Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g36520 Coffea canephora HOM05D006822 ORTHO05D008884 0.0e+00 1180.2 698 100.0
PGSC0003DMG401012750 Solanum tuberosum HOM05D006822 ORTHO05D008884 3.6e-193 679.1 711 61.6
Nitab4.5_0004320g0040 Nicotiana tabacum HOM05D006822 ORTHO05D008884 1.7e-190 670.2 703 57.6
CAN.G170.5 Capsicum annuum HOM05D006822 ORTHO05D008884 1.6e-188 663.7 707 60.3
Solyc01g091510.4 Solanum lycopersicum HOM05D006822 ORTHO05D008884 2.1e-188 663.3 708 61.6
Sopen01g037280 Solanum pennellii HOM05D006822 ORTHO05D008884 2.7e-188 662.9 708 61.3
CSS0016394 Camellia sinensis var. sinensis HOM05D006822 ORTHO05D008884 3.0e-187 659.4 677 67.4
Rhsim07G0025500 Rhododendron simsii HOM05D006822 ORTHO05D008884 5.1e-187 658.7 677 58.6
Peaxi162Scf00021g01312 Petunia axillaris HOM05D006822 ORTHO05D008884 6.6e-187 658.3 756 51.5
Oeu003493.1 Olea europaea HOM05D006822 ORTHO05D008884 5.6e-186 655.2 693 62.0
vmacro13383 Vaccinium macrocarpon HOM05D006822 ORTHO05D008884 1.5e-183 647.1 679 57.0
Hma1.2p1_0053F.1_g030830 Hydrangea macrophylla HOM05D006822 ORTHO05D008884 4.9e-182 642.1 684 56.4
Nitab4.5_0013912g0010 Nicotiana tabacum HOM05D006822 ORTHO05D008884 8.3e-182 641.3 564 61.3
SGA_v2.0_scaffold95G28889 Striga asiatica HOM05D006822 ORTHO05D008884 8.3e-182 641.3 693 56.7
Lj7A526T89 Lonicera japonica HOM05D006822 ORTHO05D008884 1.1e-181 641.0 700 59.3
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 1.0e-179 634.4 683 58.1
Migut.B01651 Erythranthe guttata HOM05D006822 ORTHO05D008884 1.3e-179 634.0 704 56.4
GSVIVG01027532001 Vitis vinifera HOM05D006822 ORTHO05D008884 6.6e-179 631.7 682 59.5
CiPaw.01G260400 Carya illinoinensis HOM05D006822 ORTHO05D008884 5.2e-176 622.1 704 53.7
QL08p051944 Quercus lobata HOM05D006822 ORTHO05D008884 8.9e-176 621.3 705 65.0
CsaV3_3G009540 Cucumis sativus L. HOM05D006822 ORTHO05D008884 8.4e-174 614.8 674 58.8
HanXRQChr04g0122211 Helianthus annuus HOM05D006822 ORTHO05D008884 1.1e-173 614.4 680 57.1
Manes.01G264800 Manihot esculenta HOM05D006822 ORTHO05D008884 9.3e-173 611.3 704 55.0
MELO3C006175.2 Cucumis melo HOM05D006822 ORTHO05D008884 4.6e-172 609.0 675 59.1
Haze_16833 Corylus avellana HOM05D006822 ORTHO05D008884 7.8e-172 608.2 701 55.3
ClCG05G002100 Citrullus lanatus HOM05D006822 ORTHO05D008884 1.7e-171 607.1 679 56.8
Cfa001701 Carpinus fangiana HOM05D006822 ORTHO05D008884 9.6e-170 601.3 700 54.3
Hma1.2p1_0053F.1_g030820 Hydrangea macrophylla HOM05D006822 ORTHO05D008884 6.2e-169 598.6 537 59.8
Atru.chr5.328 Acer truncatum HOM05D006822 ORTHO05D008884 1.1e-168 597.8 670 54.9
Cpa.g.sc18.138 Carica papaya HOM05D006822 ORTHO05D008884 1.1e-168 597.8 677 56.7
Gohir.A08G031700 Gossypium hirsutum HOM05D006822 ORTHO05D008884 2.4e-168 596.7 715 62.0
CANSAT56G1004 Cannabis sativa HOM05D006822 ORTHO05D008884 4.0e-168 595.9 680 64.0
Gorai.004G041400 Gossypium raimondii HOM05D006822 ORTHO05D008884 4.4e-167 592.4 712 60.3
Thecc.01G374100 Theobroma cacao HOM05D006822 ORTHO05D008884 5.8e-167 592.0 680 55.0
Gohir.D08G042800 Gossypium hirsutum HOM05D006822 ORTHO05D008884 2.2e-166 590.1 682 62.2
Lsat_1_v5_gn_7_7481 Lactuca sativa HOM05D006822 ORTHO05D008884 2.2e-166 590.1 674 56.5
Sed0020963 Sechium edule HOM05D006822 ORTHO05D008884 3.8e-166 589.3 676 56.7
Potri.002G149800 Populus trichocarpa HOM05D006822 ORTHO05D008884 6.4e-166 588.6 685 54.9
Duzib133G0703 Durio zibethinus HOM05D006822 ORTHO05D008884 1.9e-165 587.0 683 59.2
TAR375G1023 Trochodendron aralioides HOM05D006822 ORTHO05D008884 3.2e-165 586.3 694 53.3
Ciclev10019178m.g Citrus clementina HOM05D006822 ORTHO05D008884 1.0e-163 581.3 701 55.1
Aqoxy7G00564 Aquilegia oxysepala HOM05D006822 ORTHO05D008884 3.3e-162 576.2 678 53.5
Eucgr.D02443 Eucalyptus grandis HOM05D006822 ORTHO05D008884 4.8e-161 572.4 679 57.9
Ah.05g175170 Amaranthus hybridus HOM05D006822 ORTHO05D008884 1.8e-160 570.5 696 54.7
Ca_07832_v3 Cicer arietinum L. HOM05D006822 ORTHO05D008884 3.1e-160 569.7 676 51.8
MD02G1201200 Malus domestica HOM05D006822 ORTHO05D008884 4.0e-160 569.3 701 53.5
TWI14G1233 Tripterygium wilfordii HOM05D006822 ORTHO05D008884 6.9e-160 568.5 673 62.0
Sc23g0003500 Simmondsia chinensis HOM05D006822 ORTHO05D008884 9.0e-160 568.2 735 50.1
COL.COLO4_12575 Corchorus olitorius HOM05D006822 ORTHO05D008884 1.2e-159 567.8 672 53.7
EL10Ac1g00937 Beta vulgaris HOM05D006822 ORTHO05D008884 7.6e-159 565.1 691 54.8
Glyma.18G222100 Glycine max HOM05D006822 ORTHO05D008884 3.2e-157 559.7 703 50.9
Hund27354 Selenicereus undatus HOM05D006822 ORTHO05D008884 5.4e-157 558.9 724 52.6
Glyma.09G267800 Glycine max HOM05D006822 ORTHO05D008884 9.3e-157 558.1 674 51.6
VMungo1383G2566 Vigna mungo HOM05D006822 ORTHO05D008884 9.3e-157 558.1 669 50.4
Lalb_Chr01g0021331 Lupinus albus HOM05D006822 ORTHO05D008884 2.1e-156 557.0 700 47.7
PGR031G1001 Punica granatum HOM05D006822 ORTHO05D008884 7.9e-156 555.1 698 59.5
PSO478G2587 Papaver somniferum HOM05D006822 ORTHO05D008884 2.3e-155 553.5 678 50.0
Sabra02G0118500 Salix brachista HOM05D006822 ORTHO05D008884 3.9e-155 552.7 666 53.0
Medtr7g075170 Medicago truncatula HOM05D006822 ORTHO05D008884 5.1e-155 552.4 681 59.2
Psat3g115280 Pisum sativum HOM05D006822 ORTHO05D008884 3.3e-154 549.7 676 59.9
AUR62004233 Chenopodium quinoa HOM05D006822 ORTHO05D008884 4.3e-154 549.3 674 49.9
Lj1g0013249 Lotus japonicus HOM05D006822 ORTHO05D008884 7.4e-154 548.5 699 52.2
Prupe.2G147600 Prunus persica HOM05D006822 ORTHO05D008884 9.6e-154 548.1 551 55.2
unitig_22.g5376 Utricularia gibba HOM05D006822 ORTHO05D008884 1.3e-153 547.7 677 52.0
Phvul.008G075100 Phaseolus vulgaris HOM05D006822 ORTHO05D008884 2.8e-153 546.6 671 50.4
AUR62013615 Chenopodium quinoa HOM05D006822 ORTHO05D008884 3.7e-153 546.2 681 49.9
TPR.G26925 Trifolium pratense HOM05D006822 ORTHO05D008884 3.7e-153 546.2 676 57.4
arahy.Tifrunner.gnm1.ann1.K16L32 Arachis hypogaea HOM05D006822 ORTHO05D008884 3.1e-152 543.1 676 57.0
arahy.Tifrunner.gnm1.ann1.485MU0 Arachis hypogaea HOM05D006822 ORTHO05D008884 2.2e-150 537.0 704 50.3
FAN01G0942 Fragaria x ananassa HOM05D006822 ORTHO05D008884 2.9e-150 536.6 547 56.5
FAN06G2864 Fragaria x ananassa HOM05D006822 ORTHO05D008884 5.5e-149 532.3 546 56.4
FvH4_7g12110 Fragaria vesca HOM05D006822 ORTHO05D008884 7.1e-149 531.9 546 56.2
Actinidia31423 Actinidia chinensis HOM05D006822 ORTHO05D008884 6.0e-148 528.9 682 48.5
HPP92_015074 Vanilla planifolia HOM05D006822 ORTHO05D008884 1.8e-147 527.3 696 46.8
THA.LOC104817014 Tarenaya hassleriana HOM05D006822 ORTHO05D008884 9.6e-146 521.5 668 55.1
RcHm_v2.0_Chr1g0350861 Rosa chinensis HOM05D006822 ORTHO05D008884 1.4e-144 517.7 535 55.7
Nn1g01174 Nelumbo nucifera HOM05D006822 ORTHO05D008884 1.3e-142 511.1 584 52.1
MBI04_g46545_MAGBIO Magnolia biondii HOM05D006822 ORTHO05D008884 2.5e-138 496.9 622 56.1
Os04g0574600 Oryza sativa ssp. japonica HOM05D006822 ORTHO05D008884 3.3e-138 496.5 687 48.3
CSS0048598 Camellia sinensis var. sinensis HOM05D006822 ORTHO05D008884 4.3e-138 496.1 581 64.4
Aa31LG1G11250 Aethionema arabicum HOM05D006822 ORTHO05D008884 5.7e-138 495.7 737 52.1
Lsat_1_v5_gn_3_133341 Lactuca sativa HOM05D006822 ORTHO05D008884 4.5e-135 486.1 525 51.4
Zm00001eb073430 Zea mays HOM05D006822 ORTHO05D008884 1.7e-134 484.2 694 50.0
AT1G01930 Arabidopsis thaliana HOM05D006822 ORTHO05D008884 5.0e-134 482.6 548 51.1
CDE11G0821 Ceratophyllum demersum HOM05D006822 ORTHO05D008884 3.2e-133 479.9 517 51.6
ECA236G3401 Erigeron canadensis HOM05D006822 ORTHO05D008884 1.2e-132 478.0 432 59.0
Sp1g00370 Schrenkiella parvula HOM05D006822 ORTHO05D008884 1.2e-132 478.0 548 50.5
Medtr7g075185 Medicago truncatula HOM05D006822 ORTHO05D008884 2.0e-130 470.7 518 51.9
AL1G10390 Arabidopsis lyrata HOM05D006822 ORTHO05D008884 7.4e-130 468.8 517 50.5
HanXRQChr13g0425441 Helianthus annuus HOM05D006822 ORTHO05D008884 6.3e-129 465.7 524 50.0
Carub.0001s0031 Capsella rubella HOM05D006822 ORTHO05D008884 3.1e-128 463.4 521 51.2
Thhalv10007219m.g Eutrema salsugineum HOM05D006822 ORTHO05D008884 6.9e-128 462.2 548 50.0
SEGI_38546 Sequoiadendron giganteum HOM05D006822 ORTHO05D008884 2.1e-124 450.7 689 43.5
C08p53940 Brassica napus HOM05D006822 ORTHO05D008884 1.8e-120 437.6 514 50.2
BolC8t52907H Brassica oleracea HOM05D006822 ORTHO05D008884 1.8e-120 437.6 514 50.2
BraA09t42269Z Brassica rapa HOM05D006822 ORTHO05D008884 9.4e-117 425.2 520 49.2
Eucgr.L02337 Eucalyptus grandis HOM05D006822 ORTHO05D008884 2.6e-114 417.2 598 53.5
FAN03G3111 Fragaria x ananassa HOM05D006822 ORTHO05D008884 3.2e-109 400.2 555 46.3
ECA240G3107 Erigeron canadensis HOM05D006822 ORTHO05D008884 9.8e-106 388.7 434 51.8
ATR0757G063 Amborella trichopoda HOM05D006822 ORTHO05D008884 1.1e-101 375.2 385 53.0
Pp3c3_38070 Physcomitrium patens HOM05D006822 ORTHO05D008884 7.3e-93 345.9 524 41.0
COL.COLO4_05508 Corchorus olitorius HOM05D006822 ORTHO05D008884 2.2e-89 334.3 376 50.8
Mapoly0008s0196 Marchantia polymorpha HOM05D006822 ORTHO05D008884 3.7e-89 333.6 693 41.4
AagrBONN_evm.TU.Sc2ySwM_117.565 Anthoceros agrestis HOM05D006822 ORTHO05D008884 7.0e-88 329.3 623 41.6
CARHR000420 Cardamine hirsuta HOM05D006822 ORTHO05D008884 7.3e-69 266.2 329 50.2
FAN10G0810 Fragaria x ananassa HOM05D006822 ORTHO05D008884 2.2e-65 254.6 546 34.2
Cre07.g325715 Chlamydomonas reinhardtii HOM05D006822 ORTHO05D008884 3.2e-56 224.2 481 32.8
CARHR000430 Cardamine hirsuta HOM05D006822 ORTHO05D008884 2.1e-55 221.5 230 50.4
SEGI_35234 Sequoiadendron giganteum HOM05D006822 ORTHO05D008884 2.4e-48 198.0 232 47.4
PRCOL_00005597 Prasinoderma coloniale HOM05D006822 ORTHO05D008884 1.4e-32 145.6 314 33.8
Cfa022202 Carpinus fangiana HOM05D006822 ORTHO05D004559 6.3e-28 130.2 516 27.5
Medtr7g075430 Medicago truncatula HOM05D006822 ORTHO05D008884 2.7e-23 114.8 166 45.2
ATR0757G024 Amborella trichopoda HOM05D006822 ORTHO05D004559 4.8e-12 77.4 188 55.3
Medtr7g075450 Medicago truncatula HOM05D006822 ORTHO05D008884 5.9e-10 70.5 98 42.9
arahy.Tifrunner.gnm1.ann1.EYK22X Arachis hypogaea HOM05D006822 ORTHO05D008884 1.7e-09 68.9 51 58.8
CsaV3_4G032230 Cucumis sativus L. HOM05D006822 ORTHO05D008884 7.2e-08 63.5 94 40.4
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 1.0e-06 59.7 238 29.0


User provided reference genes

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