Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g36870 Coffea canephora HOM05D007316 ORTHO05D009393 8.1e-31 136.3 65 100.0
Manes.17G057300 Manihot esculenta HOM05D007316 ORTHO05D009393 9.6e-24 112.8 65 84.6
Psat3g015560 Pisum sativum HOM05D007316 ORTHO05D009393 3.7e-23 110.9 60 86.7
Ca_09261_v3 Cicer arietinum L. HOM05D007316 ORTHO05D009393 6.2e-23 110.2 60 88.3
GSVIVG01029768001 Vitis vinifera HOM05D007316 ORTHO05D009393 6.2e-23 110.2 62 87.1
CSS0014503 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.4e-22 109.0 62 83.9
CSS0021979 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.4e-22 109.0 62 83.9
Duzib128G0483 Durio zibethinus HOM05D007316 ORTHO05D009393 1.4e-22 109.0 65 81.5
Hma1.2p1_0157F.1_g069460 Hydrangea macrophylla HOM05D007316 ORTHO05D009393 1.4e-22 109.0 65 83.1
QL09p015786 Quercus lobata HOM05D007316 ORTHO05D009393 1.4e-22 109.0 62 87.1
QL09p023249 Quercus lobata HOM05D007316 ORTHO05D009393 1.4e-22 109.0 62 87.1
CANSAT56G2903 Cannabis sativa HOM05D007316 ORTHO05D009393 1.8e-22 108.6 65 84.6
Phvul.001G220400 Phaseolus vulgaris HOM05D007316 ORTHO05D009393 2.4e-22 108.2 65 83.1
Cpa.g.sc233.10 Carica papaya HOM05D007316 ORTHO05D009393 3.1e-22 107.8 65 81.5
THA.LOC104813939 Tarenaya hassleriana HOM05D007316 ORTHO05D009393 3.1e-22 107.8 61 85.2
Thecc.05G261200 Theobroma cacao HOM05D007316 ORTHO05D009393 5.3e-22 107.1 65 81.5
FvH4_4g00490 Fragaria vesca HOM05D007316 ORTHO05D009393 6.9e-22 106.7 65 78.5
FAN12G3999 Fragaria x ananassa HOM05D007316 ORTHO05D009393 6.9e-22 106.7 65 78.5
FAN17G1024 Fragaria x ananassa HOM05D007316 ORTHO05D009393 6.9e-22 106.7 65 78.5
FAN22G1131 Fragaria x ananassa HOM05D007316 ORTHO05D009393 6.9e-22 106.7 65 78.5
Glyma.03G226500 Glycine max HOM05D007316 ORTHO05D009393 6.9e-22 106.7 65 81.5
Medtr7g111090 Medicago truncatula HOM05D007316 ORTHO05D009393 6.9e-22 106.7 65 83.1
QL02p030600 Quercus lobata HOM05D007316 ORTHO05D009393 6.9e-22 106.7 62 85.5
Duzib106G1284 Durio zibethinus HOM05D007316 ORTHO05D009393 9.0e-22 106.3 65 80.0
RcHm_v2.0_Chr4g0387841 Rosa chinensis HOM05D007316 ORTHO05D009393 9.0e-22 106.3 65 76.9
RcHm_v2.0_Chr4g0387941 Rosa chinensis HOM05D007316 ORTHO05D009393 9.0e-22 106.3 65 76.9
CSS0015421 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.2e-21 105.9 56 85.7
Sed0015703 Sechium edule HOM05D007316 ORTHO05D009393 1.2e-21 105.9 65 83.1
Gohir.D13G105800 Gossypium hirsutum HOM05D007316 ORTHO05D009393 1.5e-21 105.5 65 80.0
Potri.004G058400 Populus trichocarpa HOM05D007316 ORTHO05D009393 1.5e-21 105.5 65 80.0
ClCG09G016900 Citrullus lanatus HOM05D007316 ORTHO05D009393 2.0e-21 105.1 65 83.1
Glyma.19G223500 Glycine max HOM05D007316 ORTHO05D009393 2.0e-21 105.1 65 81.5
RcHm_v2.0_Chr4g0385941 Rosa chinensis HOM05D007316 ORTHO05D009393 2.0e-21 105.1 65 76.9
SalBow3G1440 Salvia bowleyana HOM05D007316 ORTHO05D009393 2.0e-21 105.1 60 83.3
Ciclev10023234m.g Citrus clementina HOM05D007316 ORTHO05D009393 2.6e-21 104.8 65 81.5
A07p29930 Brassica napus HOM05D007316 ORTHO05D009393 3.4e-21 104.4 61 82.0
C06p34200 Brassica napus HOM05D007316 ORTHO05D009393 3.4e-21 104.4 61 82.0
BolC6t38541H Brassica oleracea HOM05D007316 ORTHO05D009393 3.4e-21 104.4 61 82.0
BraA07t30632Z Brassica rapa HOM05D007316 ORTHO05D009393 3.4e-21 104.4 61 82.0
Migut.B00683 Erythranthe guttata HOM05D007316 ORTHO05D009393 3.4e-21 104.4 60 80.0
Migut.B00911 Erythranthe guttata HOM05D007316 ORTHO05D009393 3.4e-21 104.4 60 80.0
Peaxi162Scf00071g00128 Petunia axillaris HOM05D007316 ORTHO05D009393 4.5e-21 104.0 59 79.7
Sopen08g002530 Solanum pennellii HOM05D007316 ORTHO05D009393 4.5e-21 104.0 58 81.0
CsaV3_2G036390 Cucumis sativus L. HOM05D007316 ORTHO05D009393 7.6e-21 103.2 65 81.5
Potri.011G067800 Populus trichocarpa HOM05D007316 ORTHO05D009393 7.6e-21 103.2 65 76.9
Lalb_Chr04g0260251 Lupinus albus HOM05D007316 ORTHO05D009393 1.0e-20 102.8 65 76.9
COL.COLO4_20544 Corchorus olitorius HOM05D007316 ORTHO05D009393 1.3e-20 102.4 65 73.8
MELO3C021892.2 Cucumis melo HOM05D007316 ORTHO05D009393 1.3e-20 102.4 65 81.5
arahy.Tifrunner.gnm1.ann1.AE1MMP Arachis hypogaea HOM05D007316 ORTHO05D009393 1.7e-20 102.1 65 78.5
arahy.Tifrunner.gnm1.ann1.CUXT1U Arachis hypogaea HOM05D007316 ORTHO05D009393 1.7e-20 102.1 65 78.5
Sp5g28140 Schrenkiella parvula HOM05D007316 ORTHO05D009393 2.2e-20 101.7 61 78.7
Eucgr.H00565 Eucalyptus grandis HOM05D007316 ORTHO05D009393 2.9e-20 101.3 65 75.4
HanXRQChr07g0193721 Helianthus annuus HOM05D007316 ORTHO05D009393 2.9e-20 101.3 64 75.0
PGSC0003DMG400026307 Solanum tuberosum HOM05D007316 ORTHO05D009393 2.9e-20 101.3 58 77.6
Lj1g0006735 Lotus japonicus HOM05D007316 ORTHO05D009393 3.8e-20 100.9 62 77.4
Aa31LG4G3460 Aethionema arabicum HOM05D007316 ORTHO05D009393 4.9e-20 100.5 61 78.7
AL2G32940 Arabidopsis lyrata HOM05D007316 ORTHO05D009393 8.4e-20 99.8 61 80.3
CSS0022236 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 8.4e-20 99.8 56 82.1
Cfa016046 Carpinus fangiana HOM05D007316 ORTHO05D009393 8.4e-20 99.8 65 76.9
TWI23G0494 Tripterygium wilfordii HOM05D007316 ORTHO05D009393 8.4e-20 99.8 65 72.3
Atru.chr12.1494 Acer truncatum HOM05D007316 ORTHO05D009393 1.9e-19 98.6 62 79.0
Prupe.3G122600 Prunus persica HOM05D007316 ORTHO05D009393 1.9e-19 98.6 58 81.0
AT1G73177 Arabidopsis thaliana HOM05D007316 ORTHO05D009393 2.5e-19 98.2 61 77.0
Lsat_1_v5_gn_9_84180 Lactuca sativa HOM05D007316 ORTHO05D009393 3.2e-19 97.8 64 70.3
MD09G1239400 Malus domestica HOM05D007316 ORTHO05D009393 3.2e-19 97.8 57 80.7
Carub.0002s1996 Capsella rubella HOM05D007316 ORTHO05D009393 9.3e-19 96.3 61 75.4
CARHR066170 Cardamine hirsuta HOM05D007316 ORTHO05D009393 1.6e-18 95.5 56 76.8
PGR119G2118 Punica granatum HOM05D007316 ORTHO05D009393 1.6e-18 95.5 65 72.3
BcaC08g45665 Brassica carinata HOM05D007316 ORTHO05D009393 6.0e-18 93.6 76 65.8
Aqoxy7G02856 Aquilegia oxysepala HOM05D007316 ORTHO05D009393 3.0e-17 91.3 60 68.3
ECA236G4186 Erigeron canadensis HOM05D007316 ORTHO05D009393 1.8e-14 82.0 60 66.7
Oeu034759.1 Olea europaea HOM05D007316 ORTHO05D009393 1.0e-12 76.3 45 84.4
TAR362G0014 Trochodendron aralioides HOM05D007316 ORTHO05D009393 1.0e-12 76.3 44 84.1
Os07g0633800 Oryza sativa ssp. japonica HOM05D007316 ORTHO05D009393 1.3e-12 75.9 61 57.4
Thhalv10019421m.g Eutrema salsugineum HOM05D007316 ORTHO05D009393 1.7e-12 75.5 60 65.0
CiPaw.05G216300 Carya illinoinensis HOM05D007316 ORTHO05D009393 2.9e-12 74.7 56 71.4
GSVIVG01026029001 Vitis vinifera HOM05D007316 ORTHO05D009393 2.5e-11 71.6 48 72.9
vmacro19806 Vaccinium macrocarpon HOM05D007316 ORTHO05D009393 3.2e-11 71.2 37 89.2
Nn7g37509 Nelumbo nucifera HOM05D007316 ORTHO05D009393 5.5e-11 70.5 43 79.1
CSS0008863 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 7.2e-11 70.1 55 67.3
CSS0044079 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 7.2e-11 70.1 55 67.3
CSS0021742 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 9.3e-11 69.7 44 75.0
CSS0028514 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 9.3e-11 69.7 55 65.5
CSS0044918 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 9.3e-11 69.7 55 65.5
CSS0047183 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 9.3e-11 69.7 55 65.5
CSS0047605 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 2.7e-10 68.2 50 66.0
AUR62021328 Chenopodium quinoa HOM05D007316 ORTHO05D009393 3.5e-10 67.8 43 69.8
CSS0025187 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 4.6e-10 67.4 50 64.0
EL10Ac8g18312 Beta vulgaris HOM05D007316 ORTHO05D009393 6.1e-10 67.0 43 72.1
CAN.G530.4 Capsicum annuum HOM05D007316 ORTHO05D009393 1.3e-09 65.9 37 78.4
Ah.09g230190 Amaranthus hybridus HOM05D007316 ORTHO05D009393 1.8e-09 65.5 43 67.4
Solyc08g006570.4 Solanum lycopersicum HOM05D007316 ORTHO05D009393 2.3e-09 65.1 37 78.4
Actinidia11709 Actinidia chinensis HOM05D007316 ORTHO05D009393 5.1e-09 63.9 36 83.3
Gorai.013G118500 Gossypium raimondii HOM05D007316 ORTHO05D009393 2.5e-08 61.6 65 55.4
MBI18_g28941_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D004701 1.3e-07 59.3 44 63.6
MCO03G596 Micromonas commoda HOM05D007316 ORTHO05D009393 2.8e-07 58.2 56 42.9
Rhsim05G0117300 Rhododendron simsii HOM05D007316 ORTHO05D009393 3.7e-07 57.8 58 55.2
RhsimUnG0015700 Rhododendron simsii HOM05D007316 ORTHO05D009393 3.7e-07 57.8 58 55.2
Mapoly0010s0075 Marchantia polymorpha HOM05D007316 ORTHO05D009393 4.8e-07 57.4 54 44.4
Gohir.A13G102600 Gossypium hirsutum HOM05D007316 ORTHO05D009393 6.3e-07 57.0 65 52.3


User provided reference genes

Program Settings