Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g35160 Coffea canephora HOM05D006340 ORTHO05D007568 6.5e-274 947.2 641 100.0
Dinv30898 Davidia involucrata HOM05D006340 ORTHO05D007568 1.7e-120 437.6 655 45.0
CSS0010691 Camellia sinensis var. sinensis HOM05D006340 ORTHO05D007568 1.6e-118 431.0 657 60.7
Actinidia16863 Actinidia chinensis HOM05D006340 ORTHO05D007568 5.2e-114 416.0 678 54.1
Haze_04056 Corylus avellana HOM05D006340 ORTHO05D007568 2.2e-112 410.6 653 61.6
QL03p014074 Quercus lobata HOM05D006340 ORTHO05D007568 4.2e-111 406.4 656 61.1
TAR362G0132 Trochodendron aralioides HOM05D006340 ORTHO05D007568 7.1e-111 405.6 658 60.5
Cfa006707 Carpinus fangiana HOM05D006340 ORTHO05D007568 1.5e-108 397.9 656 61.7
CAN.G1076.21 Capsicum annuum HOM05D006340 ORTHO05D007568 7.3e-108 395.6 665 60.0
Lju926C5T2 Lonicera japonica HOM05D006340 ORTHO05D007568 2.9e-104 383.6 650 58.3
Actinidia35518 Actinidia chinensis HOM05D006340 ORTHO05D007568 8.4e-104 382.1 651 59.3
Sabra13G0006900 Salix brachista HOM05D006340 ORTHO05D007568 5.4e-103 379.4 659 53.6
Nitab4.5_0001338g0100 Nicotiana tabacum HOM05D006340 ORTHO05D007568 6.6e-101 372.5 683 56.5
MBI18_g32031_MAGBIO Magnolia biondii HOM05D006340 ORTHO05D007568 1.1e-100 371.7 662 47.9
Hma1.2p1_0008F-1.1_g005560 Hydrangea macrophylla HOM05D006340 ORTHO05D007568 1.5e-100 371.3 656 59.0
vmacro01568 Vaccinium macrocarpon HOM05D006340 ORTHO05D007568 1.9e-100 370.9 658 51.8
CiPaw.07G030100 Carya illinoinensis HOM05D006340 ORTHO05D007568 3.6e-99 366.7 657 59.2
Potri.013G008200 Populus trichocarpa HOM05D006340 ORTHO05D007568 9.0e-98 362.1 651 57.9
Nitab4.5_0004525g0020 Nicotiana tabacum HOM05D006340 ORTHO05D007568 2.0e-97 360.9 654 58.4
Thecc.05G323700 Theobroma cacao HOM05D006340 ORTHO05D007568 3.4e-97 360.1 652 58.0
Lj5C328T5 Lonicera japonica HOM05D006340 ORTHO05D007568 4.9e-96 356.3 642 59.0
PGSC0003DMG400002763 Solanum tuberosum HOM05D006340 ORTHO05D007568 8.4e-96 355.5 666 59.3
GSVIVG01031248001 Vitis vinifera HOM05D006340 ORTHO05D007568 1.4e-95 354.8 658 58.4
Potri.005G013000 Populus trichocarpa HOM05D006340 ORTHO05D007568 1.9e-95 354.4 651 57.5
ClCG02G014860 Citrullus lanatus HOM05D006340 ORTHO05D007568 2.1e-94 350.9 659 47.0
Duzib177G0712 Durio zibethinus HOM05D006340 ORTHO05D007568 3.5e-94 350.1 656 57.5
Sopen01g044100 Solanum pennellii HOM05D006340 ORTHO05D007568 1.0e-93 348.6 669 59.3
Prupe.6G312400 Prunus persica HOM05D006340 ORTHO05D007568 8.7e-93 345.5 656 57.2
Rhsim11G0096500 Rhododendron simsii HOM05D006340 ORTHO05D007568 2.5e-92 344.0 648 55.7
Atru.chr2.357 Acer truncatum HOM05D006340 ORTHO05D007568 4.3e-92 343.2 663 58.1
Duzib128G1170 Durio zibethinus HOM05D006340 ORTHO05D007568 2.1e-91 340.9 648 56.8
TAR633G1326 Trochodendron aralioides HOM05D006340 ORTHO05D007568 8.1e-91 339.0 656 57.3
MBI19_g03242_MAGBIO Magnolia biondii HOM05D006340 ORTHO05D007568 6.9e-90 335.9 644 48.9
Nn3g21728 Nelumbo nucifera HOM05D006340 ORTHO05D007568 6.9e-90 335.9 662 57.6
Ciclev10000538m.g Citrus clementina HOM05D006340 ORTHO05D007568 5.8e-89 332.8 657 57.5
TWI36G0703 Tripterygium wilfordii HOM05D006340 ORTHO05D007568 7.6e-89 332.4 661 57.5
Cpa.g.sc48.167 Carica papaya HOM05D006340 ORTHO05D007568 3.8e-88 330.1 655 56.2
DCAR_025287 Daucus carota HOM05D006340 ORTHO05D007568 8.4e-88 328.9 656 55.8
Manes.09G177400 Manihot esculenta HOM05D006340 ORTHO05D007568 9.3e-87 325.5 648 50.6
Oeu053742.1 Olea europaea HOM05D006340 ORTHO05D007568 1.6e-86 324.7 660 55.5
MELO3C004178.2 Cucumis melo HOM05D006340 ORTHO05D007568 2.1e-86 324.3 647 50.4
Lsat_1_v5_gn_5_40480 Lactuca sativa HOM05D006340 ORTHO05D007568 2.1e-86 324.3 649 55.8
CiPaw.08G154900 Carya illinoinensis HOM05D006340 ORTHO05D007568 1.8e-85 321.2 656 56.6
COL.COLO4_05545 Corchorus olitorius HOM05D006340 ORTHO05D007568 3.0e-85 320.5 655 56.6
MD00G1208300 Malus domestica HOM05D006340 ORTHO05D007568 6.7e-85 319.3 650 55.5
Sed0017369 Sechium edule HOM05D006340 ORTHO05D007568 6.7e-85 319.3 648 56.0
Oeu052936.1 Olea europaea HOM05D006340 ORTHO05D007568 1.5e-84 318.2 649 55.2
HanXRQChr11g0324231 Helianthus annuus HOM05D006340 ORTHO05D007568 3.3e-84 317.0 652 57.1
Dinv24462 Davidia involucrata HOM05D006340 ORTHO05D007568 4.8e-83 313.2 491 41.3
ECA246G2180 Erigeron canadensis HOM05D006340 ORTHO05D007568 1.1e-82 312.0 638 57.4
CANSAT54G2981 Cannabis sativa HOM05D006340 ORTHO05D007568 1.4e-82 311.6 651 55.6
Sed0011043 Sechium edule HOM05D006340 ORTHO05D007568 1.8e-82 311.2 653 55.6
CsaV3_2G007150 Cucumis sativus L. HOM05D006340 ORTHO05D007568 2.4e-82 310.8 633 55.9
DCAR_029344 Daucus carota HOM05D006340 ORTHO05D007568 6.9e-82 309.3 643 46.8
AUR62006742 Chenopodium quinoa HOM05D006340 ORTHO05D007568 1.2e-81 308.5 654 54.7
Aqoxy2G02721 Aquilegia oxysepala HOM05D006340 ORTHO05D007568 2.6e-81 307.4 655 55.3
Gohir.A08G205400 Gossypium hirsutum HOM05D006340 ORTHO05D007568 1.3e-80 305.1 647 55.0
Gohir.D11G284300 Gossypium hirsutum HOM05D006340 ORTHO05D007568 1.7e-80 304.7 658 55.3
PSO761G0363 Papaver somniferum HOM05D006340 ORTHO05D007568 4.2e-79 300.1 658 55.2
AUR62000387 Chenopodium quinoa HOM05D006340 ORTHO05D007568 5.5e-79 299.7 656 54.9
Gorai.004G236300 Gossypium raimondii HOM05D006340 ORTHO05D007568 2.1e-78 297.7 648 54.5
Gorai.007G307200 Gossypium raimondii HOM05D006340 ORTHO05D007568 2.7e-78 297.4 649 55.5
Glyma.10G146700 Glycine max HOM05D006340 ORTHO05D007568 7.9e-78 295.8 656 55.2
MD12G1205300 Malus domestica HOM05D006340 ORTHO05D007568 3.9e-77 293.5 659 54.0
Phvul.007G201700 Phaseolus vulgaris HOM05D006340 ORTHO05D007568 5.1e-77 293.1 650 54.5
Sabra05G0021400 Salix brachista HOM05D006340 ORTHO05D007568 4.3e-76 290.0 693 35.2
Glyma.20G096700 Glycine max HOM05D006340 ORTHO05D007568 1.3e-75 288.5 651 54.8
Ca_10176_v3 Cicer arietinum L. HOM05D006340 ORTHO05D007568 4.8e-75 286.6 656 53.5
VMungo0720G2454 Vigna mungo HOM05D006340 ORTHO05D007568 1.5e-73 281.6 644 54.5
Medtr1g084120 Medicago truncatula HOM05D006340 ORTHO05D007568 3.4e-73 280.4 655 50.4
Gohir.D08G222500 Gossypium hirsutum HOM05D006340 ORTHO05D007568 7.7e-73 279.3 648 53.5
TPR.G2586 Trifolium pratense HOM05D006340 ORTHO05D007568 8.5e-72 275.8 670 52.5
arahy.Tifrunner.gnm1.ann1.35WTTC Arachis hypogaea HOM05D006340 ORTHO05D007568 2.3e-69 267.7 672 53.6
PSO210G6591 Papaver somniferum HOM05D006340 ORTHO05D007568 3.0e-69 267.3 558 59.5
PGR031G1700 Punica granatum HOM05D006340 ORTHO05D007568 8.8e-69 265.8 653 55.1
Migut.N00937 Erythranthe guttata HOM05D006340 ORTHO05D007568 5.7e-68 263.1 664 49.8
arahy.Tifrunner.gnm1.ann1.31L8TN Arachis hypogaea HOM05D006340 ORTHO05D007568 7.4e-68 262.7 674 52.8
Peaxi162Scf01061g00014 Petunia axillaris HOM05D006340 ORTHO05D007568 9.7e-68 262.3 522 36.8
Eucgr.H03294 Eucalyptus grandis HOM05D006340 ORTHO05D007568 2.8e-67 260.8 651 52.5
ATR0693G206 Amborella trichopoda HOM05D006340 ORTHO05D007568 3.7e-67 260.4 684 51.6
SGA_v2.0_scaffold5G02892 Striga asiatica HOM05D006340 ORTHO05D007568 1.4e-66 258.5 653 45.5
Lj5g0007706 Lotus japonicus HOM05D006340 ORTHO05D007568 3.1e-66 257.3 653 53.1
Glyma.19G228200 Glycine max HOM05D006340 ORTHO05D007568 2.0e-65 254.6 651 53.3
RcHm_v2.0_Chr3g0457201 Rosa chinensis HOM05D006340 ORTHO05D007568 3.4e-65 253.8 683 51.5
Hund07311 Selenicereus undatus HOM05D006340 ORTHO05D007568 3.4e-65 253.8 643 51.9
Ah.06g195990 Amaranthus hybridus HOM05D006340 ORTHO05D007568 1.1e-63 248.8 658 51.4
MSTRG.27938 Avicennia marina HOM05D006340 ORTHO05D007568 1.4e-63 248.4 417 38.8
arahy.Tifrunner.gnm1.ann1.Y7QP4L Arachis hypogaea HOM05D006340 ORTHO05D007568 7.2e-63 246.1 645 51.5
Lalb_Chr02g0147781 Lupinus albus HOM05D006340 ORTHO05D007568 7.2e-63 246.1 653 50.2
Phvul.001G224800 Phaseolus vulgaris HOM05D006340 ORTHO05D007568 3.6e-62 243.8 649 52.1
FAN14G3207 Fragaria x ananassa HOM05D006340 ORTHO05D007568 6.1e-62 243.0 678 51.5
Zm00001eb130130 Zea mays HOM05D006340 ORTHO05D007568 6.1e-62 243.0 651 45.0
FvH4_6g07501 Fragaria vesca HOM05D006340 ORTHO05D007568 1.8e-61 241.5 678 51.3
Zm00001eb340330 Zea mays HOM05D006340 ORTHO05D007568 3.9e-61 240.4 645 50.1
Solyc01g100600.4 Solanum lycopersicum HOM05D006340 ORTHO05D007568 1.5e-60 238.4 503 48.5
EL10Ac4g09463 Beta vulgaris HOM05D006340 ORTHO05D007568 3.3e-60 237.3 655 50.5
FAN02G1774 Fragaria x ananassa HOM05D006340 ORTHO05D007568 3.3e-60 237.3 678 51.2
Glyma.03G231000 Glycine max HOM05D006340 ORTHO05D007568 3.3e-60 237.3 653 51.9
VMungo1383G0056 Vigna mungo HOM05D006340 ORTHO05D007568 7.4e-60 236.1 649 50.5
Os01g0300900 Oryza sativa ssp. japonica HOM05D006340 ORTHO05D007568 3.7e-59 233.8 654 46.5
THA.LOC104816894 Tarenaya hassleriana HOM05D006340 ORTHO05D007568 4.5e-57 226.9 646 45.0
Sabra05G0020800 Salix brachista HOM05D006340 ORTHO05D007568 5.2e-53 213.4 343 63.8
HPP92_005420 Vanilla planifolia HOM05D006340 ORTHO05D007568 2.8e-51 207.6 656 50.8
Psat6g152600 Pisum sativum HOM05D006340 ORTHO05D007568 7.7e-49 199.5 507 41.2
arahy.Tifrunner.gnm1.ann1.9H9EE5 Arachis hypogaea HOM05D006340 ORTHO05D007568 2.2e-48 198.0 648 40.1
Sabra05G0009200 Salix brachista HOM05D006340 ORTHO05D007568 1.7e-43 181.8 203 83.7
SalBow3G0642 Salvia bowleyana HOM05D006340 ORTHO05D007568 7.0e-42 176.4 326 38.0
Sabra05G0020900 Salix brachista HOM05D006340 ORTHO05D007568 5.2e-37 160.2 263 39.5
FAN09G1774 Fragaria x ananassa HOM05D006340 ORTHO05D007568 8.8e-37 159.5 522 41.2
MSTRG.27937 Avicennia marina HOM05D006340 ORTHO05D007568 3.1e-34 151.0 199 74.9
Dinv24463 Davidia involucrata HOM05D006340 ORTHO05D007568 2.3e-32 144.8 175 85.7
CDE02G0367 Ceratophyllum demersum HOM05D006340 ORTHO05D007568 3.8e-32 144.1 633 41.7
Sc16g0009070 Simmondsia chinensis HOM05D006340 ORTHO05D007568 1.6e-30 138.7 499 41.3
Gohir.A11G274100 Gossypium hirsutum HOM05D006340 ORTHO05D007568 3.6e-30 137.5 498 40.4
PSO541G0443 Papaver somniferum HOM05D006340 ORTHO05D007568 4.7e-30 137.1 267 40.4
unitig_52.g17414 Utricularia gibba HOM05D006340 ORTHO05D007568 8.9e-29 132.9 340 39.7
SMO115G0101 Selaginella moellendorffii HOM05D006340 ORTHO05D007568 1.2e-25 122.5 587 33.2
CDE08G0055 Ceratophyllum demersum HOM05D006340 ORTHO05D007568 2.5e-23 114.8 479 37.2
Sabra05G0022400 Salix brachista HOM05D006340 ORTHO05D007568 1.6e-22 112.1 229 34.5
FAN05G4753 Fragaria x ananassa HOM05D006340 ORTHO05D007568 3.1e-21 107.8 405 43.5
THA.LOC104824492 Tarenaya hassleriana HOM05D006340 ORTHO05D007568 5.8e-20 103.6 64 70.3
AagrBONN_evm.TU.Sc2ySwM_117.2646 Anthoceros agrestis HOM05D001137 ORTHO05D007568 2.2e-11 75.1 194 27.3
MBI18_g03639_MAGBIO Magnolia biondii HOM05D006340 ORTHO05D007568 2.9e-11 74.7 73 54.8
ECA169G0006 Erigeron canadensis HOM05D006340 ORTHO05D007568 2.7e-09 68.2 55 61.8
arahy.Tifrunner.gnm1.ann1.IB7YTW Arachis hypogaea HOM05D001137 ORTHO05D001967 1.9e-07 62.0 184 22.8
MBI16_g10850_MAGBIO Magnolia biondii HOM05D003320 ORTHO05D003941 7.3e-07 60.1 46 52.2
ATR0706G044 Amborella trichopoda HOM05D001137 ORTHO05D001967 9.5e-07 59.7 194 24.2
AagrBONN_evm.TU.Sc2ySwM_23.4 Anthoceros agrestis HOM05D001137 ORTHO05D007568 9.5e-07 59.7 181 24.9
arahy.Tifrunner.gnm1.ann1.PM4BFB Arachis hypogaea HOM05D001137 ORTHO05D001967 1.2e-06 59.3 184 22.3
MELO3C004231.2 Cucumis melo HOM05D001137 ORTHO05D001967 1.2e-06 59.3 193 23.8
CsaV3_2G006540 Cucumis sativus L. HOM05D001137 ORTHO05D001967 1.2e-06 59.3 193 23.8
SGA_v2.0_scaffold80G25790 Striga asiatica HOM05D001137 ORTHO05D001967 1.2e-06 59.3 187 22.5
unitig_746.g26860 Utricularia gibba HOM05D001137 ORTHO05D001967 1.2e-06 59.3 190 29.5
Migut.N01989 Erythranthe guttata HOM05D001137 ORTHO05D001967 1.6e-06 58.9 189 22.2
PSO017G6858 Papaver somniferum HOM05D003320 ORTHO05D003941 1.6e-06 58.9 46 47.8
PSO478G2958 Papaver somniferum HOM05D003320 ORTHO05D003941 1.6e-06 58.9 46 47.8
SMO201G0046 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 2.8e-06 58.2 46 47.8
HanXRQChr16g0502481 Helianthus annuus HOM05D003320 ORTHO05D003941 3.6e-06 57.8 48 43.8
Sed0022056 Sechium edule HOM05D001137 ORTHO05D001967 3.6e-06 57.8 193 23.3
SMO228G0070 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 3.6e-06 57.8 46 47.8
CSS0049494 Camellia sinensis var. sinensis HOM05D003320 ORTHO05D003941 4.7e-06 57.4 46 47.8
COL.COLO4_32891 Corchorus olitorius HOM05D001137 ORTHO05D001967 4.7e-06 57.4 196 23.5
Lsat_1_v5_gn_4_110741 Lactuca sativa HOM05D003320 ORTHO05D003941 4.7e-06 57.4 47 44.7
Solyc01g099350.3 Solanum lycopersicum HOM05D001137 ORTHO05D001967 4.7e-06 57.4 193 23.3
VMungo0540G2300 Vigna mungo HOM05D001137 ORTHO05D001967 4.7e-06 57.4 191 23.0
CSS0013666 Camellia sinensis var. sinensis HOM05D003320 ORTHO05D003941 6.2e-06 57.0 46 50.0
CAN.G1034.50 Capsicum annuum HOM05D001137 ORTHO05D001967 6.2e-06 57.0 193 23.8
CBR_g42082 Chara braunii HOM05D003320 ORTHO05D003941 6.2e-06 57.0 47 42.6
Lj5A442G8 Lonicera japonica HOM05D001137 ORTHO05D001967 6.2e-06 57.0 187 22.5
Potri.008G031200 Populus trichocarpa HOM05D001137 ORTHO05D001967 6.2e-06 57.0 48 54.2
Sabra08G0020600 Salix brachista HOM05D001137 ORTHO05D001967 6.2e-06 57.0 48 54.2
SMO022G0002 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 6.2e-06 57.0 48 45.8
SMO199G0080 Selaginella moellendorffii HOM05D003320 ORTHO05D011006 6.2e-06 57.0 46 47.8
SMO274G0045 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 6.2e-06 57.0 46 47.8
Sopen01g042910 Solanum pennellii HOM05D001137 ORTHO05D001967 6.2e-06 57.0 193 23.3
TPR.G33177 Trifolium pratense HOM05D001137 ORTHO05D001967 6.2e-06 57.0 191 24.1
Aa31LG4G4440 Aethionema arabicum HOM05D003320 ORTHO05D003941 8.1e-06 56.6 52 42.3
MSTRG.27988 Avicennia marina HOM05D001137 ORTHO05D001967 8.1e-06 56.6 190 23.2
Ca_05808_v3 Cicer arietinum L. HOM05D001137 ORTHO05D001967 8.1e-06 56.6 191 23.0
Cc02_g31050 Coffea canephora HOM05D001137 ORTHO05D001967 8.1e-06 56.6 193 21.8
Migut.L00877 Erythranthe guttata HOM05D003320 ORTHO05D003941 8.1e-06 56.6 46 47.8
Nn3g21409 Nelumbo nucifera HOM05D001137 ORTHO05D001967 8.1e-06 56.6 196 22.4
Sed0004131 Sechium edule HOM05D001137 ORTHO05D001967 8.1e-06 56.6 193 22.8


User provided reference genes

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