Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 2.7e-224 781.6 369 100.0
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 2.6e-166 589.0 362 76.2
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 2.6e-166 589.0 361 73.7
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 3.4e-166 588.6 360 75.3
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 4.4e-166 588.2 364 75.5
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 7.6e-166 587.4 359 74.7
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 1.3e-165 586.6 359 74.9
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 8.4e-165 583.9 360 73.9
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 2.4e-164 582.4 359 73.0
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 5.4e-164 581.3 362 73.8
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 1.2e-163 580.1 360 71.7
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 4.3e-161 571.6 349 73.1
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 5.6e-161 571.2 363 71.9
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 1.2e-160 570.1 355 72.1
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 1.1e-159 567.0 355 71.5
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 1.8e-159 566.2 361 70.6
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 2.0e-158 562.8 344 73.8
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 2.2e-157 559.3 370 71.6
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 1.4e-156 556.6 355 70.1
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 1.2e-155 553.5 348 70.4
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 2.1e-155 552.7 447 60.6
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 2.7e-155 552.4 359 69.4
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 4.6e-155 551.6 363 69.1
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 6.0e-155 551.2 363 69.1
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 7.8e-155 550.8 359 71.3
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 6.6e-154 547.7 348 70.1
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 8.7e-154 547.4 358 70.4
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 1.1e-153 547.0 358 68.7
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 1.5e-153 546.6 353 70.3
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 5.6e-153 544.7 362 68.8
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.6e-152 543.1 360 68.6
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.6e-152 543.1 360 68.6
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 8.1e-152 540.8 343 70.6
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.1e-151 540.4 358 68.4
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 1.4e-151 540.0 366 66.4
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 1.4e-151 540.0 363 68.6
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 1.8e-151 539.7 356 68.3
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 1.8e-151 539.7 365 68.5
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 2.4e-151 539.3 353 68.3
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 2.4e-151 539.3 352 68.8
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 2.4e-151 539.3 361 65.9
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 3.1e-151 538.9 362 67.1
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 6.9e-151 537.7 329 71.1
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 9.0e-151 537.3 352 69.9
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 1.5e-150 536.6 357 67.2
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 2.6e-150 535.8 353 68.6
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 7.6e-150 534.3 367 67.3
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 2.2e-149 532.7 365 66.0
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 2.9e-149 532.3 362 65.5
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 3.8e-149 531.9 340 69.4
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 1.1e-148 530.4 358 68.7
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 1.9e-148 529.6 362 67.4
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 9.3e-148 527.3 357 67.5
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 1.2e-147 526.9 365 65.8
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 1.6e-147 526.6 357 65.5
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 2.1e-147 526.2 357 65.5
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 4.6e-147 525.0 363 65.3
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 1.8e-146 523.1 342 68.7
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 3.0e-146 522.3 402 61.7
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 3.0e-146 522.3 363 66.7
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 5.1e-146 521.5 318 73.3
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 5.1e-146 521.5 369 64.2
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 8.7e-146 520.8 318 73.3
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 8.7e-146 520.8 348 66.4
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 8.7e-146 520.8 357 64.4
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 1.1e-145 520.4 343 69.4
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 1.5e-145 520.0 357 64.4
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 1.5e-145 520.0 445 57.5
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 1.9e-145 519.6 352 66.8
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 1.9e-145 519.6 347 65.7
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 1.9e-145 519.6 318 73.0
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 2.5e-145 519.2 352 66.2
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 2.5e-145 519.2 311 72.3
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 3.3e-145 518.8 363 65.6
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 3.3e-145 518.8 344 66.6
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 1.3e-144 516.9 363 64.5
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 4.8e-144 515.0 362 65.7
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 4.8e-144 515.0 373 62.5
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 8.1e-144 514.2 341 68.0
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 1.1e-143 513.8 356 66.3
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 4.0e-143 511.9 343 65.6
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 5.3e-143 511.5 347 64.8
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 6.9e-143 511.1 345 66.1
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 9.0e-143 510.8 346 65.0
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 1.2e-142 510.4 359 64.3
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 1.5e-142 510.0 361 63.2
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 2.6e-142 509.2 343 65.3
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 2.6e-142 509.2 343 65.3
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 3.4e-142 508.8 343 65.9
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 7.6e-142 507.7 343 68.8
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 1.7e-141 506.5 358 63.7
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 2.9e-141 505.8 359 63.0
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 6.4e-141 504.6 363 62.0
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 6.4e-141 504.6 358 64.0
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 3.2e-140 502.3 358 63.1
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 3.5e-139 498.8 351 63.0
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 3.5e-139 498.8 348 69.0
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 1.0e-138 497.3 343 64.7
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 3.0e-138 495.7 359 62.1
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 1.1e-137 493.8 306 71.2
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 3.3e-137 492.3 350 66.3
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 4.2e-132 475.3 314 70.7
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 2.7e-131 472.6 361 60.9
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 3.9e-130 468.8 334 63.2
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 7.4e-129 464.5 357 61.6
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 9.7e-129 464.2 357 61.6
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 2.6e-126 456.1 356 63.5
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 3.4e-126 455.7 344 62.5
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 7.2e-124 448.0 347 60.8
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 2.3e-122 443.0 275 72.4
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 5.1e-122 441.8 275 72.0
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 4.3e-121 438.7 275 71.6
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 3.6e-115 419.1 267 70.0
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 9.1e-111 404.4 247 71.3
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 5.9e-110 401.7 315 63.5
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 8.5e-109 397.9 286 62.6
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 3.6e-107 392.5 353 53.8
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 8.0e-107 391.3 300 60.0
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.7e-96 357.1 228 67.5
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.8e-95 353.6 230 68.3
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 3.5e-94 349.4 250 62.4
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 1.5e-92 344.0 215 70.2
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 8.0e-91 338.2 336 47.6
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 5.7e-89 332.0 210 70.0
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 8.3e-88 328.2 353 47.3
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 1.6e-86 323.9 368 44.6
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 3.5e-86 322.8 339 48.1
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 7.2e-84 315.1 281 54.1
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.8e-82 310.5 334 47.9
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 4.0e-82 309.3 212 62.7
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 2.2e-80 303.5 304 48.0
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 6.6e-77 292.0 194 68.6
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 1.8e-74 283.9 171 71.9
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 2.6e-73 280.0 209 62.2
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.9e-71 273.9 203 63.1
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.5e-60 237.7 155 72.3
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 9.9e-57 224.9 244 45.1
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 2.4e-55 220.3 160 63.1
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 4.0e-50 203.0 144 65.3
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 1.1e-36 158.3 223 40.4
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 4.9e-32 142.9 104 62.5
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 7.1e-31 139.0 111 62.2
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 1.3e-29 134.8 98 65.3
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 7.4e-28 129.0 99 61.6
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 9.3e-23 112.1 102 47.1
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 3.8e-16 90.1 106 38.7


User provided reference genes

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