Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 7.7e-239 830.1 422 100.0
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 2.1e-175 619.4 413 75.3
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 7.1e-168 594.3 413 72.2
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 3.5e-167 592.0 413 71.9
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 1.6e-164 583.2 413 70.7
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 1.2e-162 577.0 413 69.5
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 1.4e-160 570.1 374 74.1
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 6.6e-158 561.2 410 70.2
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 6.2e-156 554.7 414 67.4
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 6.2e-156 554.7 359 75.5
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 1.8e-155 553.1 414 69.1
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 3.1e-155 552.4 415 68.2
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 6.9e-155 551.2 411 69.6
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 2.0e-154 549.7 415 68.2
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 4.5e-154 548.5 411 69.8
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 7.6e-154 547.7 420 65.5
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 3.8e-153 545.4 397 68.8
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 6.4e-153 544.7 407 68.1
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 1.4e-152 543.5 406 68.5
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 1.9e-152 543.1 406 68.5
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 3.2e-152 542.3 413 66.3
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 4.2e-152 542.0 409 69.2
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 7.1e-152 541.2 409 68.5
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 2.1e-151 539.7 369 74.0
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 2.7e-151 539.3 401 68.6
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 4.6e-151 538.5 415 66.5
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 7.9e-151 537.7 407 66.8
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 1.0e-150 537.3 412 66.5
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 3.9e-150 535.4 408 67.6
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 5.1e-150 535.0 407 68.3
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 1.5e-149 533.5 414 67.6
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 1.5e-149 533.5 378 71.2
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 1.5e-149 533.5 422 64.2
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 2.5e-149 532.7 404 68.1
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 5.6e-149 531.6 417 66.2
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 1.3e-148 530.4 371 71.7
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 2.1e-148 529.6 331 78.9
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 8.1e-148 527.7 378 69.3
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 1.1e-147 527.3 424 64.2
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 2.4e-147 526.2 421 64.1
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 6.9e-147 524.6 477 59.5
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 9.0e-147 524.2 413 65.6
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 2.6e-146 522.7 358 72.9
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 4.5e-146 521.9 404 65.1
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 7.6e-146 521.2 413 63.7
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.9e-145 519.2 413 63.4
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 3.8e-145 518.8 414 63.3
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 3.8e-145 518.8 420 63.3
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 1.1e-144 517.3 422 64.5
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.4e-144 516.2 414 62.8
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 2.4e-144 516.2 366 71.6
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.2e-144 515.4 413 62.7
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 5.5e-144 515.0 399 65.7
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.2e-143 513.8 414 62.8
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 2.1e-143 513.1 331 76.7
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 1.0e-142 510.8 362 70.4
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 1.0e-142 510.8 362 70.4
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 1.0e-142 510.8 391 66.8
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 1.3e-142 510.4 405 64.7
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 1.3e-142 510.4 366 67.5
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 1.8e-142 510.0 384 67.4
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 2.3e-142 509.6 380 67.9
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 3.0e-142 509.2 405 64.7
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 8.7e-142 507.7 410 64.4
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 1.5e-141 506.9 366 67.5
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 1.5e-141 506.9 388 64.9
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 2.5e-141 506.1 379 66.8
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 7.4e-141 504.6 375 67.2
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 1.6e-140 503.4 357 70.6
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 2.1e-140 503.1 349 71.1
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 2.8e-140 502.7 404 64.6
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 4.8e-140 501.9 360 69.4
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 6.2e-140 501.5 351 71.2
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 1.4e-139 500.4 405 63.7
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 1.4e-139 500.4 405 63.7
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 1.4e-139 500.4 351 70.9
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 2.4e-139 499.6 412 63.1
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 2.4e-139 499.6 365 68.5
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 1.2e-138 497.3 367 66.8
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 2.6e-138 496.1 379 66.5
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 2.6e-138 496.1 381 65.9
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 3.4e-138 495.7 411 61.1
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 4.5e-138 495.4 408 62.5
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 5.8e-138 495.0 368 68.2
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 1.3e-137 493.8 383 65.5
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 1.7e-137 493.4 362 67.7
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 3.8e-137 492.3 383 65.5
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 9.3e-136 487.6 413 62.2
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 1.2e-135 487.3 399 63.2
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 4.6e-135 485.3 414 60.1
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 7.9e-135 484.6 352 68.5
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 1.3e-134 483.8 407 60.4
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 2.3e-134 483.0 384 63.8
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 5.1e-134 481.9 405 63.0
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 5.1e-134 481.9 369 65.0
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 5.1e-134 481.9 369 64.2
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 8.7e-134 481.1 383 62.9
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 1.5e-133 480.3 409 61.1
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 4.3e-133 478.8 414 60.1
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 4.3e-133 478.8 382 64.1
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 5.7e-133 478.4 407 60.2
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 7.4e-133 478.0 380 65.0
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 1.6e-132 476.9 359 69.1
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 1.5e-130 470.3 356 65.4
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 3.2e-128 462.6 331 68.9
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.2e-127 460.7 331 69.2
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 1.6e-127 460.3 333 69.1
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 1.5e-125 453.8 379 59.6
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 4.3e-125 452.2 308 74.0
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 1.8e-118 430.3 376 60.1
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 1.1e-117 427.6 303 69.0
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 1.5e-117 427.2 350 60.6
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 2.2e-116 423.3 328 64.0
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 2.2e-113 413.3 382 57.3
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 2.5e-112 409.8 291 71.5
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.1e-109 401.0 336 59.8
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 5.7e-109 398.7 354 57.3
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 2.2e-108 396.7 413 53.5
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 7.2e-104 381.7 409 52.6
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 8.8e-102 374.8 334 54.5
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 8.8e-102 374.8 343 53.6
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 3.1e-99 366.3 423 49.2
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.7e-98 363.2 337 52.8
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 4.0e-94 349.4 317 53.9
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 8.3e-92 341.7 282 65.2
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 5.7e-85 318.9 298 58.4
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 6.4e-76 288.9 330 49.7
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 5.4e-75 285.8 381 41.2
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 4.3e-72 276.2 312 45.8
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.6e-72 275.8 315 44.8
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 8.9e-70 268.5 326 44.5
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.5e-69 267.7 256 57.0
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.1e-64 251.5 292 43.5
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 7.3e-64 248.8 239 57.7
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 9.5e-64 248.4 296 42.6
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.6e-63 247.7 285 43.5
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 1.1e-62 245.0 254 52.0
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 3.1e-62 243.4 181 63.5
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.8e-62 242.3 305 40.0
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 4.4e-61 239.6 300 41.3
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 5.8e-61 239.2 149 80.5
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.5e-61 238.8 285 42.1
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.2e-58 231.5 298 39.9
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.4e-54 217.2 271 40.6
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 5.8e-53 212.6 162 64.2
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 5.8e-53 212.6 325 38.8
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.3e-49 200.7 187 57.8
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.6e-45 187.2 145 69.7
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.4e-43 181.4 153 53.6
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.4e-43 180.6 314 34.7
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.2e-43 180.3 307 36.2
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.3e-41 174.9 310 32.6
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 1.7e-41 174.5 135 64.4
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 3.0e-41 173.7 233 41.2
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.0e-41 173.7 314 34.1
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 9.9e-37 158.7 345 27.8
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.8e-36 156.8 322 30.4
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.1e-34 151.0 327 28.1
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 8.1e-31 139.0 312 30.4
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.2e-28 131.0 311 28.3
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 3.8e-28 130.2 77 83.1
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 4.9e-28 129.8 159 50.9
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 5.5e-27 126.3 119 52.9
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.1e-27 125.9 128 44.5
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.2e-26 125.2 315 30.8
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 6.7e-25 119.4 341 29.9
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.1e-24 118.6 293 29.7
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 7.4e-24 115.9 100 58.0
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 9.6e-24 115.5 222 29.7
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.8e-23 114.0 312 29.8
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.7e-23 113.6 188 35.1
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 4.0e-22 110.2 316 29.4
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 7.1e-19 99.4 297 28.6
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 4.6e-18 96.7 311 27.7
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 4.8e-15 86.7 352 24.7
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 4.5e-13 80.1 86 57.0
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 9.7e-08 62.4 141 31.2
Pp3c20_3390 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.4e-06 57.8 89 39.3


User provided reference genes

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