Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g36880 Coffea canephora HOM05D002804 ORTHO05D003755 1.9e-139 499.6 331 100.0
Nitab4.5_0004889g0010 Nicotiana tabacum HOM05D002804 ORTHO05D003755 2.3e-73 280.0 330 53.9
Sopen01g044910 Solanum pennellii HOM05D002804 ORTHO05D003755 1.0e-68 264.6 330 51.8
PGSC0003DMG400018230 Solanum tuberosum HOM05D002804 ORTHO05D003755 2.2e-68 263.5 331 61.6
CAN.G1379.37 Capsicum annuum HOM05D002804 ORTHO05D003755 5.0e-68 262.3 329 62.0
Solyc01g102470.2 Solanum lycopersicum HOM05D002804 ORTHO05D003755 6.5e-68 261.9 330 51.8
Nitab4.5_0004090g0070 Nicotiana tabacum HOM05D002804 ORTHO05D003755 8.0e-66 255.0 326 52.1
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 2.7e-61 240.0 321 47.4
Peaxi162Scf00194g00625 Petunia axillaris HOM05D002804 ORTHO05D003755 2.9e-60 236.5 319 49.2
MSTRG.5178 Avicennia marina HOM05D002804 ORTHO05D003755 4.0e-57 226.1 334 49.1
Lj5A312T57 Lonicera japonica HOM05D002804 ORTHO05D003755 7.7e-53 211.8 265 53.2
Oeu029180.1 Olea europaea HOM05D002804 ORTHO05D003755 5.6e-51 205.7 338 45.6
unitig_22.g5757 Utricularia gibba HOM05D002804 ORTHO05D003755 1.4e-46 191.0 256 48.0
Dinv30965 Davidia involucrata HOM05D002804 ORTHO05D003755 4.1e-46 189.5 213 52.6
Migut.N00995 Erythranthe guttata HOM05D002804 ORTHO05D003755 2.0e-45 187.2 335 48.7
Rhsim11G0111400 Rhododendron simsii HOM05D002962 ORTHO05D003280 3.9e-44 183.0 268 57.8
Lsat_1_v5_gn_9_84161 Lactuca sativa HOM05D002804 ORTHO05D003755 2.5e-43 180.3 310 50.6
Thecc.08G200300 Theobroma cacao HOM05D002804 ORTHO05D003755 3.6e-42 176.4 325 40.6
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 4.7e-42 176.0 241 48.5
Duzib116G0715 Durio zibethinus HOM05D002804 ORTHO05D003755 8.0e-42 175.3 311 53.7
SGA_v2.0_scaffold658G53387 Striga asiatica HOM05D002804 ORTHO05D003755 1.4e-41 174.5 253 66.0
Lalb_Chr02g0147321 Lupinus albus HOM05D002804 ORTHO05D003755 6.8e-41 172.2 329 40.1
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 7.5e-40 168.7 334 39.5
Gorai.006G131500 Gossypium raimondii HOM05D002804 ORTHO05D003755 1.3e-39 167.9 263 58.2
Gohir.D09G113800 Gossypium hirsutum HOM05D002804 ORTHO05D003755 1.7e-39 167.5 263 58.2
HanXRQChr07g0193711 Helianthus annuus HOM05D002804 ORTHO05D003755 4.9e-39 166.0 241 60.6
Gohir.A09G116900 Gossypium hirsutum HOM05D002804 ORTHO05D003755 6.4e-39 165.6 322 38.8
MD04G1183300 Malus domestica HOM05D002804 ORTHO05D003755 1.4e-38 164.5 241 57.7
Actinidia17724 Actinidia chinensis HOM05D002804 ORTHO05D003755 2.7e-37 160.2 328 50.0
ECA236G4290 Erigeron canadensis HOM05D002804 ORTHO05D003755 1.0e-36 158.3 248 54.8
Prupe.6G301800 Prunus persica HOM05D002804 ORTHO05D003755 6.6e-36 155.6 213 61.0
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 8.6e-36 155.2 297 42.8
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 1.5e-35 154.5 206 44.2
VMungo0720G2485 Vigna mungo HOM05D002804 ORTHO05D003755 1.5e-35 154.5 309 38.2
QL03p011442 Quercus lobata HOM05D002804 ORTHO05D003755 3.3e-35 153.3 212 50.5
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 4.3e-35 152.9 247 39.3
Phvul.007G207300 Phaseolus vulgaris HOM05D002804 ORTHO05D003755 7.3e-35 152.1 334 40.4
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 2.8e-34 150.2 250 39.2
Carub.0006s0240 Capsella rubella HOM05D002804 ORTHO05D003755 4.7e-34 149.4 247 51.4
Atru.chr12.1496 Acer truncatum HOM05D002804 ORTHO05D003755 6.2e-34 149.1 243 45.3
Medtr1g085280 Medicago truncatula HOM05D002804 ORTHO05D003755 1.8e-33 147.5 295 35.9
AT5G03560 Arabidopsis thaliana HOM05D002804 ORTHO05D003755 8.9e-33 145.2 242 47.9
PGR119G1767 Punica granatum HOM05D002804 ORTHO05D003755 1.5e-32 144.4 242 41.3
Aa31LG1G21630 Aethionema arabicum HOM05D007539 ORTHO05D009315 2.0e-32 144.1 241 42.3
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 7.5e-32 142.1 297 34.7
Glyma.20G089500 Glycine max HOM05D002804 ORTHO05D003755 9.8e-32 141.7 288 35.1
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.7e-31 139.8 206 40.8
SalBow4G0464 Salvia bowleyana HOM05D002804 ORTHO05D003755 3.7e-31 139.8 259 53.7
TAR636G2693 Trochodendron aralioides HOM05D002804 ORTHO05D003755 1.2e-29 134.8 93 69.9
Zm00001eb429950 Zea mays HOM05D002804 ORTHO05D003755 1.6e-29 134.4 210 45.7
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.7e-29 133.7 123 57.7
Manes.04G038100 Manihot esculenta HOM05D002804 ORTHO05D003755 1.7e-28 131.0 91 67.0
FAN02G1170 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.3e-28 130.6 206 45.1
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 3.0e-28 130.2 204 52.5
THA.LOC104826924 Tarenaya hassleriana HOM05D002804 ORTHO05D003755 3.9e-28 129.8 247 49.8
Peaxi162Scf01065g00002 Petunia axillaris HOM05D002804 ORTHO05D003755 1.5e-27 127.9 140 49.3
DCAR_003256 Daucus carota HOM05D002804 ORTHO05D003755 4.3e-27 126.3 165 44.2
PSO170G1624 Papaver somniferum HOM05D002804 ORTHO05D003755 4.3e-27 126.3 88 72.7
CSS0047980 Camellia sinensis var. sinensis HOM05D002804 ORTHO05D003755 7.3e-27 125.6 328 48.8
EL10Ac6g13418 Beta vulgaris HOM05D002804 ORTHO05D003755 3.6e-26 123.2 318 44.3
ATR0693G165 Amborella trichopoda HOM05D002804 ORTHO05D003755 4.7e-26 122.9 209 47.4
Nn5g27913 Nelumbo nucifera HOM05D002804 ORTHO05D003755 4.7e-26 122.9 88 67.0
Ah.02g130510 Amaranthus hybridus HOM05D002804 ORTHO05D003755 6.2e-26 122.5 321 44.9
Lj5A49T37 Lonicera japonica HOM05D002804 ORTHO05D003755 1.8e-25 120.9 211 46.0
PSO357G0404 Papaver somniferum HOM05D002804 ORTHO05D003755 2.3e-25 120.6 204 42.2
MD12G1196700 Malus domestica HOM05D002804 ORTHO05D003755 9.9e-24 115.2 177 59.9
Sc14g0008950 Simmondsia chinensis HOM05D002804 ORTHO05D003755 1.3e-23 114.8 256 33.2
CSS0012453 Camellia sinensis var. sinensis HOM05D002804 ORTHO05D003755 1.7e-23 114.4 329 47.1
Sabra13G0000100 Salix brachista HOM05D002804 ORTHO05D003755 2.9e-23 113.6 123 52.8
Psat6g157320 Pisum sativum HOM05D002804 ORTHO05D003755 4.9e-23 112.8 175 40.0
Sed0019381 Sechium edule HOM05D002804 ORTHO05D003755 8.4e-23 112.1 288 35.4
HPP92_022010 Vanilla planifolia HOM05D002804 ORTHO05D003755 3.5e-21 106.7 85 75.3
RcHm_v2.0_Chr3g0459161 Rosa chinensis HOM05D002804 ORTHO05D003755 6.0e-21 105.9 208 32.7
Ca_10220_v3 Cicer arietinum L. HOM05D002804 ORTHO05D003755 3.9e-20 103.2 175 36.6
CiPaw.04G013600 Carya illinoinensis HOM05D002804 ORTHO05D003755 1.2e-18 98.2 198 40.9
FAN14G5607 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.6e-18 97.8 208 30.8
FvH4_6g08870 Fragaria vesca HOM05D002804 ORTHO05D003755 2.1e-18 97.4 208 30.8
Aqoxy1G02792 Aquilegia oxysepala HOM05D002804 ORTHO05D003755 3.6e-18 96.7 161 39.1
FAN05G2457 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.1e-17 95.1 207 29.5
SEGI_29468 Sequoiadendron giganteum HOM05D002804 ORTHO05D003755 8.9e-17 92.0 213 43.2
FAN02G0182 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.9e-15 87.0 204 28.4
FvH4_6g08940 Fragaria vesca HOM05D002804 ORTHO05D003755 1.4e-14 84.7 212 26.9
FAN02G4619 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.4e-14 84.0 212 26.4
FAN05G3459 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.5e-13 80.1 211 26.1
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 6.0e-13 79.3 176 32.4
Cfa009693 Carpinus fangiana HOM05D002804 ORTHO05D003755 1.7e-12 77.8 180 32.8
Nitab4.5_0004668g0040 Nicotiana tabacum HOM05D002804 ORTHO05D003755 3.9e-12 76.6 277 28.9
AUR62005554 Chenopodium quinoa HOM05D002804 ORTHO05D003755 1.5e-11 74.7 83 60.2
MD16G1177800 Malus domestica HOM05D002804 ORTHO05D003755 1.9e-11 74.3 186 30.1
COL.COLO4_05836 Corchorus olitorius HOM05D002804 ORTHO05D003755 3.3e-11 73.6 259 30.5
RcHm_v2.0_Chr3g0459221 Rosa chinensis HOM05D002804 ORTHO05D003755 3.6e-10 70.1 212 26.4
AUR62024179 Chenopodium quinoa HOM05D002804 ORTHO05D003755 2.4e-09 67.4 59 54.2
RcHm_v2.0_Chr3g0459171 Rosa chinensis HOM05D002804 ORTHO05D003755 5.3e-09 66.2 220 26.8
FAN04G1488 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.5e-08 64.7 185 27.0
Sc14g0008930 Simmondsia chinensis HOM05D002804 ORTHO05D003755 1.5e-08 64.7 42 69.0
FvH4_7g08991 Fragaria vesca HOM05D002804 ORTHO05D003755 5.8e-08 62.8 195 26.2
FAN06G4842 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.8e-08 62.8 195 26.2
FAN08G1215 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.6e-08 62.4 192 26.6
RcHm_v2.0_Chr7g0236071 Rosa chinensis HOM05D002804 ORTHO05D003755 1.3e-07 61.6 190 27.9
FAN14G4263 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.4e-07 59.3 203 24.1
MD16G1193600 Malus domestica HOM05D002804 ORTHO05D003755 8.4e-07 58.9 191 25.1
FAN08G2676 Fragaria x ananassa HOM05D002804 ORTHO05D025426 7.1e-06 55.8 190 24.2


User provided reference genes

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