Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 3.0e-148 528.5 267 100.0
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.3e-119 433.3 266 80.8
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 3.8e-119 431.8 266 80.8
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 2.1e-117 426.0 268 82.1
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 3.4e-115 418.7 267 81.3
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 3.7e-114 415.2 266 79.3
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 2.7e-112 409.1 267 77.2
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 4.6e-112 408.3 269 78.8
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 1.0e-111 407.1 268 79.1
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 1.3e-111 406.8 268 79.5
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 2.3e-111 406.0 268 78.7
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 1.9e-110 402.9 267 77.5
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 8.0e-109 397.5 267 77.5
Oeu054338.1 Olea europaea HOM05D006032 ORTHO05D007544 5.2e-108 394.8 266 76.3
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 5.2e-108 394.8 266 75.9
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 6.8e-108 394.4 269 76.2
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 8.9e-108 394.0 268 76.9
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 1.2e-107 393.7 266 78.2
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 2.0e-107 392.9 266 78.2
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 4.9e-106 388.3 270 74.1
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 1.9e-105 386.3 280 74.3
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 7.0e-105 384.4 265 74.0
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 1.2e-104 383.6 266 75.9
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 1.2e-104 383.6 269 74.3
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 4.6e-104 381.7 269 75.5
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 7.8e-104 380.9 270 72.6
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 7.8e-104 380.9 265 72.8
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 3.0e-103 379.0 264 72.0
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 3.9e-103 378.6 271 72.7
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 3.9e-103 378.6 273 72.2
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 3.9e-103 378.6 271 74.5
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 6.6e-103 377.9 272 74.3
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 2.5e-102 375.9 273 72.2
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 5.6e-102 374.8 263 73.0
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 1.2e-101 373.6 270 71.5
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 2.8e-101 372.5 277 71.1
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 3.6e-101 372.1 271 72.3
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 3.6e-101 372.1 269 70.3
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 8.1e-101 370.9 275 73.5
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 1.4e-100 370.2 274 73.4
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 1.8e-100 369.8 270 71.1
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 4.0e-100 368.6 267 71.2
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 1.2e-99 367.1 270 72.2
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 1.5e-99 366.7 263 72.6
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 2.0e-99 366.3 269 70.3
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 4.4e-99 365.2 272 72.4
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 4.4e-99 365.2 272 71.0
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 7.5e-99 364.4 273 69.2
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 1.7e-98 363.2 269 69.9
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 2.9e-98 362.5 269 69.9
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 2.9e-98 362.5 269 69.9
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 1.1e-97 360.5 270 68.9
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 1.9e-97 359.8 262 69.5
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 1.9e-97 359.8 267 72.7
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 7.1e-97 357.8 263 70.3
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 7.1e-97 357.8 274 69.0
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 7.1e-97 357.8 262 71.0
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 1.6e-96 356.7 267 72.7
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 2.7e-96 355.9 268 69.0
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 3.5e-96 355.5 268 68.3
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 4.6e-96 355.1 271 67.5
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 1.0e-95 354.0 265 69.4
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 1.3e-95 353.6 267 68.9
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 1.3e-95 353.6 265 69.4
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 1.3e-95 353.6 265 69.4
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 1.7e-95 353.2 265 70.6
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 3.0e-95 352.4 267 67.4
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 3.9e-95 352.1 265 69.1
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 1.1e-94 350.5 263 69.2
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 1.5e-94 350.1 261 68.2
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.9e-94 349.7 261 70.1
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.9e-94 349.7 261 70.1
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 4.3e-94 348.6 267 67.8
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 4.3e-94 348.6 261 69.7
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 4.3e-94 348.6 261 69.7
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 5.6e-94 348.2 261 69.7
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 1.2e-93 347.1 271 66.8
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 2.8e-93 345.9 267 67.8
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 3.6e-93 345.5 273 68.5
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 3.6e-93 345.5 259 69.5
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 3.6e-93 345.5 259 69.5
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 4.7e-93 345.1 271 67.2
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 8.1e-93 344.4 309 62.1
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 8.1e-93 344.4 271 67.2
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 1.8e-92 343.2 237 72.6
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 5.2e-92 341.7 271 67.5
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 3.4e-91 339.0 271 66.8
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 7.6e-91 337.8 223 74.4
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 2.9e-90 335.9 265 64.9
Peaxi162Scf00815g00338 Petunia axillaris HOM05D006032 ORTHO05D007544 6.4e-90 334.7 183 89.6
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 8.4e-90 334.3 239 69.0
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 1.9e-89 333.2 242 70.2
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 4.1e-89 332.0 252 68.7
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 4.1e-89 332.0 252 68.7
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 1.2e-88 330.5 212 76.9
Potri.014G089100 Populus trichocarpa HOM05D006032 ORTHO05D007544 4.6e-88 328.6 262 66.0
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 6.0e-88 328.2 259 65.6
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 6.0e-88 328.2 259 65.6
HPP92_025634 Vanilla planifolia HOM05D006032 ORTHO05D007544 6.6e-87 324.7 264 63.3
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 1.6e-85 320.1 233 69.5
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 4.0e-84 315.5 263 65.4
vmacro20901 Vaccinium macrocarpon HOM05D006032 ORTHO05D007544 1.2e-83 313.9 271 63.8
Os03g0125000 Oryza sativa ssp. japonica HOM05D006032 ORTHO05D007544 1.3e-77 293.9 215 67.0
Zm00001eb001840 Zea mays HOM05D006032 ORTHO05D007544 1.1e-76 290.8 218 66.1
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 5.4e-73 278.5 239 63.2
Solyc09g007560.4 Solanum lycopersicum HOM05D006032 ORTHO05D007544 1.1e-70 270.8 178 80.3
A03p31970 Brassica napus HOM05D006032 ORTHO05D007544 1.8e-68 263.5 196 70.4
BraA03t12369Z Brassica rapa HOM05D006032 ORTHO05D007544 1.8e-68 263.5 196 70.4
Mapoly0001s0334 Marchantia polymorpha HOM05D006032 ORTHO05D007544 6.9e-68 261.5 236 55.1
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 3.4e-67 259.2 193 68.9
MBI04_g41504_MAGBIO Magnolia biondii HOM05D006032 ORTHO05D007544 1.7e-66 256.9 232 59.5
SMO358G0099 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 2.1e-64 250.0 180 64.4
Pp3c1_25850 Physcomitrium patens HOM05D006032 ORTHO05D007544 2.7e-64 249.6 250 50.0
AagrBONN_evm.TU.Sc2ySwM_228.1445 Anthoceros agrestis HOM05D006032 ORTHO05D007544 1.8e-63 246.9 194 58.2
Pp3c2_17110 Physcomitrium patens HOM05D006032 ORTHO05D007544 1.5e-62 243.8 239 49.8
MSTRG.17292 Avicennia marina HOM05D006032 ORTHO05D007544 5.1e-55 218.8 134 82.8
SEGI_08351 Sequoiadendron giganteum HOM05D006032 ORTHO05D007544 2.8e-53 213.0 141 70.2
Rhsim01G0165400 Rhododendron simsii HOM05D006032 ORTHO05D007544 2.8e-45 186.4 157 68.2
Haze_27649 Corylus avellana HOM05D006032 ORTHO05D007544 7.7e-43 178.3 153 51.6
COL.COLO4_27391 Corchorus olitorius HOM05D006032 ORTHO05D007544 8.5e-42 174.9 113 74.3
Sabra14G0064700 Salix brachista HOM05D006032 ORTHO05D007544 3.9e-39 166.0 115 69.6
Cfa021143 Carpinus fangiana HOM05D006032 ORTHO05D001488 7.4e-38 161.8 196 41.3
C02p38190 Brassica napus HOM05D006032 ORTHO05D007544 3.4e-35 152.9 266 39.1
BolC2t09834H Brassica oleracea HOM05D006032 ORTHO05D007544 3.4e-35 152.9 266 39.1
BcaC03g16053 Brassica carinata HOM05D006032 ORTHO05D007544 5.9e-35 152.1 266 39.1
Actinidia02824 Actinidia chinensis HOM05D006032 ORTHO05D007544 1.8e-31 140.6 89 79.8
Nitab4.5_0000681g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.7e-29 134.0 76 89.5
Nitab4.5_0000681g0060 Nicotiana tabacum HOM05D006032 ORTHO05D007544 4.5e-27 125.9 70 85.7
SMO196G0051 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 7.7e-27 125.2 179 36.9
VMungo1309G2152 Vigna mungo HOM05D006032 ORTHO05D007544 2.4e-20 103.6 81 67.9
Rhsim12G0138600 Rhododendron simsii HOM05D006032 ORTHO05D007544 3.6e-16 89.7 90 63.3
Cfa024600 Carpinus fangiana HOM05D006032 ORTHO05D122942 1.0e-15 88.2 170 31.8
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 1.0e-15 88.2 66 68.2
Psat2g092280 Pisum sativum HOM05D006032 ORTHO05D007544 4.4e-14 82.8 60 68.3
unitig_8.g3788 Utricularia gibba HOM05D006032 ORTHO05D007544 1.6e-11 74.3 102 44.1
Dinv43855 Davidia involucrata HOM05D006032 ORTHO05D007544 4.5e-11 72.8 39 87.2
FvH4_5g19211 Fragaria vesca HOM05D006032 ORTHO05D197553 2.3e-07 60.5 43 74.4
Sc24g0002240 Simmondsia chinensis HOM05D006032 ORTHO05D007544 8.8e-07 58.5 54 55.6


User provided reference genes

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