Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 7.8e-113 411.0 296 100.0
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 4.5e-84 315.5 298 68.8
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 2.4e-82 309.7 295 67.5
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 5.4e-82 308.5 302 65.9
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 1.2e-81 307.4 302 65.9
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 1.9e-79 300.1 297 80.5
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 2.5e-79 299.7 301 66.4
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 3.3e-79 299.3 302 78.1
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 4.3e-79 298.9 314 61.1
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 5.6e-79 298.5 302 56.3
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 7.4e-79 298.1 300 66.3
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 2.1e-78 296.6 298 72.1
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 2.1e-78 296.6 299 80.3
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 2.8e-78 296.2 299 64.5
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 6.2e-78 295.0 316 64.2
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 4.0e-77 292.4 309 63.4
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 4.0e-77 292.4 305 58.0
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 6.9e-77 291.6 300 66.7
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 1.2e-76 290.8 299 63.9
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 1.5e-76 290.4 299 64.2
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 1.5e-76 290.4 297 65.3
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 4.5e-76 288.9 295 76.6
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 9.9e-76 287.7 332 64.2
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.2e-75 286.6 302 73.8
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 2.9e-75 286.2 306 64.4
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 3.8e-75 285.8 298 55.0
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 6.4e-75 285.0 301 59.5
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 6.4e-75 285.0 306 67.3
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 8.4e-75 284.6 305 63.0
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 1.1e-74 284.3 300 61.0
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.4e-74 283.9 306 67.0
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.4e-74 283.1 306 63.4
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 2.4e-74 283.1 273 67.0
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 2.4e-74 283.1 309 58.9
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 4.2e-74 282.3 301 56.8
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 5.5e-74 282.0 308 74.4
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 7.1e-74 281.6 305 60.3
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 9.3e-74 281.2 309 60.5
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 1.2e-73 280.8 305 61.0
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 1.0e-72 277.7 305 56.7
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 1.8e-72 276.9 296 58.8
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 2.3e-72 276.6 303 59.7
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 2.3e-72 276.6 300 57.0
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 3.0e-72 276.2 307 59.3
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 3.9e-72 275.8 296 53.4
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 3.9e-72 275.8 301 61.1
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 8.7e-72 274.6 295 76.6
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 2.5e-71 273.1 275 68.4
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 4.3e-71 272.3 298 59.7
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 4.3e-71 272.3 293 60.8
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 7.4e-71 271.6 305 61.6
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 7.4e-71 271.6 341 58.7
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 9.6e-71 271.2 295 52.9
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 2.8e-70 269.6 248 71.4
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 3.7e-70 269.2 311 53.7
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 8.1e-70 268.1 304 56.9
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 8.1e-70 268.1 303 60.4
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 9.0e-69 264.6 306 54.9
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 9.0e-69 264.6 301 62.1
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 1.5e-68 263.8 300 70.0
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 1.5e-68 263.8 300 74.3
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 1.5e-68 263.8 300 74.3
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 5.8e-68 261.9 306 71.2
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 1.3e-67 260.8 306 56.2
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 2.2e-67 260.0 295 55.3
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 2.2e-67 260.0 310 71.0
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 2.2e-67 260.0 304 63.2
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 3.8e-67 259.2 312 70.5
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 4.9e-67 258.8 314 58.6
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 8.4e-67 258.1 300 53.0
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 5.5e-66 255.4 267 53.9
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 2.7e-65 253.1 301 59.5
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 4.6e-65 252.3 286 65.0
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 1.0e-64 251.1 302 69.2
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 3.0e-64 249.6 303 57.4
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 1.6e-62 243.8 303 49.2
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 3.7e-62 242.7 305 68.9
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 3.7e-62 242.7 298 48.3
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 6.3e-62 241.9 303 48.8
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 1.1e-61 241.1 307 55.4
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 1.8e-61 240.4 305 58.7
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 2.4e-61 240.0 298 57.7
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 2.0e-60 236.9 305 58.7
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 1.0e-59 234.6 305 57.4
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 1.0e-59 234.6 305 57.4
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 1.3e-59 234.2 341 56.9
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 2.2e-59 233.4 305 61.0
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 2.2e-59 233.4 305 61.0
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 2.2e-59 233.4 305 61.0
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 2.9e-59 233.0 195 64.6
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 2.9e-59 233.0 305 70.2
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 3.8e-59 232.6 302 67.5
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 6.5e-59 231.9 333 54.1
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 1.1e-58 231.1 305 66.2
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 5.5e-58 228.8 304 68.1
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 6.1e-57 225.3 296 70.6
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 3.9e-56 222.6 287 51.2
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 6.7e-56 221.9 171 66.7
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 2.2e-54 216.9 295 49.2
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 3.7e-54 216.1 303 53.8
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 6.3e-54 215.3 288 52.1
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 8.2e-54 214.9 283 67.1
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 7.7e-52 208.4 343 48.1
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 1.0e-51 208.0 273 68.9
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 1.3e-51 207.6 274 56.6
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 1.1e-50 204.5 309 53.7
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 7.2e-50 201.8 271 57.9
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.8e-48 197.2 189 55.0
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 2.4e-37 160.2 180 48.9
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 4.1e-37 159.5 158 72.8
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 4.2e-34 149.4 189 47.6
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 1.4e-32 144.4 151 74.2
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 5.2e-32 142.5 79 86.1
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 3.3e-31 139.8 178 44.4
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 2.2e-27 127.1 75 80.0
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 6.1e-25 119.0 120 50.8
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 2.0e-23 114.0 260 36.2
PGSC0003DMG400018243 Solanum tuberosum HOM05D005826 ORTHO05D004357 3.4e-23 113.2 129 65.1
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 7.5e-23 112.1 137 46.7
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 8.0e-17 92.0 136 48.5
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 1.4e-16 91.3 121 48.8
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 8.8e-16 88.6 48 81.2
Migut.O00760 Erythranthe guttata HOM05D005826 ORTHO05D004357 1.2e-12 78.2 79 59.5
Oeu023421.1 Olea europaea HOM05D005826 ORTHO05D004357 4.5e-12 76.3 55 74.5
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 7.8e-12 75.5 47 70.2
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 2.3e-11 73.9 46 73.9
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 3.8e-11 73.2 47 68.1
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 4.3e-10 69.7 43 74.4
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 4.3e-10 69.7 43 74.4
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 2.3e-08 63.9 29 96.6
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 8.9e-08 62.0 59 54.2
CDE12G0861 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 1.5e-07 61.2 29 93.1


User provided reference genes

Program Settings