Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g37830 Coffea canephora HOM05D007870 ORTHO05D010015 3.2e-24 114.8 81 100.0
PGSC0003DMG400000161 Solanum tuberosum HOM05D007870 ORTHO05D010015 8.3e-17 90.1 81 59.3
TWI23G0891 Tripterygium wilfordii HOM05D007870 ORTHO05D010015 2.4e-16 88.6 82 81.7
Zm00001eb190830 Zea mays HOM05D007870 ORTHO05D010015 3.2e-16 88.2 81 75.3
arahy.Tifrunner.gnm1.ann1.LLY2P5 Arachis hypogaea HOM05D007870 ORTHO05D010015 4.1e-16 87.8 81 64.2
Phvul.010G097100 Phaseolus vulgaris HOM05D007870 ORTHO05D010015 4.1e-16 87.8 81 65.4
Psat4g155360 Pisum sativum HOM05D007870 ORTHO05D010015 4.1e-16 87.8 82 82.9
RcHm_v2.0_Chr1g0354641 Rosa chinensis HOM05D007870 ORTHO05D010015 4.1e-16 87.8 81 80.2
Thecc.01G360900 Theobroma cacao HOM05D007870 ORTHO05D010015 7.0e-16 87.0 83 79.5
arahy.Tifrunner.gnm1.ann1.52J70V Arachis hypogaea HOM05D007870 ORTHO05D010015 1.2e-15 86.3 81 63.0
BolC4t28688H Brassica oleracea HOM05D007870 ORTHO05D010015 1.2e-15 86.3 81 63.0
Thhalv10001707m.g Eutrema salsugineum HOM05D007870 ORTHO05D010015 1.2e-15 86.3 81 63.0
Lalb_Chr10g0097081 Lupinus albus HOM05D007870 ORTHO05D010015 1.2e-15 86.3 83 80.7
unitig_8.g3804 Utricularia gibba HOM05D007870 ORTHO05D010015 1.6e-15 85.9 83 62.7
Sopen01g038280 Solanum pennellii HOM05D007870 ORTHO05D010015 2.0e-15 85.5 82 58.5
Dinv43804 Davidia involucrata HOM05D007870 ORTHO05D010015 2.7e-15 85.1 81 76.5
BcaB02g09002 Brassica carinata HOM05D007870 ORTHO05D010015 3.5e-15 84.7 81 61.7
Carub.0004s2856 Capsella rubella HOM05D007870 ORTHO05D010015 4.6e-15 84.3 81 61.7
DCAR_025186 Daucus carota HOM05D007870 ORTHO05D010015 4.6e-15 84.3 83 60.2
Os02g0824400 Oryza sativa ssp. japonica HOM05D007870 ORTHO05D010015 6.0e-15 84.0 81 61.7
BolC4t22300H Brassica oleracea HOM05D007870 ORTHO05D010015 7.8e-15 83.6 81 66.7
QL08p049047 Quercus lobata HOM05D007870 ORTHO05D010015 1.3e-14 82.8 81 61.7
FvH4_7g13990 Fragaria vesca HOM05D007870 ORTHO05D010015 2.3e-14 82.0 81 70.4
FAN06G1295 Fragaria x ananassa HOM05D007870 ORTHO05D010015 3.0e-14 81.6 81 77.8
Oeu056365.2 Olea europaea HOM05D007870 ORTHO05D010015 3.9e-14 81.3 111 50.5
Lj3g0023390 Lotus japonicus HOM05D007870 ORTHO05D010015 5.0e-14 80.9 79 79.7
Aa31LG10G15580 Aethionema arabicum HOM05D007870 ORTHO05D010015 8.6e-14 80.1 83 60.2
CDE09G0625 Ceratophyllum demersum HOM05D007870 ORTHO05D010015 8.6e-14 80.1 83 67.5
CDE11G0999 Ceratophyllum demersum HOM05D007870 ORTHO05D010015 8.6e-14 80.1 83 73.5
SalBow3G1909 Salvia bowleyana HOM05D007870 ORTHO05D010015 8.6e-14 80.1 83 77.1
FAN03G1806 Fragaria x ananassa HOM05D007870 ORTHO05D010015 2.5e-13 78.6 81 79.0
MD01G1056300 Malus domestica HOM05D007870 ORTHO05D010015 2.5e-13 78.6 81 76.5
Nn6g33472 Nelumbo nucifera HOM05D007870 ORTHO05D010015 3.3e-13 78.2 82 78.0
FAN01G0023 Fragaria x ananassa HOM05D007870 ORTHO05D010015 1.2e-12 76.3 81 77.8
FAN06G2504 Fragaria x ananassa HOM05D007870 ORTHO05D010015 1.2e-12 76.3 81 77.8
vmacro13293 Vaccinium macrocarpon HOM05D007870 ORTHO05D010015 2.1e-12 75.5 84 71.4
vmacro23343 Vaccinium macrocarpon HOM05D007870 ORTHO05D010015 2.1e-12 75.5 84 71.4
HPP92_014735 Vanilla planifolia HOM05D007870 ORTHO05D010015 2.8e-12 75.1 81 60.5
Duzib138G1310 Durio zibethinus HOM05D007870 ORTHO05D010015 1.4e-11 72.8 83 74.7
Manes.05G036400 Manihot esculenta HOM05D007870 ORTHO05D010015 1.2e-10 69.7 82 74.4
BcaC02g07064 Brassica carinata HOM05D007870 ORTHO05D010015 2.6e-10 68.6 81 58.0
C04p71900 Brassica napus HOM05D007870 ORTHO05D010015 2.6e-10 68.6 81 58.0
SalBow1G0457 Salvia bowleyana HOM05D007870 ORTHO05D010015 5.8e-10 67.4 83 71.1
BraA04t18871Z Brassica rapa HOM05D007870 ORTHO05D010015 7.5e-10 67.0 81 55.6
Lalb_Chr04g0256851 Lupinus albus HOM05D007870 ORTHO05D010015 7.5e-10 67.0 83 71.1
TPR.G39935 Trifolium pratense HOM05D007870 ORTHO05D010015 7.5e-10 67.0 82 73.2
AL4G45070 Arabidopsis lyrata HOM05D007870 ORTHO05D010015 9.9e-10 66.6 81 56.8
C04p06780 Brassica napus HOM05D007870 ORTHO05D010015 9.9e-10 66.6 81 64.2
Peaxi162Scf00056g00013 Petunia axillaris HOM05D007870 ORTHO05D010015 1.3e-09 66.2 82 69.5
A04p34100 Brassica napus HOM05D007870 ORTHO05D010015 2.2e-09 65.5 81 55.6
A05p05830 Brassica napus HOM05D007870 ORTHO05D010015 2.2e-09 65.5 81 55.6
PGR031G0106 Punica granatum HOM05D007870 ORTHO05D010015 2.9e-09 65.1 82 70.7
Sp4g27930 Schrenkiella parvula HOM05D007870 ORTHO05D010015 2.9e-09 65.1 81 56.8
MELO3C006117.2 Cucumis melo HOM05D007870 ORTHO05D010015 3.7e-09 64.7 83 53.0
BcaC02g12172 Brassica carinata HOM05D007870 ORTHO05D010015 4.9e-09 64.3 81 69.1
SGA_v2.0_scaffold4G02333 Striga asiatica HOM05D007870 ORTHO05D010015 6.4e-09 63.9 83 69.9
Aqoxy7G00343 Aquilegia oxysepala HOM05D007870 ORTHO05D010015 1.1e-08 63.2 83 68.7
ATR0680G221 Amborella trichopoda HOM05D007870 ORTHO05D010015 1.4e-08 62.8 84 67.9
BraA05t19548Z Brassica rapa HOM05D007870 ORTHO05D010015 1.9e-08 62.4 81 55.6
TAR375G0654 Trochodendron aralioides HOM05D007870 ORTHO05D010015 1.9e-08 62.4 83 69.9
Actinidia10023 Actinidia chinensis HOM05D007870 ORTHO05D010015 5.4e-08 60.8 78 70.5
Medtr8g031040 Medicago truncatula HOM05D007870 ORTHO05D010015 5.4e-08 60.8 83 67.5
Sopen07g023130 Solanum pennellii HOM05D007870 ORTHO05D010015 1.2e-07 59.7 43 74.4
Gorai.004G158100 Gossypium raimondii HOM05D007870 ORTHO05D010015 1.6e-07 59.3 83 67.5
Rhsim07G0016800 Rhododendron simsii HOM05D007870 ORTHO05D010015 4.6e-07 57.8 137 40.9
Glyma.07G072200 Glycine max HOM05D007870 ORTHO05D010015 1.0e-06 56.6 82 47.6
Lsat_1_v5_gn_3_137021 Lactuca sativa HOM05D007870 ORTHO05D010015 1.0e-06 56.6 79 65.8
Potri.014G082300 Populus trichocarpa HOM05D007870 ORTHO05D010015 1.0e-06 56.6 83 67.5
ECA240G2199 Erigeron canadensis HOM05D007870 ORTHO05D010015 2.3e-06 55.5 84 63.1
Cfa018734 Carpinus fangiana HOM05D001677 ORTHO05D001682 8.6e-06 53.5 35 82.9
MBI18_g40941_MAGBIO Magnolia biondii HOM05D007870 ORTHO05D010015 8.6e-06 53.5 83 65.1


User provided reference genes

Program Settings