Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 5.0e-254 880.6 431 100.0
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 3.4e-133 479.2 445 58.7
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 6.4e-132 474.9 449 57.0
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 1.1e-131 474.2 447 57.5
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 2.4e-131 473.0 442 57.7
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 9.2e-131 471.1 450 56.7
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 1.6e-130 470.3 449 56.1
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 4.6e-130 468.8 449 57.0
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 9.5e-128 461.1 449 57.0
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 1.6e-127 460.3 494 52.8
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 4.4e-125 452.2 424 56.4
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 6.4e-124 448.4 441 56.0
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 5.3e-118 428.7 448 51.8
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 1.7e-116 423.7 430 54.7
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 2.9e-116 422.9 444 55.4
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 6.0e-114 415.2 447 53.0
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 1.7e-113 413.7 429 52.7
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 3.0e-113 412.9 458 50.9
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 1.1e-112 411.0 444 52.9
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 9.6e-112 407.9 445 51.9
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 9.6e-112 407.9 436 54.4
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.3e-111 407.5 438 51.8
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 1.8e-110 403.7 421 53.2
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 1.8e-110 403.7 445 49.9
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 6.9e-110 401.7 429 52.2
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 1.2e-109 401.0 465 50.1
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 3.8e-108 396.0 442 50.5
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 3.2e-107 392.9 421 51.8
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 3.5e-106 389.4 415 50.8
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 3.5e-106 389.4 415 50.8
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 3.3e-104 382.9 441 49.0
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 4.3e-104 382.5 456 50.4
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 6.2e-103 378.6 428 48.6
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 6.2e-103 378.6 428 48.4
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 8.1e-103 378.3 425 52.2
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 8.1e-103 378.3 455 49.5
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 1.5e-101 374.0 438 50.7
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 3.4e-101 372.9 390 55.6
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 3.4e-101 372.9 429 51.7
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 5.8e-101 372.1 430 50.5
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 7.1e-99 365.2 416 51.0
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 9.3e-99 364.8 409 50.4
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 1.3e-97 360.9 430 46.0
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 5.1e-97 359.0 417 49.4
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.5e-96 357.5 390 52.1
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 3.3e-96 356.3 426 49.3
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 7.4e-96 355.1 453 49.0
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 7.4e-96 355.1 408 51.2
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 1.1e-94 351.3 455 47.5
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 5.8e-93 345.5 436 47.5
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 1.7e-92 344.0 407 48.4
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 4.6e-90 335.9 427 47.5
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.0e-89 334.7 397 49.6
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 1.3e-87 327.8 437 46.2
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 2.0e-85 320.5 480 42.5
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 2.5e-80 303.5 381 46.2
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 1.8e-78 297.4 320 50.0
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 8.5e-76 288.5 413 42.1
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 1.1e-70 271.6 411 40.6
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 1.0e-68 265.0 434 38.5
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 2.7e-66 256.9 402 41.5
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.3e-63 248.1 410 39.3
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 5.3e-62 242.7 416 37.7
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 2.6e-61 240.4 335 43.9
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 5.9e-61 239.2 410 36.8
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 6.1e-58 229.2 415 37.3
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 1.4e-57 228.0 407 36.6
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.8e-57 227.6 356 39.9
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 3.0e-57 226.9 406 36.7
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 5.2e-57 226.1 449 34.7
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 6.8e-57 225.7 410 37.3
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 2.6e-56 223.8 423 36.9
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 3.4e-56 223.4 423 36.4
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 7.5e-56 222.2 407 36.6
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 9.8e-56 221.9 407 36.6
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 9.8e-56 221.9 412 39.1
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 2.2e-55 220.7 407 36.4
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 2.2e-55 220.7 407 36.4
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 4.1e-54 216.5 339 39.5
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 5.4e-54 216.1 416 35.6
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 5.4e-54 216.1 407 34.9
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 9.1e-54 215.3 407 34.4
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 3.5e-53 213.4 406 35.0
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 4.5e-53 213.0 407 33.4
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 1.7e-52 211.1 455 34.3
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 2.5e-51 207.2 358 38.3
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 7.2e-51 205.7 169 60.4
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 2.7e-50 203.8 410 35.6
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 3.6e-50 203.4 384 36.2
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 2.3e-49 200.7 411 35.8
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 2.3e-49 200.7 417 33.6
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 3.0e-49 200.3 420 35.0
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 3.0e-49 200.3 374 36.1
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 8.8e-49 198.7 312 39.4
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 1.5e-48 198.0 356 36.5
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 9.8e-48 195.3 404 34.9
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.7e-47 194.5 335 36.7
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 2.2e-47 194.1 346 38.7
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 3.7e-47 193.4 415 33.5
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 4.9e-47 193.0 349 35.2
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 4.1e-46 189.9 224 48.7
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 2.1e-42 177.6 158 55.1
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 8.0e-42 175.6 136 60.3
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 2.3e-41 174.1 419 33.4
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 3.0e-41 173.7 332 37.3
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 5.2e-41 172.9 348 34.5
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 8.9e-41 172.2 415 32.5
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 1.8e-38 164.5 171 52.0
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 4.6e-37 159.8 376 34.8
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 8.6e-36 155.6 352 32.4
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 2.5e-35 154.1 350 32.3
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.5e-35 154.1 352 32.7
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 2.5e-35 154.1 281 37.4
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 3.3e-35 153.7 352 32.4
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 2.1e-34 151.0 356 31.7
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 4.7e-34 149.8 407 28.5
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 6.2e-34 149.4 350 32.0
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 8.0e-34 149.1 280 35.4
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 1.0e-33 148.7 163 49.1
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 1.8e-33 147.9 277 35.4
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 5.2e-33 146.4 350 30.6
MBI17_g35871_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 8.9e-33 145.6 106 66.0
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 5.8e-32 142.9 360 31.1
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 5.4e-30 136.3 216 42.1
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 9.2e-30 135.6 284 35.6
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 9.2e-30 135.6 284 35.6
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 1.7e-28 131.3 351 31.3
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 1.1e-27 128.6 281 31.7
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 2.8e-26 124.0 162 46.3
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 1.1e-25 122.1 162 40.1
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 1.8e-25 121.3 121 57.0
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 1.8e-25 121.3 361 31.6
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 1.5e-24 118.2 122 52.5
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 3.4e-24 117.1 122 52.5
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 1.9e-22 111.3 134 47.0
Dinv42629 Davidia involucrata HOM05D005167 ORTHO05D006312 1.7e-20 104.8 83 56.6
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 1.1e-19 102.1 139 39.6
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 1.1e-17 95.5 111 40.5
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 6.8e-17 92.8 105 45.7
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 2.0e-16 91.3 104 49.0
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 7.6e-16 89.4 163 35.0
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 4.1e-14 83.6 120 40.8
Rhsim04G0168400 Rhododendron simsii HOM05D000018 ORTHO05D008577 5.1e-12 76.6 80 52.5
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 1.2e-10 72.0 56 58.9
ECA232G3819 Erigeron canadensis HOM05D007651 ORTHO05D000898 3.6e-10 70.5 68 48.5
Gohir.A12G103850 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.4e-06 58.5 101 39.6
Nn2g11162 Nelumbo nucifera HOM05D000080 ORTHO05D000053 1.9e-06 58.2 39 69.2


User provided reference genes

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