Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g38030 Coffea canephora HOM05D000509 ORTHO05D006393 3.6e-109 398.3 206 100.0
Nitab4.5_0000583g0080 Nicotiana tabacum HOM05D000509 ORTHO05D006393 6.3e-29 131.7 134 55.2
CAN.G78.80 Capsicum annuum HOM05D000509 ORTHO05D006393 4.1e-28 129.0 138 52.9
Dinv41795 Davidia involucrata HOM05D000509 ORTHO05D006393 5.4e-28 128.6 144 50.7
Nitab4.5_0006762g0030 Nicotiana tabacum HOM05D000509 ORTHO05D006393 1.6e-27 127.1 145 50.3
PGSC0003DMG400000042 Solanum tuberosum HOM05D000509 ORTHO05D006393 4.5e-27 125.6 134 52.2
CSS0014656 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 1.8e-23 113.6 145 49.7
MSTRG.20833 Avicennia marina HOM05D000509 ORTHO05D006393 2.3e-23 113.2 134 49.3
Solyc01g094630.3 Solanum lycopersicum HOM05D000509 ORTHO05D006393 1.2e-22 110.9 134 48.5
Rhsim07G0117300 Rhododendron simsii HOM05D000509 ORTHO05D006393 4.4e-22 109.0 139 45.3
Eucgr.B00880 Eucalyptus grandis HOM05D000509 ORTHO05D006393 9.8e-22 107.8 134 48.5
Actinidia12704 Actinidia chinensis HOM05D000509 ORTHO05D006393 1.3e-21 107.5 138 48.6
Eucgr.B00993 Eucalyptus grandis HOM05D000509 ORTHO05D006393 1.7e-21 107.1 134 48.5
Sabra02G0116600 Salix brachista HOM05D000509 ORTHO05D006393 2.2e-21 106.7 133 50.4
TWI14G0500 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 2.9e-21 106.3 132 45.5
CiPaw.01G061300 Carya illinoinensis HOM05D000509 ORTHO05D006393 6.4e-21 105.1 139 48.2
GSVIVG01008341001 Vitis vinifera HOM05D000509 ORTHO05D006393 1.4e-20 104.0 121 50.4
Cpa.g.sc11.3 Carica papaya HOM05D000509 ORTHO05D006393 1.8e-20 103.6 136 46.3
Sopen01g038440 Solanum pennellii HOM05D000509 ORTHO05D006393 1.8e-20 103.6 134 47.0
VMungo0540G0837 Vigna mungo HOM05D000509 ORTHO05D006393 2.4e-20 103.2 146 45.2
Haze_15506 Corylus avellana HOM05D000509 ORTHO05D006393 3.2e-20 102.8 129 46.5
Potri.016G069200 Populus trichocarpa HOM05D000509 ORTHO05D006393 3.2e-20 102.8 135 49.6
SGA_v2.0_scaffold95G28834 Striga asiatica HOM05D000509 ORTHO05D006393 4.1e-20 102.4 136 43.4
DCAR_019105 Daucus carota HOM05D000509 ORTHO05D006393 9.2e-20 101.3 138 46.4
Gohir.A02G020500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 9.2e-20 101.3 131 48.1
Gohir.A08G013720 Gossypium hirsutum HOM05D000509 ORTHO05D006393 9.2e-20 101.3 131 48.1
Gorai.005G030400 Gossypium raimondii HOM05D000509 ORTHO05D006393 9.2e-20 101.3 128 48.4
arahy.Tifrunner.gnm1.ann1.E8SAKG Arachis hypogaea HOM05D000509 ORTHO05D006393 1.2e-19 100.9 127 48.0
Gohir.D02G024500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 1.2e-19 100.9 128 47.7
CiPaw.02G030900 Carya illinoinensis HOM05D000509 ORTHO05D006393 1.6e-19 100.5 139 43.9
Ca_07920_v3 Cicer arietinum L. HOM05D000509 ORTHO05D006393 1.6e-19 100.5 122 47.5
VMungo1383G0114 Vigna mungo HOM05D000509 ORTHO05D006393 2.0e-19 100.1 135 46.7
Glyma.18G233000 Glycine max HOM05D000509 ORTHO05D006393 2.7e-19 99.8 139 44.6
TWI23G0635 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 2.7e-19 99.8 182 40.1
arahy.Tifrunner.gnm1.ann1.NYL5F5 Arachis hypogaea HOM05D000509 ORTHO05D006393 4.6e-19 99.0 127 47.2
CSS0014005 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 7.8e-19 98.2 147 45.6
Lj1g0015308 Lotus japonicus HOM05D000509 ORTHO05D006393 7.8e-19 98.2 143 46.9
Medtr8g095630 Medicago truncatula HOM05D000509 ORTHO05D006393 7.8e-19 98.2 137 44.5
Phvul.008G065500 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 7.8e-19 98.2 123 46.3
Thecc.04G199400 Theobroma cacao HOM05D000509 ORTHO05D006393 1.0e-18 97.8 132 46.2
Actinidia33421 Actinidia chinensis HOM05D001542 ORTHO05D001416 1.3e-18 97.4 193 39.4
Cfa003925 Carpinus fangiana HOM05D000509 ORTHO05D006393 1.3e-18 97.4 122 49.2
MBI17_g24690_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 1.3e-18 97.4 136 47.1
MD07G1137000 Malus domestica HOM05D000509 ORTHO05D006393 1.3e-18 97.4 139 42.4
SalBow6G4776 Salvia bowleyana HOM05D000509 ORTHO05D006393 1.7e-18 97.1 136 44.9
QL93p0259_0027 Quercus lobata HOM05D000509 ORTHO05D006393 2.3e-18 96.7 136 44.1
PGR042G3203 Punica granatum HOM05D000509 ORTHO05D006393 3.0e-18 96.3 135 44.4
ECA233G2837 Erigeron canadensis HOM05D000509 ORTHO05D006393 5.0e-18 95.5 135 45.9
Manes.10G122200 Manihot esculenta HOM05D000509 ORTHO05D006393 6.6e-18 95.1 138 47.1
EL10Ac4g09051 Beta vulgaris HOM05D000509 ORTHO05D006393 8.6e-18 94.7 186 38.7
FvH4_7g14280 Fragaria vesca HOM05D000509 ORTHO05D006393 1.5e-17 94.0 138 44.9
Phvul.008G062400 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 1.5e-17 94.0 123 44.7
Nn6g33420 Nelumbo nucifera HOM05D000509 ORTHO05D006393 1.9e-17 93.6 141 48.2
Rhsim07G0117600 Rhododendron simsii HOM05D000509 ORTHO05D006393 2.5e-17 93.2 139 43.9
Prupe.2G170600 Prunus persica HOM05D000509 ORTHO05D006393 7.3e-17 91.7 138 42.0
QL01p005382 Quercus lobata HOM05D000509 ORTHO05D006393 9.5e-17 91.3 138 42.0
Dinv32484 Davidia involucrata HOM05D000509 ORTHO05D006393 1.2e-16 90.9 112 46.4
AUR62004883 Chenopodium quinoa HOM05D000509 ORTHO05D006393 1.6e-16 90.5 136 44.9
Ah.04g163760 Amaranthus hybridus HOM05D000509 ORTHO05D006393 2.1e-16 90.1 125 46.4
Prupe.1G174800 Prunus persica HOM05D000509 ORTHO05D006393 2.1e-16 90.1 134 38.8
Psat3g108360 Pisum sativum HOM05D000509 ORTHO05D006393 4.7e-16 89.0 131 44.3
CDE09G0401 Ceratophyllum demersum HOM05D000509 ORTHO05D006393 8.0e-16 88.2 127 44.1
Manes.07G019100 Manihot esculenta HOM05D000509 ORTHO05D006393 8.0e-16 88.2 139 43.2
FAN03G2840 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.1e-15 87.8 138 42.8
unitig_0.g1262 Utricularia gibba HOM05D000509 ORTHO05D006393 1.1e-15 87.8 110 50.9
Hund14886 Selenicereus undatus HOM05D000509 ORTHO05D006393 1.4e-15 87.4 172 38.4
Ciclev10022504m.g Citrus clementina HOM05D000509 ORTHO05D006393 1.8e-15 87.0 118 41.5
Duzib151G0093 Durio zibethinus HOM05D000509 ORTHO05D006393 1.8e-15 87.0 134 43.3
MD01G1060700 Malus domestica HOM05D000509 ORTHO05D006393 3.1e-15 86.3 178 33.7
RcHm_v2.0_Chr1g0355271 Rosa chinensis HOM05D000509 ORTHO05D006393 3.1e-15 86.3 138 44.2
FAN10G1528 Fragaria x ananassa HOM05D000509 ORTHO05D006393 4.0e-15 85.9 138 42.0
FAN10G1645 Fragaria x ananassa HOM05D000509 ORTHO05D006393 4.0e-15 85.9 138 42.0
Rhsim07G0118400 Rhododendron simsii HOM05D000509 ORTHO05D006393 4.0e-15 85.9 115 44.3
Aqoxy2G02281 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 6.8e-15 85.1 129 42.6
Lalb_Chr03g0038131 Lupinus albus HOM05D000509 ORTHO05D006393 1.2e-14 84.3 134 44.0
TAR636G2420 Trochodendron aralioides HOM05D000509 ORTHO05D006393 2.6e-14 83.2 126 46.8
Medtr7g077710 Medicago truncatula HOM05D000509 ORTHO05D006393 7.5e-14 81.6 94 47.9
FAN06G1484 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.3e-13 80.9 161 38.5
Lsat_1_v5_gn_8_97941 Lactuca sativa HOM05D002211 ORTHO05D002206 1.3e-13 80.9 98 46.9
EL10Ac8g20190 Beta vulgaris HOM05D000509 ORTHO05D006393 2.2e-13 80.1 130 43.8
CANSAT56G2260 Cannabis sativa HOM05D000509 ORTHO05D006393 2.2e-13 80.1 130 41.5
THA.LOC104798540 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 4.9e-13 79.0 122 42.6
Zm00001eb039300 Zea mays HOM05D000509 ORTHO05D006393 6.4e-13 78.6 128 43.0
vmacro20943 Vaccinium macrocarpon HOM05D000509 ORTHO05D006393 8.3e-13 78.2 121 44.6
FAN06G3105 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.1e-12 77.8 118 46.6
AUR62001076 Chenopodium quinoa HOM05D000509 ORTHO05D006393 1.9e-12 77.0 153 35.3
Eucgr.L01454 Eucalyptus grandis HOM05D000509 ORTHO05D006393 1.9e-12 77.0 99 46.5
FAN01G0359 Fragaria x ananassa HOM05D000509 ORTHO05D006393 2.4e-12 76.6 136 39.0
MBI17_g24691_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 9.2e-12 74.7 120 45.0
THA.LOC104820589 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 3.0e-10 69.7 135 35.6
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 3.9e-10 69.3 124 37.9
GSVIVG01003391001 Vitis vinifera HOM05D000509 ORTHO05D006393 5.0e-10 68.9 100 46.0
Peaxi162Scf00020g00322 Petunia axillaris HOM05D000509 ORTHO05D006393 8.6e-10 68.2 70 51.4
QL08p048801 Quercus lobata HOM05D000509 ORTHO05D006393 8.6e-10 68.2 114 43.0
TPR.G37720 Trifolium pratense HOM05D000509 ORTHO05D006393 2.5e-09 66.6 112 42.0
Aa31LG1G27330 Aethionema arabicum HOM05D000509 ORTHO05D006393 3.3e-09 66.2 85 42.4
BraA09t40768Z Brassica rapa HOM05D000509 ORTHO05D006393 7.3e-09 65.1 90 42.2
Sp5g02030 Schrenkiella parvula HOM05D000509 ORTHO05D006393 7.3e-09 65.1 87 40.2
CsaV3_6G000560 Cucumis sativus L. HOM05D000509 ORTHO05D006393 9.5e-09 64.7 157 35.0
Ah.12g064210 Amaranthus hybridus HOM05D000509 ORTHO05D006393 1.2e-08 64.3 107 42.1
A09p53420 Brassica napus HOM05D000509 ORTHO05D006393 1.6e-08 63.9 81 44.4
ATR0680G086 Amborella trichopoda HOM05D000509 ORTHO05D006393 3.6e-08 62.8 122 37.7
DCAR_015993 Daucus carota HOM05D000509 ORTHO05D006393 3.6e-08 62.8 88 45.5
AT3G61370 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 4.7e-08 62.4 104 40.4
Migut.B01755 Erythranthe guttata HOM05D000509 ORTHO05D006393 6.2e-08 62.0 145 34.5
Potri.006G202400 Populus trichocarpa HOM05D000509 ORTHO05D006393 6.2e-08 62.0 87 46.0
HanXRQChr09g0257651 Helianthus annuus HOM05D000509 ORTHO05D006393 8.1e-08 61.6 92 44.6
Sed0001004 Sechium edule HOM05D000509 ORTHO05D006393 8.1e-08 61.6 142 34.5
PSO478G1119 Papaver somniferum HOM05D000509 ORTHO05D006393 1.1e-07 61.2 83 42.2
PSO782G0796 Papaver somniferum HOM05D000509 ORTHO05D006393 1.1e-07 61.2 134 33.6
C08p36230 Brassica napus HOM05D000509 ORTHO05D006393 1.4e-07 60.8 94 39.4
BolC8t51205H Brassica oleracea HOM05D000509 ORTHO05D006393 1.4e-07 60.8 94 39.4
COL.COLO4_20186 Corchorus olitorius HOM05D000509 ORTHO05D006393 1.4e-07 60.8 100 43.0
Glyma.09G259300 Glycine max HOM05D000509 ORTHO05D006393 1.8e-07 60.5 83 44.6
QL10p007195 Quercus lobata HOM05D000509 ORTHO05D006393 1.8e-07 60.5 68 48.5
Medtr8g095650 Medicago truncatula HOM05D000509 ORTHO05D006393 2.3e-07 60.1 87 42.5
Thhalv10006311m.g Eutrema salsugineum HOM05D000509 ORTHO05D006393 4.0e-07 59.3 81 39.5
Os08g0559700 Oryza sativa ssp. japonica HOM05D000509 ORTHO05D006393 4.0e-07 59.3 119 39.5
CARHR171710 Cardamine hirsuta HOM05D000509 ORTHO05D006393 1.5e-06 57.4 81 39.5
MELO3C021209.2 Cucumis melo HOM05D000509 ORTHO05D006393 1.5e-06 57.4 142 34.5
A04p01140 Brassica napus HOM05D000509 ORTHO05D006393 5.8e-06 55.5 124 31.5
BraA04t15830Z Brassica rapa HOM05D000509 ORTHO05D006393 5.8e-06 55.5 124 31.5
SEGI_38599 Sequoiadendron giganteum HOM05D000509 ORTHO05D006393 5.8e-06 55.5 149 30.9
Aqoxy7G00306 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 9.9e-06 54.7 105 41.0


User provided reference genes

Program Settings