Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g36690 Coffea canephora HOM05D006036 ORTHO05D007736 3.8e-123 444.9 229 100.0
Oeu037915.1 Olea europaea HOM05D006036 ORTHO05D007736 2.3e-88 329.3 224 71.9
MSTRG.4890 Avicennia marina HOM05D006036 ORTHO05D007736 2.4e-85 319.3 226 70.4
Ah.16g109830 Amaranthus hybridus HOM05D006036 ORTHO05D007736 2.0e-84 316.2 177 82.5
Hund17020 Selenicereus undatus HOM05D006036 ORTHO05D007736 2.6e-84 315.8 172 85.5
EL10Ac1g00899 Beta vulgaris HOM05D006036 ORTHO05D007736 3.4e-84 315.5 176 83.5
HanXRQChr16g0520241 Helianthus annuus HOM05D006036 ORTHO05D007736 3.8e-83 312.0 175 82.3
Sed0006891 Sechium edule HOM05D006036 ORTHO05D007736 5.0e-83 311.6 221 67.9
Aqoxy7G00627 Aquilegia oxysepala HOM05D006036 ORTHO05D007736 6.5e-83 311.2 226 69.5
SalBow5G3583 Salvia bowleyana HOM05D006036 ORTHO05D007736 1.1e-82 310.5 231 69.3
Sc02g0002580 Simmondsia chinensis HOM05D006036 ORTHO05D007736 1.9e-82 309.7 210 71.0
AUR62013628 Chenopodium quinoa HOM05D006036 ORTHO05D007736 2.5e-82 309.3 177 81.4
Nn1g01232 Nelumbo nucifera HOM05D006036 ORTHO05D007736 7.2e-82 307.8 227 69.2
SalBow5G0783 Salvia bowleyana HOM05D006036 ORTHO05D007736 3.6e-81 305.4 229 67.2
CsaV3_6G006160 Cucumis sativus L. HOM05D006036 ORTHO05D007736 6.1e-81 304.7 224 67.0
Lsat_1_v5_gn_4_40940 Lactuca sativa HOM05D006036 ORTHO05D007736 6.1e-81 304.7 172 80.8
Sed0014119 Sechium edule HOM05D006036 ORTHO05D007736 6.1e-81 304.7 222 67.1
ECA234G4399 Erigeron canadensis HOM05D006036 ORTHO05D007736 7.9e-81 304.3 178 80.9
TWI14G1308 Tripterygium wilfordii HOM05D006036 ORTHO05D007736 3.0e-80 302.4 224 69.2
MBI04_g35276_MAGBIO Magnolia biondii HOM05D006036 ORTHO05D007736 3.9e-80 302.0 214 68.7
Thecc.01G376100 Theobroma cacao HOM05D006036 ORTHO05D007736 1.1e-79 300.4 227 67.0
Dinv32378 Davidia involucrata HOM05D006036 ORTHO05D007736 2.0e-79 299.7 161 85.7
CiPaw.01G261900 Carya illinoinensis HOM05D006036 ORTHO05D007736 9.7e-79 297.4 225 67.1
Gohir.A08G134500 Gossypium hirsutum HOM05D006036 ORTHO05D007736 9.7e-79 297.4 176 78.4
unitig_8.g4983 Utricularia gibba HOM05D006036 ORTHO05D007736 1.7e-78 296.6 173 78.6
Duzib133G1287 Durio zibethinus HOM05D006036 ORTHO05D007736 3.7e-78 295.4 225 66.2
Sopen01g037100 Solanum pennellii HOM05D006036 ORTHO05D007736 3.7e-78 295.4 213 68.5
QL08p052466 Quercus lobata HOM05D006036 ORTHO05D007736 4.8e-78 295.0 227 67.0
Solyc01g091360.4 Solanum lycopersicum HOM05D006036 ORTHO05D007736 1.1e-77 293.9 177 78.0
Cfa001720 Carpinus fangiana HOM05D006036 ORTHO05D007736 1.8e-77 293.1 223 67.7
CDE02G2016 Ceratophyllum demersum HOM05D006036 ORTHO05D007736 1.8e-77 293.1 175 78.9
Lj9A569G50 Lonicera japonica HOM05D006036 ORTHO05D007736 4.1e-77 292.0 208 67.3
Rhsim01G0147400 Rhododendron simsii HOM05D006036 ORTHO05D007736 4.1e-77 292.0 177 79.1
Eucgr.E01417 Eucalyptus grandis HOM05D006036 ORTHO05D007736 5.3e-77 291.6 178 76.4
Haze_16816 Corylus avellana HOM05D006036 ORTHO05D007736 7.0e-77 291.2 225 67.1
PGSC0003DMG400012774 Solanum tuberosum HOM05D006036 ORTHO05D007736 7.0e-77 291.2 176 77.3
DCAR_031531 Daucus carota HOM05D006036 ORTHO05D007736 2.0e-76 289.7 164 81.7
Actinidia12688 Actinidia chinensis HOM05D006036 ORTHO05D007736 2.6e-76 289.3 177 78.0
Prupe.2G145700 Prunus persica HOM05D006036 ORTHO05D007736 3.5e-76 288.9 225 65.3
GSVIVG01027612001 Vitis vinifera HOM05D006036 ORTHO05D007736 7.7e-76 287.7 177 77.4
FAN03G0372 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.3e-75 287.0 225 63.1
FAN10G3538 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.3e-75 287.0 225 63.1
SEGI_01363 Sequoiadendron giganteum HOM05D006036 ORTHO05D007736 1.3e-75 287.0 174 74.1
Cpa.g.sc349.4 Carica papaya HOM05D006036 ORTHO05D007736 2.2e-75 286.2 179 75.4
PGR042G0035 Punica granatum HOM05D006036 ORTHO05D007736 2.2e-75 286.2 232 64.2
RcHm_v2.0_Chr1g0350591 Rosa chinensis HOM05D006036 ORTHO05D007736 2.2e-75 286.2 227 64.8
FAN01G0425 Fragaria x ananassa HOM05D006036 ORTHO05D007736 6.5e-75 284.6 220 64.5
Glyma.01G142900 Glycine max HOM05D006036 ORTHO05D007736 1.1e-74 283.9 226 63.3
Ca_03013_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 4.2e-74 282.0 207 65.2
FvH4_7g11910 Fragaria vesca HOM05D006036 ORTHO05D007736 4.2e-74 282.0 225 63.1
Zm00001eb210410 Zea mays HOM05D006036 ORTHO05D007736 4.2e-74 282.0 176 73.3
AUR62004220 Chenopodium quinoa HOM05D006036 ORTHO05D007736 1.2e-73 280.4 153 85.0
Glyma.03G023900 Glycine max HOM05D006036 ORTHO05D007736 1.2e-73 280.4 175 74.3
Glyma.14G070200 Glycine max HOM05D006036 ORTHO05D007736 1.2e-73 280.4 175 74.3
Psat7g231640 Pisum sativum HOM05D006036 ORTHO05D007736 1.2e-73 280.4 200 68.0
TPR.G9852 Trifolium pratense HOM05D006036 ORTHO05D007736 6.1e-73 278.1 175 74.3
Medtr4g023550 Medicago truncatula HOM05D006036 ORTHO05D007736 1.0e-72 277.3 175 73.7
ATR0810G113 Amborella trichopoda HOM05D006036 ORTHO05D007736 2.3e-72 276.2 165 77.0
Atru.chr5.310 Acer truncatum HOM05D006036 ORTHO05D007736 5.2e-72 275.0 209 66.5
Manes.05G045200 Manihot esculenta HOM05D006036 ORTHO05D007736 5.2e-72 275.0 222 63.1
Lalb_Chr07g0189801 Lupinus albus HOM05D006036 ORTHO05D007736 6.7e-72 274.6 175 72.0
Lj3g0008791 Lotus japonicus HOM05D006036 ORTHO05D007736 2.6e-71 272.7 226 61.1
CANSAT56G2189 Cannabis sativa HOM05D006036 ORTHO05D007736 4.4e-71 271.9 174 73.6
Phvul.010G084400 Phaseolus vulgaris HOM05D006036 ORTHO05D007736 1.7e-70 270.0 175 72.6
Glyma.08G286100 Glycine max HOM05D006036 ORTHO05D007736 2.2e-70 269.6 175 72.6
CARHR171200 Cardamine hirsuta HOM05D006036 ORTHO05D007736 2.8e-70 269.2 175 76.0
Os03g0858700 Oryza sativa ssp. japonica HOM05D006036 ORTHO05D007736 2.8e-70 269.2 177 70.1
Sabra02G0117300 Salix brachista HOM05D006036 ORTHO05D007736 3.7e-70 268.9 227 60.8
Sabra02G0115600 Salix brachista HOM05D006036 ORTHO05D007736 1.1e-69 267.3 227 60.4
arahy.Tifrunner.gnm1.ann1.B3VI1A Arachis hypogaea HOM05D006036 ORTHO05D007736 1.8e-69 266.5 171 72.5
CSS0011162 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 1.8e-69 266.5 166 76.5
CSS0022013 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 1.8e-69 266.5 166 76.5
MD02G1204100 Malus domestica HOM05D006036 ORTHO05D007736 1.8e-69 266.5 175 72.6
Thhalv10006234m.g Eutrema salsugineum HOM05D006036 ORTHO05D007736 2.4e-69 266.2 225 65.3
Potri.002G148400 Populus trichocarpa HOM05D006036 ORTHO05D007736 5.3e-69 265.0 177 70.6
Carub.0005s2756 Capsella rubella HOM05D006036 ORTHO05D007736 2.6e-68 262.7 225 64.0
AL5G43130 Arabidopsis lyrata HOM05D006036 ORTHO05D007736 4.5e-68 261.9 225 61.3
A09p53070 Brassica napus HOM05D006036 ORTHO05D007736 4.5e-68 261.9 174 74.7
AT3G60810 Arabidopsis thaliana HOM05D006036 ORTHO05D007736 7.7e-68 261.2 225 62.2
Aa31LG10G15050 Aethionema arabicum HOM05D006036 ORTHO05D007736 1.0e-67 260.8 174 74.1
BcaC07g40602 Brassica carinata HOM05D006036 ORTHO05D007736 1.7e-67 260.0 174 74.1
C08p35770 Brassica napus HOM05D006036 ORTHO05D007736 1.7e-67 260.0 174 74.1
BolC8t51167H Brassica oleracea HOM05D006036 ORTHO05D007736 2.2e-67 259.6 174 74.1
Nitab4.5_0005372g0020 Nicotiana tabacum HOM05D006036 ORTHO05D007736 3.8e-67 258.8 152 80.3
Sp5g02440 Schrenkiella parvula HOM05D006036 ORTHO05D007736 3.8e-67 258.8 174 73.6
vmacro21009 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 3.8e-67 258.8 161 75.8
BcaC07g42642 Brassica carinata HOM05D006036 ORTHO05D007736 1.5e-66 256.9 174 73.0
BraA09t40733Z Brassica rapa HOM05D006036 ORTHO05D007736 1.2e-65 253.8 171 74.3
THA.LOC104802443 Tarenaya hassleriana HOM05D006036 ORTHO05D007736 1.2e-65 253.8 224 59.8
Medtr7g074920 Medicago truncatula HOM05D006036 ORTHO05D007736 2.1e-65 253.1 178 65.2
Ciclev10022362m.g Citrus clementina HOM05D006036 ORTHO05D007736 5.2e-64 248.4 151 76.8
Mapoly0007s0216 Marchantia polymorpha HOM05D006036 ORTHO05D007736 6.8e-64 248.1 174 63.8
Pp3c23_9860 Physcomitrium patens HOM05D006036 ORTHO05D007736 6.8e-64 248.1 171 67.3
vmacro21008 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 2.6e-63 246.1 153 76.5
FAN10G0738 Fragaria x ananassa HOM05D006036 ORTHO05D007736 7.5e-63 244.6 156 72.4
AagrBONN_evm.TU.Sc2ySwM_117.1558 Anthoceros agrestis HOM05D006036 ORTHO05D007736 9.7e-63 244.2 169 66.3
SMO143G0045 Selaginella moellendorffii HOM05D006036 ORTHO05D007736 9.1e-61 237.7 151 70.9
PSO782G0421 Papaver somniferum HOM05D006036 ORTHO05D007736 1.6e-60 236.9 176 64.8
arahy.Tifrunner.gnm1.ann1.Y8TVDJ Arachis hypogaea HOM05D006036 ORTHO05D007736 2.0e-60 236.5 151 72.8
SGA_v2.0_scaffold153G37014 Striga asiatica HOM05D006036 ORTHO05D001464 3.5e-60 235.7 218 56.9
PSO478G2400 Papaver somniferum HOM05D006036 ORTHO05D007736 2.9e-59 232.6 176 64.2
Gohir.D08G155400 Gossypium hirsutum HOM05D006036 ORTHO05D007736 2.7e-57 226.1 159 68.6
Hma1.2p1_1122F.1_g259290 Hydrangea macrophylla HOM05D006036 ORTHO05D007736 2.3e-56 223.0 171 64.3
VMungo0251G0926 Vigna mungo HOM05D006036 ORTHO05D007736 8.3e-54 214.5 176 60.8
ClCG06G000370 Citrullus lanatus HOM05D006036 ORTHO05D007736 7.7e-52 208.0 221 52.5
Cre11.g468750 Chlamydomonas reinhardtii HOM05D006036 ORTHO05D007736 4.2e-50 202.2 174 56.9
VMungo0331G0186 Vigna mungo HOM05D006036 ORTHO05D007736 5.5e-50 201.8 203 52.7
Nitab4.5_0000457g0290 Nicotiana tabacum HOM05D006036 ORTHO05D007736 1.8e-48 196.8 217 53.0
MELO3C035247.2 Cucumis melo HOM05D006036 ORTHO05D007736 4.4e-47 192.2 107 81.3
COL.COLO4_12549 Corchorus olitorius HOM05D006036 ORTHO05D007736 1.3e-46 190.7 175 57.7
Peaxi162Scf00021g01720 Petunia axillaris HOM05D006036 ORTHO05D007736 1.6e-44 183.7 109 80.7
CAN.G388.12 Capsicum annuum HOM05D006036 ORTHO05D007736 6.1e-41 171.8 109 74.3
Glyma.09G269100 Glycine max HOM05D006036 ORTHO05D007736 4.6e-36 155.6 117 63.2
Migut.N01635 Erythranthe guttata HOM05D006036 ORTHO05D007736 1.3e-35 154.1 91 78.0
FAN06G1700 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.7e-35 153.7 93 77.4
Lalb_Chr03g0039561 Lupinus albus HOM05D006036 ORTHO05D007736 1.5e-34 150.6 123 58.5
MCO13G087 Micromonas commoda HOM05D006036 ORTHO05D007736 3.1e-32 142.9 173 45.7
Ca_07819_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 8.9e-32 141.4 93 68.8
CBR_g54966 Chara braunii HOM05D006036 ORTHO05D007736 1.3e-30 137.5 82 76.8
Ca_19909_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 1.3e-30 137.5 95 65.3
FAN06G2896 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.7e-30 137.1 76 80.3
MELO3C034959.2 Cucumis melo HOM05D006036 ORTHO05D007736 6.2e-25 118.6 117 56.4
Gorai.007G091200 Gossypium raimondii HOM05D001611 ORTHO05D001464 8.1e-25 118.2 70 75.7
Ciclev10033315m.g Citrus clementina HOM05D006036 ORTHO05D007736 1.2e-23 114.4 141 48.2
Gohir.D11G085366 Gossypium hirsutum HOM05D001611 ORTHO05D001464 1.5e-23 114.0 70 72.9
Lalb_Chr03g0039551 Lupinus albus HOM05D006036 ORTHO05D007736 1.3e-19 100.9 78 60.3
Psat3g116040 Pisum sativum HOM05D006036 ORTHO05D007736 2.5e-18 96.7 65 64.6
Lj1g0011795 Lotus japonicus HOM05D006036 ORTHO05D007736 4.7e-17 92.4 54 75.9
arahy.Tifrunner.gnm1.ann1.WD24C8 Arachis hypogaea HOM05D006036 ORTHO05D007736 2.0e-15 87.0 67 59.7
Gorai.004G161600 Gossypium raimondii HOM05D006036 ORTHO05D007736 2.4e-13 80.1 69 59.4
arahy.Tifrunner.gnm1.ann1.BW32E7 Arachis hypogaea HOM05D006036 ORTHO05D000587 6.0e-12 75.5 59 59.3


User provided reference genes

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