Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g36550 Coffea canephora HOM05D003683 ORTHO05D004143 4.0e-54 214.5 111 100.0
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 5.5e-19 97.8 97 54.6
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 2.7e-18 95.5 102 51.0
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 9.0e-14 80.5 81 54.3
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 1.4e-11 73.2 99 45.5
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.9e-11 72.8 79 51.9
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 7.2e-11 70.9 95 45.3
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 6.1e-10 67.8 75 50.7
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 7.9e-10 67.4 89 46.1
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.0e-09 67.0 101 43.6
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 1.4e-09 66.6 75 53.3
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.8e-09 66.2 77 51.9
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 1.8e-09 66.2 101 43.6
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.8e-09 66.2 101 43.6
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 2.3e-09 65.9 89 49.4
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 3.0e-09 65.5 73 50.7
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 3.0e-09 65.5 101 43.6
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 3.0e-09 65.5 101 44.6
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 3.0e-09 65.5 86 47.7
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 3.9e-09 65.1 95 43.2
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 3.9e-09 65.1 108 39.8
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 5.1e-09 64.7 101 42.6
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.1e-08 63.5 102 40.2
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 1.5e-08 63.2 102 40.2
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.5e-08 63.2 101 42.6
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.5e-08 63.2 89 43.8
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.5e-08 63.2 102 39.2
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 1.5e-08 63.2 96 42.7
Solyc01g091490.3 Solanum lycopersicum HOM05D003683 ORTHO05D004143 1.5e-08 63.2 104 40.4
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 1.9e-08 62.8 82 50.0
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.9e-08 62.8 108 38.9
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 2.5e-08 62.4 96 43.8
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 2.5e-08 62.4 85 44.7
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 3.3e-08 62.0 86 44.2
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 7.4e-08 60.8 93 45.2
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 7.4e-08 60.8 87 46.0
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 7.4e-08 60.8 87 44.8
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 1.3e-07 60.1 87 42.5
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.3e-07 60.1 95 42.1
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 1.7e-07 59.7 93 45.2
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.7e-07 59.7 90 45.6
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 2.2e-07 59.3 77 49.4
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.2e-07 59.3 95 42.1
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 2.2e-07 59.3 93 44.1
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 2.2e-07 59.3 93 44.1
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 2.8e-07 58.9 86 43.0
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 2.8e-07 58.9 98 37.8
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 3.7e-07 58.5 48 58.3
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 3.7e-07 58.5 82 47.6
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 3.7e-07 58.5 105 40.0
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 4.8e-07 58.2 83 49.4
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 4.8e-07 58.2 81 46.9
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 4.8e-07 58.2 93 43.0
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 6.3e-07 57.8 98 41.8
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 8.2e-07 57.4 83 44.6
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 8.2e-07 57.4 64 46.9
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 8.2e-07 57.4 98 38.8
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 8.2e-07 57.4 102 44.1
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 1.1e-06 57.0 80 46.2
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 1.1e-06 57.0 94 45.7
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 1.1e-06 57.0 81 45.7
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 1.4e-06 56.6 90 44.4
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.4e-06 56.6 95 41.1
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 1.4e-06 56.6 91 41.8
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 1.4e-06 56.6 93 41.9
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 1.8e-06 56.2 73 47.9
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.8e-06 56.2 57 54.4
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 1.8e-06 56.2 80 45.0
Sabra02G0118400 Salix brachista HOM05D003683 ORTHO05D004143 2.4e-06 55.8 67 46.3
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 3.1e-06 55.5 45 60.0
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 4.1e-06 55.1 86 41.9
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 4.1e-06 55.1 88 46.6
HanXRQChr16g0521651 Helianthus annuus HOM05D003683 ORTHO05D004143 4.1e-06 55.1 45 57.8
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 4.1e-06 55.1 73 45.2
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 5.3e-06 54.7 51 60.8
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 5.3e-06 54.7 82 45.1
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 5.3e-06 54.7 57 52.6
PGSC0003DMG400012753 Solanum tuberosum HOM05D003683 ORTHO05D004143 5.3e-06 54.7 108 37.0
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 6.9e-06 54.3 71 49.3
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 6.9e-06 54.3 75 46.7
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 6.9e-06 54.3 92 41.3


User provided reference genes

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