Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g37710 Coffea canephora HOM05D006991 ORTHO05D009188 0.0e+00 1470.7 717 100.0
Dinv43786 Davidia involucrata HOM05D006991 ORTHO05D009188 1.3e-278 963.0 664 72.6
Nitab4.5_0002160g0070 Nicotiana tabacum HOM05D006991 ORTHO05D009188 1.2e-276 956.4 637 74.1
Nitab4.5_0009210g0040 Nicotiana tabacum HOM05D006991 ORTHO05D009188 4.6e-276 954.5 637 73.8
MSTRG.28216 Avicennia marina HOM05D006991 ORTHO05D009188 9.9e-271 936.8 641 71.0
Peaxi162Scf00020g00011 Petunia axillaris HOM05D006991 ORTHO05D009188 4.9e-270 934.5 659 70.9
PGSC0003DMG400000156 Solanum tuberosum HOM05D006991 ORTHO05D009188 1.4e-269 932.9 638 72.1
Migut.N01431 Erythranthe guttata HOM05D006991 ORTHO05D009188 2.7e-268 928.7 636 70.8
CAN.G78.50 Capsicum annuum HOM05D006991 ORTHO05D009188 7.8e-268 927.2 637 71.4
Sopen01g038120 Solanum pennellii HOM05D006991 ORTHO05D009188 1.1e-266 923.3 638 71.5
SalBow5G3488 Salvia bowleyana HOM05D006991 ORTHO05D009188 8.1e-265 917.1 651 69.1
SalBow5G3803 Salvia bowleyana HOM05D006991 ORTHO05D009188 8.1e-265 917.1 651 69.1
DCAR_015941 Daucus carota HOM05D006991 ORTHO05D009188 2.4e-264 915.6 639 70.3
CSS0011179 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 6.9e-264 914.1 645 70.2
GSVIVG01026850001 Vitis vinifera HOM05D006991 ORTHO05D009188 7.6e-263 910.6 643 69.5
Lj9A581T68 Lonicera japonica HOM05D006991 ORTHO05D009188 1.3e-262 909.8 635 70.1
Solyc01g094330.3 Solanum lycopersicum HOM05D006991 ORTHO05D009188 1.7e-262 909.4 665 68.6
HanXRQChr04g0121651 Helianthus annuus HOM05D006991 ORTHO05D009188 3.5e-260 901.7 634 69.9
SGA_v2.0_scaffold43G16441 Striga asiatica HOM05D006991 ORTHO05D009188 6.0e-260 901.0 636 70.3
FAN03G2057 Fragaria x ananassa HOM05D006991 ORTHO05D009188 8.7e-259 897.1 683 64.4
Rhsim07G0017800 Rhododendron simsii HOM05D006991 ORTHO05D009188 1.1e-258 896.7 674 66.8
Medtr8g031480 Medicago truncatula HOM05D006991 ORTHO05D009188 1.5e-258 896.3 649 68.0
FvH4_7g13830 Fragaria vesca HOM05D006991 ORTHO05D009188 2.5e-258 895.6 632 68.5
TPR.G4402 Trifolium pratense HOM05D006991 ORTHO05D009188 4.3e-258 894.8 652 67.3
Lj3g0006815 Lotus japonicus HOM05D006991 ORTHO05D009188 4.8e-257 891.3 649 68.1
Lsat_1_v5_gn_7_5201 Lactuca sativa HOM05D006991 ORTHO05D009188 6.2e-257 891.0 638 68.7
Ciclev10019238m.g Citrus clementina HOM05D006991 ORTHO05D009188 1.4e-256 889.8 648 67.7
ECA236G3544 Erigeron canadensis HOM05D006991 ORTHO05D009188 5.3e-256 887.9 633 69.2
RcHm_v2.0_Chr1g0354041 Rosa chinensis HOM05D006991 ORTHO05D009188 3.4e-255 885.2 639 66.8
Prupe.2G164100 Prunus persica HOM05D006991 ORTHO05D009188 4.5e-255 884.8 640 67.7
MD01G1054400 Malus domestica HOM05D006991 ORTHO05D009188 5.8e-255 884.4 634 68.0
FAN10G0464 Fragaria x ananassa HOM05D006991 ORTHO05D009188 7.1e-253 877.5 659 65.4
Nn6g33525 Nelumbo nucifera HOM05D006991 ORTHO05D009188 9.3e-253 877.1 647 66.3
FAN06G2381 Fragaria x ananassa HOM05D006991 ORTHO05D009188 2.7e-252 875.5 670 64.3
Glyma.07G073500 Glycine max HOM05D006991 ORTHO05D009188 7.9e-252 874.0 652 66.3
CANSAT56G3382 Cannabis sativa HOM05D006991 ORTHO05D009188 1.8e-251 872.8 641 66.1
TWI23G0867 Tripterygium wilfordii HOM05D006991 ORTHO05D009188 1.8e-251 872.8 644 67.9
Potri.002G157400 Populus trichocarpa HOM05D006991 ORTHO05D009188 2.3e-251 872.5 645 66.5
QL08p049512 Quercus lobata HOM05D006991 ORTHO05D009188 3.9e-251 871.7 645 66.5
Hma1.2p1_0001F.1_g001590 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 5.1e-251 871.3 640 68.3
FAN06G3007 Fragaria x ananassa HOM05D006991 ORTHO05D009188 1.6e-249 866.3 652 65.5
Lalb_Chr04g0256761 Lupinus albus HOM05D006991 ORTHO05D009188 1.6e-249 866.3 648 65.1
FAN01G0340 Fragaria x ananassa HOM05D006991 ORTHO05D009188 2.1e-249 865.9 652 65.5
vmacro13305 Vaccinium macrocarpon HOM05D006991 ORTHO05D009188 2.1e-249 865.9 693 63.6
Haze_15467 Corylus avellana HOM05D006991 ORTHO05D009188 4.8e-249 864.8 644 66.9
CSS0000914 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 5.3e-248 861.3 629 68.2
AUR62004323 Chenopodium quinoa HOM05D006991 ORTHO05D009188 1.5e-247 859.8 641 65.5
Ah.05g176510 Amaranthus hybridus HOM05D006991 ORTHO05D009188 4.5e-247 858.2 643 65.5
VMungo0331G1855 Vigna mungo HOM05D006991 ORTHO05D009188 3.8e-246 855.1 632 67.1
Thecc.01G363100 Theobroma cacao HOM05D006991 ORTHO05D009188 1.6e-244 849.7 638 66.5
Duzib138G0243 Durio zibethinus HOM05D006991 ORTHO05D009188 3.5e-244 848.6 645 65.4
COL.COLO4_12678 Corchorus olitorius HOM05D006991 ORTHO05D009188 2.3e-243 845.9 647 65.5
CDE05G1529 Ceratophyllum demersum HOM05D006991 ORTHO05D009188 4.3e-242 841.6 637 64.7
PSO063G6634 Papaver somniferum HOM05D006991 ORTHO05D009188 2.1e-241 839.3 640 65.5
Sed0028010 Sechium edule HOM05D006991 ORTHO05D009188 6.2e-241 837.8 643 64.2
PGR042G0621 Punica granatum HOM05D006991 ORTHO05D009188 8.2e-241 837.4 638 62.7
Gohir.D07G148700 Gossypium hirsutum HOM05D006991 ORTHO05D009188 1.4e-240 836.6 643 66.1
Cfa003952 Carpinus fangiana HOM05D006991 ORTHO05D009188 2.4e-240 835.9 655 64.9
Gorai.001G170100 Gossypium raimondii HOM05D006991 ORTHO05D009188 5.3e-240 834.7 642 65.7
Atru.chr5.484 Acer truncatum HOM05D006991 ORTHO05D009188 1.5e-239 833.2 605 67.1
ClCG05G001680 Citrullus lanatus HOM05D006991 ORTHO05D009188 4.5e-239 831.6 639 63.8
THA.LOC104801448 Tarenaya hassleriana HOM05D006991 ORTHO05D009188 1.0e-238 830.5 647 64.1
BolC8t52898H Brassica oleracea HOM05D006991 ORTHO05D009188 3.8e-238 828.6 641 64.7
Eucgr.E00177 Eucalyptus grandis HOM05D006991 ORTHO05D009188 3.8e-238 828.6 662 62.7
MELO3C006127.2 Cucumis melo HOM05D006991 ORTHO05D009188 4.2e-237 825.1 642 62.3
Aa31LG1G11140 Aethionema arabicum HOM05D006991 ORTHO05D009188 7.9e-236 820.8 645 63.3
AT1G01770 Arabidopsis thaliana HOM05D006991 ORTHO05D009188 1.3e-235 820.1 633 64.8
Thhalv10007047m.g Eutrema salsugineum HOM05D006991 ORTHO05D009188 1.3e-235 820.1 640 64.1
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 3.9e-235 818.5 642 64.0
BraA09t42261Z Brassica rapa HOM05D006991 ORTHO05D009188 8.7e-235 817.4 643 64.5
AL1G10570 Arabidopsis lyrata HOM05D006991 ORTHO05D009188 1.5e-234 816.6 637 64.4
CsaV3_3G009060 Cucumis sativus L. HOM05D006991 ORTHO05D009188 1.5e-234 816.6 629 63.6
Hund27298 Selenicereus undatus HOM05D006991 ORTHO05D002850 7.4e-234 814.3 641 64.0
Aqoxy5G03423_Aqoxy5G03424 Aquilegia oxysepala HOM05D006991 ORTHO05D009188 3.7e-233 812.0 636 64.5
Sp1g00530 Schrenkiella parvula HOM05D006991 ORTHO05D009188 1.4e-232 810.1 635 64.1
Carub.0001s0044 Capsella rubella HOM05D006991 ORTHO05D009188 3.1e-232 808.9 643 63.0
Cpa.g.sc18.226 Carica papaya HOM05D006991 ORTHO05D009188 7.7e-231 804.3 662 62.2
Gohir.A07G142900 Gossypium hirsutum HOM05D006991 ORTHO05D009188 1.1e-229 800.4 646 63.0
ATR0680G083 Amborella trichopoda HOM05D006991 ORTHO05D009188 7.2e-229 797.7 640 61.6
Sc26g0001000 Simmondsia chinensis HOM05D006991 ORTHO05D009188 1.2e-228 797.0 634 63.7
Os07g0457300 Oryza sativa ssp. japonica HOM05D006991 ORTHO05D009188 3.7e-225 785.4 640 61.7
Psat4g154080 Pisum sativum HOM05D006991 ORTHO05D009188 5.3e-224 781.6 582 65.6
Zm00001eb306550 Zea mays HOM05D006991 ORTHO05D009188 1.0e-219 767.3 646 60.4
unitig_748.g7107 Utricularia gibba HOM05D006991 ORTHO05D009188 2.0e-218 763.1 615 63.6
EL10Ac1g00536 Beta vulgaris HOM05D006991 ORTHO05D009188 2.6e-218 762.7 646 60.2
HPP92_004979 Vanilla planifolia HOM05D006991 ORTHO05D009188 5.7e-218 761.5 634 60.7
Hma1.2p1_0001F.1_g001600 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 2.5e-205 719.5 492 72.4
arahy.Tifrunner.gnm1.ann1.NT7Z8Q Arachis hypogaea HOM05D006991 ORTHO05D009188 7.2e-205 718.0 644 58.7
Actinidia10005 Actinidia chinensis HOM05D006991 ORTHO05D009188 8.8e-203 711.1 568 64.3
CiPaw.02G028700 Carya illinoinensis HOM05D006991 ORTHO05D009188 2.4e-192 676.4 454 71.4
Pp3c9_2540 Physcomitrium patens HOM05D006991 ORTHO05D009188 7.0e-184 648.3 621 53.8
SMO164G0214 Selaginella moellendorffii HOM05D006991 ORTHO05D009188 1.4e-179 634.0 622 52.9
arahy.Tifrunner.gnm1.ann1.JH251T Arachis hypogaea HOM05D006991 ORTHO05D009188 4.9e-177 625.5 640 52.8
Ca_23659_v3 Cicer arietinum L. HOM05D006991 ORTHO05D009188 1.1e-163 581.3 629 50.2
MBI18_g09765_MAGBIO Magnolia biondii HOM05D006991 ORTHO05D009188 1.2e-156 557.8 502 57.4
Phvul.010G096000 Phaseolus vulgaris HOM05D006991 ORTHO05D009188 7.6e-154 548.5 358 72.9
CARHR000550 Cardamine hirsuta HOM05D006991 ORTHO05D009188 1.9e-152 543.9 428 63.3
Manes.01G259800 Manihot esculenta HOM05D006991 ORTHO05D009188 6.9e-139 498.8 337 70.9
TAR375G0043 Trochodendron aralioides HOM05D006991 ORTHO05D009188 4.2e-136 489.6 328 71.6
AagrBONN_evm.TU.Sc2ySwM_344.4948 Anthoceros agrestis HOM05D006991 ORTHO05D009188 6.9e-131 472.2 467 51.8
RcHm_v2.0_Chr1g0354021 Rosa chinensis HOM05D006991 ORTHO05D009188 3.9e-102 376.7 411 50.4
EL10Ac1g02136 Beta vulgaris HOM05D006991 ORTHO05D009188 7.5e-77 292.7 267 54.7
Sabra02G0125100 Salix brachista HOM05D006991 ORTHO05D009188 5.2e-70 270.0 191 66.5
HanXRQChr01g0021681 Helianthus annuus HOM05D006991 ORTHO05D009188 1.7e-68 265.0 202 65.8
EL10Ac3g06779 Beta vulgaris HOM05D006991 ORTHO05D009188 2.1e-63 248.1 175 63.4
AUR62033321 Chenopodium quinoa HOM05D006991 ORTHO05D028457 5.4e-51 206.8 176 60.2
Ca_23662_v3 Cicer arietinum L. HOM05D006991 ORTHO05D028457 4.6e-50 203.8 177 59.3
QL09p021383 Quercus lobata HOM05D006991 ORTHO05D009188 1.3e-49 202.2 164 59.1
EL10Ac5g11247 Beta vulgaris HOM05D006991 ORTHO05D009188 3.3e-48 197.6 190 52.1
AUR62003727 Chenopodium quinoa HOM05D001417 ORTHO05D001496 4.9e-44 183.7 127 69.3
PSO782G3099 Papaver somniferum HOM05D006991 ORTHO05D028457 2.2e-36 158.3 173 47.4
HanXRQChr03g0092981 Helianthus annuus HOM05D006991 ORTHO05D226355 7.8e-34 149.8 112 64.3
HanXRQChr01g0025441 Helianthus annuus HOM05D006991 ORTHO05D009188 7.3e-32 143.3 74 86.5
CAN.G1527.6 Capsicum annuum HOM05D006991 ORTHO05D028457 2.8e-31 141.4 102 64.7
CAN.G226.8 Capsicum annuum HOM05D006991 ORTHO05D000001 2.7e-26 124.8 64 89.1
AUR62036784 Chenopodium quinoa HOM05D006991 ORTHO05D138340 4.5e-21 107.5 84 58.3


User provided reference genes

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