Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g36100 Coffea canephora HOM05D004979 ORTHO05D006190 0.0e+00 1094.7 530 100.0
Cc02_g36050 Coffea canephora HOM05D004979 ORTHO05D006190 0.0e+00 1077.4 530 97.7
Oeu061912.1 Olea europaea HOM05D004979 ORTHO05D006190 1.4e-261 906.0 523 80.3
CSS0020951 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 2.5e-255 885.2 522 77.8
CSS0020926 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 1.6e-254 882.5 522 77.6
MSTRG.16439 Avicennia marina HOM05D004979 ORTHO05D006190 1.4e-253 879.4 523 77.4
Migut.B00894 Erythranthe guttata HOM05D004979 ORTHO05D006190 5.3e-253 877.5 528 77.8
Actinidia22849 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.1e-250 869.8 520 76.7
CAN.G756.6 Capsicum annuum HOM05D004979 ORTHO05D006190 1.5e-247 859.4 515 77.5
PGSC0003DMG400001886 Solanum tuberosum HOM05D004979 ORTHO05D006190 1.5e-247 859.4 515 77.7
Solyc04g055190.4 Solanum lycopersicum HOM05D004979 ORTHO05D006190 1.4e-245 852.8 515 77.3
RcHm_v2.0_Chr1g0332651 Rosa chinensis HOM05D004979 ORTHO05D006190 9.9e-244 846.7 519 75.3
CAN.G1715.7 Capsicum annuum HOM05D004979 ORTHO05D006190 1.7e-243 845.9 515 77.3
Dinv24526 Davidia involucrata HOM05D004979 ORTHO05D006190 4.9e-243 844.3 520 76.0
FAN01G0279 Fragaria x ananassa HOM05D004979 ORTHO05D006190 5.5e-242 840.9 521 74.5
EL10Ac8g20414 Beta vulgaris HOM05D004979 ORTHO05D006190 1.6e-241 839.3 522 73.8
PGR004G0062 Punica granatum HOM05D004979 ORTHO05D006190 4.6e-241 837.8 518 73.6
PGR117G0001 Punica granatum HOM05D004979 ORTHO05D006190 1.3e-240 836.3 518 73.7
CiPaw.01G000500 Carya illinoinensis HOM05D004979 ORTHO05D006190 5.1e-240 834.3 521 75.0
Manes.08G106500 Manihot esculenta HOM05D004979 ORTHO05D006190 5.1e-240 834.3 522 73.8
QL03p011287 Quercus lobata HOM05D004979 ORTHO05D006190 6.7e-240 833.9 530 73.2
MD08G1246100 Malus domestica HOM05D004979 ORTHO05D006190 1.1e-239 833.2 513 75.4
Potri.013G000600 Populus trichocarpa HOM05D004979 ORTHO05D006190 4.3e-239 831.2 522 73.8
FAN06G2997 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.7e-238 828.2 543 71.5
Rhsim01G0213000 Rhododendron simsii HOM05D004979 ORTHO05D006190 3.7e-238 828.2 523 73.0
Atru.chr12.1512 Acer truncatum HOM05D004979 ORTHO05D006190 6.2e-238 827.4 518 73.6
CANSAT56G2810 Cannabis sativa HOM05D004979 ORTHO05D006190 6.2e-238 827.4 515 75.0
Sabra13G0000500 Salix brachista HOM05D004979 ORTHO05D006190 8.1e-238 827.0 536 72.8
ECA234G3247 Erigeron canadensis HOM05D004979 ORTHO05D006190 3.1e-237 825.1 497 77.9
Sed0004859 Sechium edule HOM05D004979 ORTHO05D006190 5.3e-237 824.3 521 73.3
MD15G1441300 Malus domestica HOM05D004979 ORTHO05D006190 7.6e-236 820.5 513 74.9
TWI60G1029 Tripterygium wilfordii HOM05D004979 ORTHO05D006190 1.3e-235 819.7 518 72.8
Eucgr.I02672 Eucalyptus grandis HOM05D004979 ORTHO05D006190 3.2e-234 815.1 517 72.3
Medtr1g110490 Medicago truncatula HOM05D004979 ORTHO05D006190 3.2e-234 815.1 518 70.8
TPR.G18815 Trifolium pratense HOM05D004979 ORTHO05D006190 7.1e-234 813.9 518 71.0
TPR.G33173 Trifolium pratense HOM05D004979 ORTHO05D006190 9.3e-234 813.5 518 71.0
Aqoxy1G02435 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 1.6e-233 812.8 520 72.5
Lalb_Chr04g0254641 Lupinus albus HOM05D004979 ORTHO05D006190 1.6e-233 812.8 518 71.2
Glyma.10G273100 Glycine max HOM05D004979 ORTHO05D006190 2.1e-233 812.4 519 71.9
HanXRQChr11g0327151 Helianthus annuus HOM05D004979 ORTHO05D006190 2.1e-233 812.4 469 80.6
Psat6g226240 Pisum sativum HOM05D004979 ORTHO05D006190 2.1e-233 812.4 515 71.8
arahy.Tifrunner.gnm1.ann1.4I4LKP Arachis hypogaea HOM05D004979 ORTHO05D006190 1.0e-232 810.1 518 71.4
Ciclev10028175m.g Citrus clementina HOM05D004979 ORTHO05D006190 1.3e-232 809.7 523 70.7
MELO3C019579.2 Cucumis melo HOM05D004979 ORTHO05D006190 1.8e-232 809.3 520 72.1
Thecc.05G331000 Theobroma cacao HOM05D004979 ORTHO05D006190 1.8e-232 809.3 514 72.8
CsaV3_6G013140 Cucumis sativus L. HOM05D004979 ORTHO05D006190 3.9e-232 808.1 521 72.2
Glyma.20G116900 Glycine max HOM05D004979 ORTHO05D006190 1.1e-231 806.6 519 71.1
THA.LOC104816839 Tarenaya hassleriana HOM05D004979 ORTHO05D006190 7.4e-231 803.9 516 72.1
Hund05397 Selenicereus undatus HOM05D004979 ORTHO05D006190 9.6e-231 803.5 490 75.1
AL1G67180 Arabidopsis lyrata HOM05D004979 ORTHO05D006190 4.8e-230 801.2 520 69.0
Thhalv10023409m.g Eutrema salsugineum HOM05D004979 ORTHO05D006190 6.3e-230 800.8 516 70.3
VMungo0720G1588 Vigna mungo HOM05D004979 ORTHO05D006190 6.3e-230 800.8 519 70.1
CARHR054720 Cardamine hirsuta HOM05D004979 ORTHO05D006190 8.2e-230 800.4 514 71.2
AT1G57600 Arabidopsis thaliana HOM05D004979 ORTHO05D006190 2.4e-229 798.9 516 70.0
Lj5g0020513 Lotus japonicus HOM05D004979 ORTHO05D006190 2.4e-229 798.9 509 71.7
Nitab4.5_0000081g0190 Nicotiana tabacum HOM05D004979 ORTHO05D006190 4.5e-228 794.7 518 73.2
PSO357G0276 Papaver somniferum HOM05D004979 ORTHO05D006190 5.9e-228 794.3 522 70.3
Carub.0002s0703 Capsella rubella HOM05D004979 ORTHO05D006190 7.6e-228 793.9 516 70.2
PSO170G1924 Papaver somniferum HOM05D004979 ORTHO05D006190 1.7e-227 792.7 521 70.1
Phvul.007G028500 Phaseolus vulgaris HOM05D004979 ORTHO05D006190 3.6e-225 785.0 519 69.6
arahy.Tifrunner.gnm1.ann1.Q958TZ Arachis hypogaea HOM05D004979 ORTHO05D006190 3.9e-224 781.6 576 64.4
Gohir.A13G003700 Gossypium hirsutum HOM05D004979 ORTHO05D006190 3.9e-224 781.6 514 69.8
Sp2g05910 Schrenkiella parvula HOM05D004979 ORTHO05D006190 3.9e-224 781.6 517 69.8
SpUn0028_0030 Schrenkiella parvula HOM05D004979 ORTHO05D006190 3.9e-224 781.6 517 69.8
Gohir.D13G003600 Gossypium hirsutum HOM05D004979 ORTHO05D006190 6.7e-224 780.8 514 70.2
BcaB07g31145 Brassica carinata HOM05D004979 ORTHO05D006190 4.3e-223 778.1 517 69.2
BolC9t55284H Brassica oleracea HOM05D004979 ORTHO05D006190 9.7e-223 776.9 517 69.4
BraA09t37507Z Brassica rapa HOM05D004979 ORTHO05D006190 9.7e-223 776.9 517 69.4
Gorai.013G003500 Gossypium raimondii HOM05D004979 ORTHO05D006190 9.7e-223 776.9 515 70.3
BcaC04g22085 Brassica carinata HOM05D004979 ORTHO05D006190 4.8e-222 774.6 517 69.1
unitig_22.g6127 Utricularia gibba HOM05D004979 ORTHO05D006190 8.2e-222 773.9 566 64.5
SGA_v2.0_scaffold279G46769 Striga asiatica HOM05D004979 ORTHO05D006190 1.2e-220 770.0 529 70.5
Peaxi162Scf00212g00515 Petunia axillaris HOM05D004979 ORTHO05D006190 1.9e-218 762.7 518 71.4
C09p23650 Brassica napus HOM05D004979 ORTHO05D006190 5.5e-218 761.1 541 66.0
A09p18870 Brassica napus HOM05D004979 ORTHO05D006190 7.2e-218 760.8 542 66.1
AUR62014845 Chenopodium quinoa HOM05D004979 ORTHO05D006190 7.9e-217 757.3 526 66.9
Lj4g0015757 Lotus japonicus HOM05D004979 ORTHO05D006190 9.7e-215 750.4 473 72.1
Os05g0144000 Oryza sativa ssp. japonica HOM05D004979 ORTHO05D006190 6.9e-213 744.2 519 66.3
Duzib114G0072 Durio zibethinus HOM05D004979 ORTHO05D006190 1.0e-211 740.3 510 69.6
TAR636G2920 Trochodendron aralioides HOM05D004979 ORTHO05D006190 9.4e-210 733.8 441 77.1
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 2.1e-209 732.6 694 54.3
Zm00001eb108680 Zea mays HOM05D004979 ORTHO05D006190 3.3e-207 725.3 518 64.3
Aa31LG2G11270 Aethionema arabicum HOM05D004979 ORTHO05D006190 1.7e-206 723.0 521 66.0
vmacro22232 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 1.7e-206 723.0 552 64.7
ATR0730G180 Amborella trichopoda HOM05D004979 ORTHO05D006190 4.1e-205 718.4 518 64.1
Lj9A238G55 Lonicera japonica HOM05D004979 ORTHO05D006190 1.5e-202 709.9 502 68.9
Sc05g0004380 Simmondsia chinensis HOM05D004979 ORTHO05D006190 4.0e-200 701.8 435 73.6
SEGI_04903 Sequoiadendron giganteum HOM05D004979 ORTHO05D006190 2.6e-199 699.1 529 61.1
Nitab4.5_0002303g0020 Nicotiana tabacum HOM05D004979 ORTHO05D006190 9.7e-199 697.2 518 66.2
Lsat_1_v5_gn_5_7121 Lactuca sativa HOM05D004979 ORTHO05D006190 1.8e-197 693.0 494 68.6
FAN23G0202 Fragaria x ananassa HOM05D004979 ORTHO05D006190 7.0e-197 691.0 522 64.8
Haze_12430 Corylus avellana HOM05D004979 ORTHO05D006190 5.0e-195 684.9 586 59.4
Prupe.1G583400 Prunus persica HOM05D004979 ORTHO05D006190 8.5e-195 684.1 397 78.1
FAN03G1290 Fragaria x ananassa HOM05D004979 ORTHO05D006190 4.2e-194 681.8 578 60.0
FvH4_7g05560 Fragaria vesca HOM05D004979 ORTHO05D006190 6.3e-190 667.9 391 76.7
HPP92_023772 Vanilla planifolia HOM05D004979 ORTHO05D006190 3.4e-175 619.0 420 66.0
Nn7g38157 Nelumbo nucifera HOM05D004979 ORTHO05D006190 2.2e-174 616.3 494 61.3
Mapoly0050s0014 Marchantia polymorpha HOM05D004979 ORTHO05D006190 1.2e-169 600.5 518 54.6
Pp3c2_38270 Physcomitrium patens HOM05D004979 ORTHO05D006190 2.9e-166 589.3 533 54.4
GSVIVG01007211001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.9e-165 586.6 363 74.1
SalBow5G4822 Salvia bowleyana HOM05D004979 ORTHO05D006190 3.3e-162 575.9 335 77.6
FAN10G2429 Fragaria x ananassa HOM05D004979 ORTHO05D006190 7.3e-154 548.1 525 54.3
GSVIVG01006954001 Vitis vinifera HOM05D004979 ORTHO05D006190 4.7e-153 545.4 307 80.1
SMO145G0201 Selaginella moellendorffii HOM05D004979 ORTHO05D006190 1.4e-152 543.9 506 54.0
DCAR_006591 Daucus carota HOM05D004979 ORTHO05D006190 1.5e-151 540.4 518 52.9
SalBow3G2171 Salvia bowleyana HOM05D004979 ORTHO05D006190 7.1e-149 531.6 351 70.4
Rhsim04G0165200 Rhododendron simsii HOM05D004979 ORTHO05D006190 6.4e-142 508.4 358 67.9
Lj5C315T9 Lonicera japonica HOM05D004979 ORTHO05D006190 3.2e-141 506.1 283 79.9
CBR_g16989 Chara braunii HOM05D004979 ORTHO05D006190 2.9e-134 483.0 549 44.3
AagrBONN_evm.TU.Sc2ySwM_344.2018 Anthoceros agrestis HOM05D004979 ORTHO05D006190 1.1e-133 481.1 435 53.3
AUR62017041 Chenopodium quinoa HOM05D004979 ORTHO05D006190 1.8e-128 463.8 342 64.3
GSVIVG01002014001 Vitis vinifera HOM05D004979 ORTHO05D006190 8.4e-126 454.9 252 80.6
Sopen04g025050 Solanum pennellii HOM05D004979 ORTHO05D006190 1.5e-114 417.5 231 82.3
COL.COLO4_28214 Corchorus olitorius HOM05D004979 ORTHO05D006190 2.2e-113 413.7 286 68.5
Hma1.2p1_0759F.1_g213770 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 1.8e-112 410.6 228 80.3
Hma1.2p1_0759F.1_g213813 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 1.8e-112 410.6 228 80.3
Ca_17455_v3 Cicer arietinum L. HOM05D004979 ORTHO05D006190 5.1e-107 392.5 228 75.9
GSVIVG01007210001 Vitis vinifera HOM05D004979 ORTHO05D006190 3.1e-88 330.1 211 72.5
GSVIVG01007430001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.6e-87 327.8 208 73.1
Dinv22420 Davidia involucrata HOM05D004979 ORTHO05D006190 7.7e-87 325.5 527 38.9
Cpa.g.sc46.4 Carica papaya HOM05D004979 ORTHO05D006190 2.4e-80 303.9 166 81.3
CAN.G1164.35 Capsicum annuum HOM05D004979 ORTHO05D006190 4.5e-71 273.1 171 74.9
Cpa.g.sc46.2 Carica papaya HOM05D004979 ORTHO05D006190 1.3e-70 271.6 240 58.8
Cre14.g617150 Chlamydomonas reinhardtii HOM05D004979 ORTHO05D006190 1.3e-70 271.6 531 34.1
Cfa022844 Carpinus fangiana HOM05D004979 ORTHO05D006190 1.9e-69 267.7 567 31.6
PRCOL_00000039 Prasinoderma coloniale HOM05D004979 ORTHO05D006190 2.1e-68 264.2 556 32.4
MCO11G558 Micromonas commoda HOM05D004979 ORTHO05D006190 3.0e-67 260.4 536 34.3
Actinidia01657 Actinidia chinensis HOM05D004979 ORTHO05D006190 3.4e-66 256.9 374 43.3
HanXRQChr14g0439781 Helianthus annuus HOM05D004979 ORTHO05D006190 7.3e-61 239.2 195 59.5
SHI20228 Sapria himalayana HOM05D004979 ORTHO05D006190 1.9e-53 214.5 262 45.0
DCAR_032148 Daucus carota HOM05D004979 ORTHO05D006190 7.0e-48 196.1 336 36.3
ClCG03G002030 Citrullus lanatus HOM05D004979 ORTHO05D006190 3.5e-47 193.7 163 63.8
Lsat_1_v5_gn_8_74721 Lactuca sativa HOM05D004979 ORTHO05D006190 2.1e-36 157.9 85 77.6
GSVIVG01004371001 Vitis vinifera HOM05D004979 ORTHO05D006190 7.6e-34 149.4 103 74.8
MBI07_g39750_MAGBIO Magnolia biondii HOM05D004979 ORTHO05D006190 8.4e-33 146.0 107 65.4
Lsat_1_v5_gn_8_74741 Lactuca sativa HOM05D004979 ORTHO05D006190 1.9e-32 144.8 102 70.6
Actinidia27722 Actinidia chinensis HOM05D004979 ORTHO05D006190 3.5e-31 140.6 196 42.3
CDE04G1277 Ceratophyllum demersum HOM05D004979 ORTHO05D006190 1.3e-30 138.7 99 64.6
QL03p011256 Quercus lobata HOM05D004979 ORTHO05D006190 3.6e-28 130.6 82 72.0
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 1.8e-27 128.3 119 51.3
FAN19G1386 Fragaria x ananassa HOM05D004979 ORTHO05D006190 4.2e-24 117.1 92 60.9
Rhsim05G0125000 Rhododendron simsii HOM05D004979 ORTHO05D006190 1.9e-21 108.2 270 32.2
Aqoxy2G02599 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 4.3e-13 80.5 41 73.2
AagrBONN_evm.TU.Sc2ySwM_117.715 Anthoceros agrestis HOM05D004979 ORTHO05D006190 3.7e-12 77.4 100 46.0
SHI20227 Sapria himalayana HOM05D004979 ORTHO05D006190 4.9e-09 67.0 51 64.7
Sc05g0003730 Simmondsia chinensis HOM05D004979 ORTHO05D006190 6.7e-06 56.6 80 38.8
CBR_g72775 Chara braunii HOM05D004979 ORTHO05D132771 8.7e-06 56.2 194 27.3


User provided reference genes

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