Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g37230 Coffea canephora HOM05D006418 ORTHO05D008063 1.2e-202 709.5 340 100.0
TAR375G0873 Trochodendron aralioides HOM05D006418 ORTHO05D008063 2.0e-160 569.3 336 80.1
Ciclev10021113m.g Citrus clementina HOM05D006418 ORTHO05D008063 2.4e-158 562.4 338 79.6
PGSC0003DMG400017054 Solanum tuberosum HOM05D006418 ORTHO05D008063 5.3e-158 561.2 338 78.7
Solyc01g091780.4 Solanum lycopersicum HOM05D006418 ORTHO05D008063 7.0e-158 560.8 340 79.1
Sopen01g037560 Solanum pennellii HOM05D006418 ORTHO05D008063 9.1e-158 560.5 340 79.1
Nitab4.5_0010430g0060 Nicotiana tabacum HOM05D006418 ORTHO05D008063 1.6e-157 559.7 339 78.2
COL.COLO4_12625 Corchorus olitorius HOM05D006418 ORTHO05D008063 2.0e-157 559.3 334 79.6
Rhsim07G0021100 Rhododendron simsii HOM05D006418 ORTHO05D008063 2.7e-157 558.9 335 80.0
vmacro13338 Vaccinium macrocarpon HOM05D006418 ORTHO05D008063 3.5e-157 558.5 298 86.9
Duzib138G1515 Durio zibethinus HOM05D006418 ORTHO05D008063 4.5e-157 558.1 334 79.3
HanXRQChr06g0169031 Helianthus annuus HOM05D006418 ORTHO05D008063 4.5e-157 558.1 334 79.0
CAN.G170.50 Capsicum annuum HOM05D006418 ORTHO05D008063 1.0e-156 557.0 330 80.0
Actinidia38288 Actinidia chinensis HOM05D006418 ORTHO05D008063 2.2e-156 555.8 333 79.9
Nn1g01350 Nelumbo nucifera HOM05D006418 ORTHO05D008063 2.9e-156 555.4 336 78.0
FvH4_7g13130 Fragaria vesca HOM05D006418 ORTHO05D008063 6.5e-156 554.3 334 77.8
FAN06G0540 Fragaria x ananassa HOM05D006418 ORTHO05D008063 6.5e-156 554.3 334 77.8
FAN06G3976 Fragaria x ananassa HOM05D006418 ORTHO05D008063 6.5e-156 554.3 334 77.8
arahy.Tifrunner.gnm1.ann1.K1NG1D Arachis hypogaea HOM05D006418 ORTHO05D008063 8.5e-156 553.9 335 78.8
THA.LOC104827683 Tarenaya hassleriana HOM05D006418 ORTHO05D008063 1.1e-155 553.5 341 77.4
Aqoxy5G03975 Aquilegia oxysepala HOM05D006418 ORTHO05D008063 1.9e-155 552.7 334 77.5
FAN01G2003 Fragaria x ananassa HOM05D006418 ORTHO05D008063 4.2e-155 551.6 334 77.2
FAN10G2923 Fragaria x ananassa HOM05D006418 ORTHO05D008063 4.2e-155 551.6 334 77.5
GSVIVG01027527001 Vitis vinifera HOM05D006418 ORTHO05D008063 4.2e-155 551.6 328 80.2
RcHm_v2.0_Chr1g0352261 Rosa chinensis HOM05D006418 ORTHO05D008063 5.5e-155 551.2 334 77.5
Migut.B01688 Erythranthe guttata HOM05D006418 ORTHO05D008063 7.2e-155 550.8 333 79.3
FAN03G2411 Fragaria x ananassa HOM05D006418 ORTHO05D008063 1.6e-154 549.7 334 77.2
Glyma.03G017600 Glycine max HOM05D006418 ORTHO05D008063 1.6e-154 549.7 335 78.2
CANSAT56G2190 Cannabis sativa HOM05D006418 ORTHO05D008063 2.1e-154 549.3 335 77.3
MD07G1128500 Malus domestica HOM05D006418 ORTHO05D008063 2.1e-154 549.3 336 78.0
CSS0035566 Camellia sinensis var. sinensis HOM05D006418 ORTHO05D008063 2.7e-154 548.9 306 83.3
Dinv32422 Davidia involucrata HOM05D006418 ORTHO05D008063 3.6e-154 548.5 295 85.8
TWI59G1449 Tripterygium wilfordii HOM05D006418 ORTHO05D008063 3.6e-154 548.5 302 84.4
CiPaw.01G053600 Carya illinoinensis HOM05D006418 ORTHO05D008063 8.0e-154 547.4 334 77.8
Gorai.007G095100 Gossypium raimondii HOM05D006418 ORTHO05D008063 1.4e-153 546.6 335 77.6
Lj7A519G38 Lonicera japonica HOM05D006418 ORTHO05D008063 3.0e-153 545.4 300 83.7
Potri.002G153100 Populus trichocarpa HOM05D006418 ORTHO05D008063 3.0e-153 545.4 332 78.0
Hund27325 Selenicereus undatus HOM05D006418 ORTHO05D008063 4.0e-153 545.0 334 76.9
Lj3g0006580 Lotus japonicus HOM05D006418 ORTHO05D008063 5.2e-153 544.7 330 77.9
Nitab4.5_0004550g0130 Nicotiana tabacum HOM05D006418 ORTHO05D008063 5.2e-153 544.7 351 74.9
Sabra02G0121400 Salix brachista HOM05D006418 ORTHO05D008063 5.2e-153 544.7 307 81.4
Hma1.2p1_0033F.1_g020630 Hydrangea macrophylla HOM05D006418 ORTHO05D008063 6.8e-153 544.3 297 84.8
Gohir.D11G089100 Gossypium hirsutum HOM05D006418 ORTHO05D008063 1.2e-152 543.5 335 77.3
Peaxi162Scf00021g00525 Petunia axillaris HOM05D006418 ORTHO05D008063 1.2e-152 543.5 298 83.9
TPR.G17586 Trifolium pratense HOM05D006418 ORTHO05D008063 3.4e-152 542.0 335 76.4
ECA236G1148 Erigeron canadensis HOM05D006418 ORTHO05D008063 7.5e-152 540.8 300 83.3
Eucgr.E00217 Eucalyptus grandis HOM05D006418 ORTHO05D008063 7.5e-152 540.8 335 76.1
EL10Ac1g00963 Beta vulgaris HOM05D006418 ORTHO05D008063 2.7e-149 532.3 328 76.2
Cfa004182 Carpinus fangiana HOM05D006418 ORTHO05D008063 3.5e-149 531.9 295 83.7
Lalb_Chr10g0097531 Lupinus albus HOM05D006418 ORTHO05D008063 3.5e-149 531.9 323 76.8
Aa31LG10G15180 Aethionema arabicum HOM05D006418 ORTHO05D008063 7.7e-149 530.8 338 75.4
PGR042G1311 Punica granatum HOM05D006418 ORTHO05D008063 7.7e-149 530.8 337 77.2
Medtr8g032700 Medicago truncatula HOM05D006418 ORTHO05D008063 1.0e-148 530.4 308 81.2
DCAR_025170 Daucus carota HOM05D006418 ORTHO05D008063 1.3e-148 530.0 303 81.8
Ca_23755_v3 Cicer arietinum L. HOM05D006418 ORTHO05D008063 1.1e-147 526.9 308 79.9
ClCG05G001910 Citrullus lanatus HOM05D006418 ORTHO05D008063 7.2e-147 524.2 321 77.3
CiPaw.01G023800 Carya illinoinensis HOM05D006418 ORTHO05D008063 1.6e-146 523.1 336 74.4
Thhalv10006098m.g Eutrema salsugineum HOM05D006418 ORTHO05D008063 8.0e-146 520.8 299 81.3
CARHR171390 Cardamine hirsuta HOM05D006418 ORTHO05D008063 1.0e-145 520.4 299 81.6
VMungo0331G0376 Vigna mungo HOM05D006418 ORTHO05D008063 1.4e-145 520.0 332 75.3
AT3G61080 Arabidopsis thaliana HOM05D006418 ORTHO05D008063 1.8e-145 519.6 308 78.6
AL5G43290 Arabidopsis lyrata HOM05D006418 ORTHO05D008063 4.0e-145 518.5 302 79.8
Carub.0005s2773 Capsella rubella HOM05D006418 ORTHO05D008063 2.6e-144 515.8 299 80.9
ATR0757G200 Amborella trichopoda HOM05D006418 ORTHO05D008063 9.8e-144 513.8 335 72.2
Phvul.010G092700 Phaseolus vulgaris HOM05D006418 ORTHO05D008063 3.7e-143 511.9 310 77.4
PSO063G7157 Papaver somniferum HOM05D006418 ORTHO05D008063 4.9e-143 511.5 340 72.6
Sp5g02280 Schrenkiella parvula HOM05D006418 ORTHO05D008063 6.3e-143 511.1 310 77.7
Os03g0117800 Oryza sativa ssp. japonica HOM05D006418 ORTHO05D008063 2.0e-141 506.1 343 70.3
Zm00001eb001200 Zea mays HOM05D006418 ORTHO05D008063 2.0e-141 506.1 295 78.3
BcaC08g45098 Brassica carinata HOM05D006418 ORTHO05D008063 1.0e-140 503.8 302 78.5
BcaB02g07390 Brassica carinata HOM05D006418 ORTHO05D008063 1.7e-140 503.1 302 78.1
MELO3C006151.2 Cucumis melo HOM05D006418 ORTHO05D008063 3.3e-139 498.8 365 68.2
SalBow3G2367 Salvia bowleyana HOM05D006418 ORTHO05D008063 3.3e-139 498.8 329 73.9
HPP92_014577 Vanilla planifolia HOM05D006418 ORTHO05D008063 3.3e-139 498.8 328 71.3
C06p27060 Brassica napus HOM05D006418 ORTHO05D008063 1.2e-138 496.9 309 76.7
BolC6t37878H Brassica oleracea HOM05D006418 ORTHO05D008063 1.2e-138 496.9 309 76.7
A07p25300 Brassica napus HOM05D006418 ORTHO05D008063 1.4e-137 493.4 309 76.1
BraA07t30173Z Brassica rapa HOM05D006418 ORTHO05D008063 5.2e-137 491.5 309 75.4
Manes.01G262400 Manihot esculenta HOM05D006418 ORTHO05D008063 4.6e-133 478.4 287 78.0
Thecc.01G368600 Theobroma cacao HOM05D006418 ORTHO05D008063 7.5e-128 461.1 291 74.2
Atru.chr5.403 Acer truncatum HOM05D006418 ORTHO05D008063 2.2e-127 459.5 278 77.3
Oeu024416.1 Olea europaea HOM05D006418 ORTHO05D008063 2.4e-126 456.1 299 74.9
SGA_v2.0_scaffold95G28870 Striga asiatica HOM05D006418 ORTHO05D008063 3.0e-124 449.1 348 67.2
CDE01G0065 Ceratophyllum demersum HOM05D006418 ORTHO05D008063 2.5e-123 446.0 268 76.5
Psat4g151800 Pisum sativum HOM05D006418 ORTHO05D008063 2.1e-122 443.0 259 78.4
Prupe.2G154600 Prunus persica HOM05D006418 ORTHO05D008063 2.1e-122 443.0 241 83.4
AUR62004291 Chenopodium quinoa HOM05D006418 ORTHO05D008063 3.1e-121 439.1 252 79.4
CsaV3_3G009310 Cucumis sativus L. HOM05D006418 ORTHO05D008063 4.0e-121 438.7 241 83.8
Mapoly0138s0005 Marchantia polymorpha HOM05D006418 ORTHO05D008063 2.6e-120 436.0 317 65.3
CBR_g38943 Chara braunii HOM05D006418 ORTHO05D008063 9.9e-120 434.1 293 67.2
AagrBONN_evm.TU.Sc2ySwM_344.2134 Anthoceros agrestis HOM05D006418 ORTHO05D008063 2.9e-119 432.6 289 67.8
Lsat_1_v5_gn_7_8501 Lactuca sativa HOM05D006418 ORTHO05D008063 2.9e-119 432.6 263 77.2
Sed0024588 Sechium edule HOM05D006418 ORTHO05D008063 7.1e-118 427.9 241 81.7
Pp3c15_5030 Physcomitrium patens HOM05D006418 ORTHO05D008063 1.3e-116 423.7 333 60.4
QL08p050652 Quercus lobata HOM05D006418 ORTHO05D008063 8.6e-116 421.0 262 76.0
Cc02_g37660 Coffea canephora HOM05D006418 ORTHO05D008063 6.8e-113 411.4 208 93.3
SMO356G0133 Selaginella moellendorffii HOM05D006418 ORTHO05D008063 3.8e-111 405.6 287 65.5
Cpa.g.sc18.197 Carica papaya HOM05D006418 ORTHO05D008063 1.0e-108 397.5 254 74.4
unitig_22.g5367 Utricularia gibba HOM05D006418 ORTHO05D008063 2.5e-99 366.3 204 81.4
MBI12_g25033_MAGBIO Magnolia biondii HOM05D006418 ORTHO05D008063 5.3e-97 358.6 268 65.3
Gohir.A11G085000 Gossypium hirsutum HOM05D006418 ORTHO05D008063 1.5e-91 340.5 182 83.5
Hma1.2p1_0033F.1_g020640 Hydrangea macrophylla HOM05D006418 ORTHO05D008063 4.8e-90 335.5 236 71.2
SEGI_14549 Sequoiadendron giganteum HOM05D006418 ORTHO05D008063 4.5e-72 275.8 170 73.5
MCO14G366 Micromonas commoda HOM05D006418 ORTHO05D008063 2.2e-71 273.5 296 49.7
Cre12.g542202 Chlamydomonas reinhardtii HOM05D006418 ORTHO05D008063 1.4e-70 270.8 286 50.3
Sc26g0001060 Simmondsia chinensis HOM05D001335 ORTHO05D001184 2.4e-65 253.4 189 65.6
arahy.Tifrunner.gnm1.ann1.N7AMXP Arachis hypogaea HOM05D006418 ORTHO05D008063 1.9e-62 243.8 173 71.1
FAN10G0301 Fragaria x ananassa HOM05D006418 ORTHO05D008063 2.5e-62 243.4 213 59.6
Haze_15226 Corylus avellana HOM05D006418 ORTHO05D008063 3.0e-60 236.5 138 80.4
PRCOL_00000121 Prasinoderma coloniale HOM05D006418 ORTHO05D008063 1.3e-55 221.1 298 41.9
Sabra14G0055300 Salix brachista HOM05D006418 ORTHO05D008063 3.2e-46 189.9 287 41.1
Pp3c1_6480 Physcomitrium patens HOM05D006418 ORTHO05D008063 4.2e-46 189.5 277 39.0
Gohir.A11G084900 Gossypium hirsutum HOM05D006418 ORTHO05D008063 2.1e-45 187.2 134 68.7
Glyma.07G078900 Glycine max HOM05D006418 ORTHO05D008063 1.8e-44 184.1 189 57.1
Sc26g0001070 Simmondsia chinensis HOM05D006418 ORTHO05D008063 6.3e-42 175.6 137 65.7
Ca_28970_v3 Cicer arietinum L. HOM05D006418 ORTHO05D008063 7.5e-35 152.1 286 35.0
Cfa024407 Carpinus fangiana HOM05D006418 ORTHO05D008063 5.0e-31 139.4 279 33.7
ATR0620G127 Amborella trichopoda HOM05D006418 ORTHO05D008063 4.0e-28 129.8 157 43.3
unitig_22.g5366 Utricularia gibba HOM05D003447 ORTHO05D003967 4.3e-22 109.8 96 63.5
CiPaw.01G052800 Carya illinoinensis HOM05D006418 ORTHO05D008063 2.1e-21 107.5 88 61.4
Cc00_g22860 Coffea canephora HOM05D006418 ORTHO05D008063 1.5e-19 101.3 57 86.0
SEGI_36912 Sequoiadendron giganteum HOM05D006418 ORTHO05D008063 1.1e-12 78.6 54 61.1
Actinidia27830 Actinidia chinensis HOM05D006418 ORTHO05D008063 4.9e-10 69.7 41 78.0
MBI16_g15528_MAGBIO Magnolia biondii HOM05D006418 ORTHO05D008063 4.1e-09 66.6 42 71.4


User provided reference genes

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