Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 0.0e+00 1286.6 681 100.0
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 2.0e-273 945.7 692 70.2
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 2.0e-273 945.7 692 70.2
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 1.7e-264 916.0 683 70.4
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 4.0e-261 904.8 551 77.3
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 2.8e-259 898.7 683 69.7
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 1.4e-258 896.3 684 65.8
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 1.8e-258 896.0 682 67.2
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 9.1e-258 893.6 551 76.0
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 1.1e-255 886.7 545 75.2
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 2.5e-255 885.6 623 68.7
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 3.2e-255 885.2 548 77.0
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 2.7e-254 882.1 689 65.2
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.7e-254 882.1 551 75.9
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 3.6e-254 881.7 548 76.5
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 8.0e-254 880.6 554 76.2
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 1.0e-253 880.2 549 76.5
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 1.4e-253 879.8 546 77.3
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 1.8e-253 879.4 551 76.2
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 1.8e-253 879.4 549 76.5
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 2.3e-253 879.0 548 76.3
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 2.3e-253 879.0 546 77.1
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 3.0e-253 878.6 689 65.0
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 3.0e-253 878.6 684 64.8
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 4.0e-253 878.2 551 75.9
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 1.5e-252 876.3 548 76.3
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 1.5e-252 876.3 683 64.4
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 2.0e-252 875.9 684 64.2
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 3.4e-252 875.2 658 67.8
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 7.5e-252 874.0 527 78.9
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 9.8e-252 873.6 560 74.3
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 9.8e-252 873.6 548 75.9
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 1.7e-251 872.8 553 74.0
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 3.7e-251 871.7 546 76.7
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 3.1e-250 868.6 554 75.3
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 3.1e-250 868.6 560 73.9
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 2.0e-249 865.9 691 64.3
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 7.7e-249 864.0 548 75.2
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 7.7e-249 864.0 548 75.2
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.0e-248 863.6 548 75.2
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.2e-248 862.4 548 75.0
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 2.9e-248 862.1 687 62.6
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.8e-248 861.7 548 75.0
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 3.8e-248 861.7 559 73.9
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 6.5e-248 860.9 557 72.9
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 4.2e-247 858.2 548 74.8
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 7.2e-247 857.4 557 72.9
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 9.4e-247 857.1 553 73.8
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.6e-246 856.3 547 74.2
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.6e-246 856.3 559 73.0
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 1.8e-245 852.8 684 62.0
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 2.3e-245 852.4 661 66.3
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 3.0e-245 852.0 547 74.2
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 2.0e-244 849.4 551 74.8
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 7.5e-244 847.4 558 72.2
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 1.7e-243 846.3 557 72.7
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 4.9e-243 844.7 658 65.0
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 2.0e-241 839.3 700 62.1
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 5.9e-241 837.8 560 72.0
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 2.9e-240 835.5 697 62.7
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 4.2e-239 831.6 557 72.5
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.2e-238 830.1 556 71.6
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 6.1e-238 827.8 551 73.0
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 2.3e-237 825.9 558 72.0
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 2.6e-236 822.4 683 60.8
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 5.7e-236 821.2 555 71.0
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 5.7e-236 821.2 683 61.2
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 5.7e-236 821.2 697 60.3
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 7.5e-236 820.8 699 60.8
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 1.3e-235 820.1 698 61.5
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 1.7e-235 819.7 536 73.3
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 3.7e-235 818.5 683 60.6
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 1.4e-234 816.6 556 71.6
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 5.4e-234 814.7 618 66.2
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 9.2e-234 813.9 551 71.1
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 1.2e-233 813.5 633 68.6
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 1.5e-231 806.6 547 71.3
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 1.5e-231 806.6 550 70.4
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 1.5e-231 806.6 550 70.4
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 3.3e-231 805.4 554 69.7
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 4.7e-230 801.6 546 70.3
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 2.4e-226 789.3 565 68.3
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 9.2e-226 787.3 552 69.2
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 1.6e-225 786.6 697 59.8
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 2.0e-225 786.2 690 60.1
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 3.5e-225 785.4 567 68.6
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 4.6e-225 785.0 564 68.3
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 1.3e-224 783.5 577 68.3
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 2.3e-224 782.7 555 68.6
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 1.1e-223 780.4 567 68.3
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 1.6e-222 776.5 552 69.0
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 1.6e-222 776.5 571 67.8
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 8.1e-222 774.2 689 59.5
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 8.1e-222 774.2 529 71.3
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 6.8e-221 771.2 517 71.0
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 8.9e-221 770.8 544 69.7
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 2.6e-220 769.2 544 69.5
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 5.8e-220 768.1 552 67.9
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 2.9e-219 765.8 547 69.3
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 2.9e-219 765.8 547 69.3
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 2.9e-219 765.8 547 69.3
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 1.9e-218 763.1 688 59.3
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 1.5e-215 753.4 551 66.2
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 8.9e-213 744.2 556 66.0
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 1.2e-212 743.8 543 65.2
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 5.8e-212 741.5 616 64.6
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 8.4e-211 737.6 564 64.5
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 8.4e-211 737.6 513 70.4
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.7e-208 729.9 513 69.6
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 8.6e-208 727.6 553 66.2
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 1.9e-207 726.5 698 54.3
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 8.7e-200 701.0 692 56.2
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 3.3e-199 699.1 692 56.1
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 3.3e-199 699.1 692 56.1
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 9.9e-196 687.6 655 56.0
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 1.3e-192 677.2 553 61.7
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 6.6e-192 674.9 672 54.9
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 3.1e-189 666.0 671 54.8
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 6.9e-189 664.8 426 74.9
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 1.7e-187 660.2 581 59.6
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 1.8e-184 650.2 575 59.0
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 2.2e-179 633.3 549 60.1
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 1.4e-173 614.0 586 56.3
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 3.3e-167 592.8 455 67.0
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 2.2e-158 563.5 411 68.6
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 2.8e-158 563.1 454 63.9
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 1.2e-156 557.8 547 54.5
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 3.5e-148 529.6 549 50.3
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 4.1e-133 479.6 336 67.9
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 1.1e-122 444.9 385 56.4
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 8.9e-120 435.3 382 55.5
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 5.8e-111 406.0 285 66.3
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 1.2e-92 345.1 634 36.4
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 1.2e-87 328.6 350 54.0
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 1.3e-70 271.9 389 42.2
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 5.5e-69 266.5 176 68.2
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 6.2e-65 253.1 216 57.4
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 2.3e-43 181.4 164 54.9
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 2.0e-42 178.3 152 56.6
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 4.1e-32 144.1 296 31.8
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 2.3e-27 128.3 67 91.0
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 1.8e-24 118.6 101 60.4
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 7.2e-21 106.7 91 61.5
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 9.4e-21 106.3 83 62.7
AagrBONN_evm.TU.Sc2ySwM_344.1101 Anthoceros agrestis HOM05D004961 ORTHO05D006258 4.0e-19 100.9 160 36.2
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 3.2e-13 81.3 63 60.3
unitig_8.g3389 Utricularia gibba HOM05D004961 ORTHO05D006258 3.2e-13 81.3 185 35.1
HanXRQChr12g0366651 Helianthus annuus HOM05D001845 ORTHO05D001878 2.2e-09 68.6 57 64.9
BcaC07g40607 Brassica carinata HOM05D003135 ORTHO05D023343 6.6e-06 57.0 38 68.4


User provided reference genes

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