.2
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 3.0e-35 151.8 83 89.2
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 8.7e-35 150.2 77 93.5
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 1.9e-34 149.1 77 92.2
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 1.9e-34 149.1 77 90.9
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 1.9e-34 149.1 77 92.2
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 3.3e-34 148.3 79 91.1
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 4.3e-34 147.9 77 93.5
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 7.4e-34 147.1 84 86.9
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 9.6e-34 146.7 84 86.9
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.3e-33 146.4 77 90.9
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 1.3e-33 146.4 79 89.9
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 1.3e-33 146.4 91 81.3
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 1.3e-33 146.4 85 83.5
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 1.6e-33 146.0 98 74.5
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 1.6e-33 146.0 78 91.0
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 1.6e-33 146.0 78 91.0
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 2.1e-33 145.6 81 85.2
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 2.1e-33 145.6 81 85.2
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 2.1e-33 145.6 78 91.0
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 2.1e-33 145.6 77 90.9
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 2.8e-33 145.2 85 83.5
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 2.8e-33 145.2 85 83.5
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 2.8e-33 145.2 77 89.6
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 8.1e-33 143.7 79 86.1
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 8.1e-33 143.7 79 86.1
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.1e-32 143.3 77 90.9
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 1.8e-32 142.5 90 80.0
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 1.8e-32 142.5 95 76.8
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 3.1e-32 141.7 79 84.8
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 3.1e-32 141.7 94 74.5
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 4.0e-32 141.4 79 86.1
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 4.0e-32 141.4 75 86.7
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 4.0e-32 141.4 77 88.3
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 4.0e-32 141.4 77 89.6
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 5.3e-32 141.0 79 86.1
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 9.0e-32 140.2 77 85.7
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 1.2e-31 139.8 79 84.8
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 1.2e-31 139.8 79 84.8
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 1.2e-31 139.8 79 84.8
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 1.2e-31 139.8 79 86.1
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.5e-31 139.4 81 84.0
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 1.5e-31 139.4 76 86.8
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 1.5e-31 139.4 79 86.1
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 2.0e-31 139.0 77 84.4
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 2.0e-31 139.0 77 87.0
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 2.0e-31 139.0 77 87.0
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 2.0e-31 139.0 75 86.7
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 2.6e-31 138.7 77 84.4
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 2.6e-31 138.7 77 84.4
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 2.6e-31 138.7 77 84.4
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 2.6e-31 138.7 79 83.5
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 2.6e-31 138.7 77 84.4
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 2.6e-31 138.7 77 87.0
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 2.6e-31 138.7 77 85.7
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 2.6e-31 138.7 79 84.8
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 2.6e-31 138.7 77 84.4
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 2.6e-31 138.7 77 87.0
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 3.4e-31 138.3 78 85.9
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 3.4e-31 138.3 77 85.7
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 3.4e-31 138.3 77 88.3
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 3.4e-31 138.3 94 72.3
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 3.4e-31 138.3 77 85.7
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 4.5e-31 137.9 79 82.3
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 5.8e-31 137.5 77 85.7
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 5.8e-31 137.5 77 85.7
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 5.8e-31 137.5 77 84.4
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 5.8e-31 137.5 77 85.7
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 5.8e-31 137.5 83 81.9
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 7.6e-31 137.1 77 85.7
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 7.6e-31 137.1 77 85.7
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 7.6e-31 137.1 79 82.3
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 7.6e-31 137.1 79 82.3
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 7.6e-31 137.1 79 82.3
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 7.6e-31 137.1 77 84.4
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 7.6e-31 137.1 77 84.4
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 7.6e-31 137.1 77 87.0
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 1.0e-30 136.7 79 82.3
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 1.0e-30 136.7 79 82.3
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 1.0e-30 136.7 79 83.5
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 1.3e-30 136.3 77 84.4
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 1.3e-30 136.3 77 83.1
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 1.3e-30 136.3 77 83.1
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 1.3e-30 136.3 77 83.1
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 1.7e-30 136.0 94 72.3
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 1.7e-30 136.0 77 83.1
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 1.7e-30 136.0 70 91.4
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 2.9e-30 135.2 75 85.3
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 2.9e-30 135.2 75 85.3
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 2.9e-30 135.2 77 83.1
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 2.9e-30 135.2 77 83.1
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 3.8e-30 134.8 77 83.1
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 3.8e-30 134.8 77 81.8
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 3.8e-30 134.8 77 81.8
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 3.8e-30 134.8 77 81.8
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 4.9e-30 134.4 77 83.1
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 6.5e-30 134.0 77 81.8
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 6.5e-30 134.0 76 82.9
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 6.5e-30 134.0 95 72.6
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 8.4e-30 133.7 77 80.5
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 1.1e-29 133.3 75 86.7
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 1.1e-29 133.3 79 79.7
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 1.1e-29 133.3 77 80.5
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 2.5e-29 132.1 75 85.3
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 5.5e-29 131.0 73 83.6
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 7.1e-29 130.6 77 83.1
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 7.1e-29 130.6 77 83.1
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 9.3e-29 130.2 75 82.7
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 4.6e-28 127.9 75 81.3
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 4.6e-28 127.9 78 80.8
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 2.3e-27 125.6 77 72.7
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 3.0e-27 125.2 77 71.4
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 5.1e-27 124.4 70 88.6
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 1.1e-26 123.2 77 70.1
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 3.3e-26 121.7 71 80.3
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 5.7e-26 120.9 71 80.3
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 1.6e-25 119.4 76 72.4
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 3.7e-25 118.2 94 67.0
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 3.7e-25 118.2 94 67.0
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 2.4e-24 115.5 71 78.9
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 1.7e-22 109.4 56 91.1
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 2.2e-22 109.0 105 56.2
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 2.2e-22 109.0 70 62.9
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 1.1e-21 106.7 75 61.3
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 4.2e-21 104.8 52 96.2
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 1.8e-19 99.4 57 80.7
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 3.0e-19 98.6 56 82.1
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 5.1e-19 97.8 53 86.8
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 2.5e-18 95.5 68 70.6
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 1.1e-16 90.1 84 50.0
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 3.8e-14 81.6 69 52.2
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 1.1e-13 80.1 44 86.4
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 3.0e-11 72.0 87 48.3
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 8.8e-11 70.5 60 55.0
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 1.3e-09 66.6 75 41.3
QL11p051435 Quercus lobata HOM05D004554 ORTHO05D005360 1.7e-06 56.2 41 70.7


User provided reference genes

Program Settings