Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g34610 Coffea canephora HOM05D005552 ORTHO05D006743 0.0e+00 1149.0 578 100.0
Dinv39890 Davidia involucrata HOM05D005552 ORTHO05D006743 1.2e-247 859.8 574 73.9
Thecc.01G050800 Theobroma cacao HOM05D005552 ORTHO05D006743 2.0e-237 825.9 574 70.2
GSVIVG01003549001 Vitis vinifera HOM05D005552 ORTHO05D006743 1.7e-236 822.8 575 70.3
CiPaw.01G023200 Carya illinoinensis HOM05D005552 ORTHO05D006743 4.9e-236 821.2 574 69.3
CAN.G1273.15 Capsicum annuum HOM05D005552 ORTHO05D006743 6.4e-236 820.8 575 70.4
Oeu020899.1 Olea europaea HOM05D005552 ORTHO05D006743 8.3e-236 820.5 574 71.3
Cfa003976 Carpinus fangiana HOM05D005552 ORTHO05D006743 1.9e-235 819.3 574 70.4
Actinidia12065 Actinidia chinensis HOM05D005552 ORTHO05D006743 2.4e-235 818.9 574 70.9
COL.COLO4_11363 Corchorus olitorius HOM05D005552 ORTHO05D006743 4.1e-235 818.1 574 70.7
Gohir.D11G196500 Gossypium hirsutum HOM05D005552 ORTHO05D006743 3.5e-234 815.1 574 69.3
Duzib264G1173 Durio zibethinus HOM05D005552 ORTHO05D006743 1.0e-233 813.5 574 69.7
Gorai.007G210400 Gossypium raimondii HOM05D005552 ORTHO05D006743 1.0e-233 813.5 574 69.2
vmacro21371 Vaccinium macrocarpon HOM05D005552 ORTHO05D006743 6.6e-233 810.8 574 70.4
CSS0032711 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 7.3e-232 807.4 574 70.9
FAN26G2590 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.6e-231 806.2 575 68.7
FvH4_1g15480 Fragaria vesca HOM05D005552 ORTHO05D006743 2.8e-231 805.4 575 68.7
FAN28G0665 Fragaria x ananassa HOM05D005552 ORTHO05D006743 6.2e-231 804.3 575 68.3
QL06p042750 Quercus lobata HOM05D005552 ORTHO05D006743 1.1e-230 803.5 574 69.0
Sopen01g043680 Solanum pennellii HOM05D005552 ORTHO05D006743 1.4e-230 803.1 574 68.3
PGSC0003DMG400024733 Solanum tuberosum HOM05D005552 ORTHO05D006743 6.8e-230 800.8 574 68.3
Potri.001G361900 Populus trichocarpa HOM05D005552 ORTHO05D006743 1.5e-229 799.7 576 68.9
FAN19G0212 Fragaria x ananassa HOM05D005552 ORTHO05D006743 2.6e-229 798.9 575 67.8
Ciclev10025258m.g Citrus clementina HOM05D005552 ORTHO05D006743 3.4e-229 798.5 574 68.6
Solyc01g100190.4 Solanum lycopersicum HOM05D005552 ORTHO05D006743 4.4e-229 798.1 574 67.8
Nitab4.5_0002715g0120 Nicotiana tabacum HOM05D005552 ORTHO05D006743 3.7e-228 795.0 604 66.2
Lj4C139G4 Lonicera japonica HOM05D005552 ORTHO05D006743 8.3e-228 793.9 577 69.7
MD15G1279300 Malus domestica HOM05D005552 ORTHO05D006743 5.4e-227 791.2 575 67.5
Rhsim01G0119100 Rhododendron simsii HOM05D005552 ORTHO05D006743 5.4e-227 791.2 574 68.8
Prupe.7G138000 Prunus persica HOM05D005552 ORTHO05D006743 1.2e-226 790.0 575 68.2
RcHm_v2.0_Chr2g0104711 Rosa chinensis HOM05D005552 ORTHO05D006743 1.6e-226 789.6 575 67.5
Haze_15444 Corylus avellana HOM05D005552 ORTHO05D006743 1.9e-224 782.7 585 67.9
Cpa.g.sc6.396 Carica papaya HOM05D005552 ORTHO05D006743 1.9e-219 766.1 574 67.2
MD02G1166800 Malus domestica HOM05D005552 ORTHO05D006743 7.8e-218 760.8 569 65.2
ECA232G0422 Erigeron canadensis HOM05D005552 ORTHO05D006743 1.0e-217 760.4 575 65.4
MSTRG.5133 Avicennia marina HOM05D005552 ORTHO05D006743 1.3e-217 760.0 574 65.5
Glyma.11G058500 Glycine max HOM05D005552 ORTHO05D006743 1.3e-217 760.0 575 66.8
CANSAT64G0631 Cannabis sativa HOM05D005552 ORTHO05D006743 6.6e-217 757.7 574 65.9
Glyma.01G183800 Glycine max HOM05D005552 ORTHO05D006743 7.3e-216 754.2 593 64.4
THA.LOC104807572 Tarenaya hassleriana HOM05D005552 ORTHO05D006743 7.3e-216 754.2 575 64.0
arahy.Tifrunner.gnm1.ann1.21BGDZ Arachis hypogaea HOM05D005552 ORTHO05D006743 8.1e-215 750.7 603 63.0
TWI09G0520 Tripterygium wilfordii HOM05D005552 ORTHO05D006743 2.0e-213 746.1 574 64.3
Lsat_1_v5_gn_4_168700 Lactuca sativa HOM05D005552 ORTHO05D006743 6.4e-212 741.1 577 63.4
Psat2g165040 Pisum sativum HOM05D005552 ORTHO05D006743 8.4e-212 740.7 575 65.2
Hund16313 Selenicereus undatus HOM05D005552 ORTHO05D006743 4.2e-211 738.4 574 64.8
Sc16g0001610 Simmondsia chinensis HOM05D005552 ORTHO05D006743 2.1e-210 736.1 574 63.4
TPR.G11337 Trifolium pratense HOM05D005552 ORTHO05D006743 2.1e-210 736.1 574 64.5
Ca_24792_v3 Cicer arietinum L. HOM05D005552 ORTHO05D006743 2.7e-210 735.7 575 64.9
Medtr5g017970 Medicago truncatula HOM05D005552 ORTHO05D006743 1.3e-209 733.4 576 65.5
VMungo1215G1500 Vigna mungo HOM05D005552 ORTHO05D006743 2.3e-209 732.6 574 63.9
Eucgr.I00976 Eucalyptus grandis HOM05D005552 ORTHO05D006743 3.0e-209 732.3 574 63.1
Aqoxy6G00889 Aquilegia oxysepala HOM05D005552 ORTHO05D006743 6.6e-209 731.1 575 64.0
AUR62003843 Chenopodium quinoa HOM05D005552 ORTHO05D006743 6.6e-209 731.1 574 62.7
Lalb_Chr05g0213171 Lupinus albus HOM05D005552 ORTHO05D006743 8.7e-209 730.7 574 63.9
AUR62001963 Chenopodium quinoa HOM05D005552 ORTHO05D006743 4.3e-208 728.4 574 62.9
PGR119G0642 Punica granatum HOM05D005552 ORTHO05D006743 3.6e-207 725.3 574 64.1
Nitab4.5_0000368g0430 Nicotiana tabacum HOM05D005552 ORTHO05D006743 8.1e-207 724.2 603 62.2
HanXRQChr14g0430701 Helianthus annuus HOM05D005552 ORTHO05D006743 2.4e-206 722.6 579 63.6
PSO541G0461 Papaver somniferum HOM05D005552 ORTHO05D006743 9.0e-206 720.7 576 62.3
Lj6g0016933 Lotus japonicus HOM05D005552 ORTHO05D006743 4.5e-205 718.4 574 63.8
PSO675G7200 Papaver somniferum HOM05D005552 ORTHO05D006743 5.8e-205 718.0 576 62.3
ClCG01G016650 Citrullus lanatus HOM05D005552 ORTHO05D006743 7.6e-205 717.6 574 61.8
Sed0018600 Sechium edule HOM05D005552 ORTHO05D006743 7.6e-205 717.6 574 61.5
MELO3C007542.2 Cucumis melo HOM05D005552 ORTHO05D006743 2.2e-204 716.1 574 61.5
CARHR245320 Cardamine hirsuta HOM05D005552 ORTHO05D006743 6.4e-204 714.5 576 63.4
Lj2g0010083 Lotus japonicus HOM05D005552 ORTHO05D006743 4.2e-203 711.8 574 63.2
Sp7g34600 Schrenkiella parvula HOM05D005552 ORTHO05D006743 4.2e-203 711.8 577 63.3
arahy.Tifrunner.gnm1.ann1.A2BBUY Arachis hypogaea HOM05D005552 ORTHO05D006743 5.4e-203 711.4 574 63.6
AT4G37190 Arabidopsis thaliana HOM05D005552 ORTHO05D006743 7.9e-202 707.6 577 62.6
Carub.0007s0338 Capsella rubella HOM05D005552 ORTHO05D006743 1.8e-201 706.4 577 62.4
AL7G13990 Arabidopsis lyrata HOM05D005552 ORTHO05D006743 2.3e-201 706.1 577 62.2
SGA_v2.0_scaffold36G14364 Striga asiatica HOM05D005552 ORTHO05D006743 7.4e-200 701.0 644 57.0
Hma1.2p1_0873F.1_g231280 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 3.4e-197 692.2 517 66.7
Aa31LG6G13810 Aethionema arabicum HOM05D005552 ORTHO05D006743 4.9e-196 688.3 575 61.2
Thhalv10024834m.g Eutrema salsugineum HOM05D005552 ORTHO05D006743 9.3e-195 684.1 577 61.2
Peaxi162Scf00073g00015 Petunia axillaris HOM05D005552 ORTHO05D006743 1.3e-193 680.2 501 66.7
A03p64710 Brassica napus HOM05D005552 ORTHO05D006743 6.0e-186 654.8 576 58.7
BraA03t15535Z Brassica rapa HOM05D005552 ORTHO05D006743 6.0e-186 654.8 576 58.7
CDE04G2042 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 1.0e-185 654.1 554 60.8
Phvul.002G021300 Phaseolus vulgaris HOM05D005552 ORTHO05D006743 8.7e-185 651.0 516 62.8
CsaV3_6G043060 Cucumis sativus L. HOM05D005552 ORTHO05D006743 1.5e-184 650.2 531 61.2
HPP92_017765 Vanilla planifolia HOM05D005552 ORTHO05D006743 9.6e-184 647.5 575 57.6
BcaNung04273 Brassica carinata HOM05D005552 ORTHO05D006743 1.6e-183 646.7 576 58.7
C07p62120 Brassica napus HOM05D005552 ORTHO05D006743 9.0e-182 641.0 576 58.0
BolC7t46629H Brassica oleracea HOM05D005552 ORTHO05D006743 9.0e-182 641.0 576 58.0
DCAR_010923 Daucus carota HOM05D005552 ORTHO05D006743 1.2e-181 640.6 679 52.1
Os03g0240900 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 1.5e-181 640.2 576 55.4
Manes.16G089500 Manihot esculenta HOM05D005552 ORTHO05D006743 5.9e-181 638.3 496 64.9
Sopen01g043710 Solanum pennellii HOM05D005552 ORTHO05D006743 1.0e-180 637.5 474 66.5
BcaNung03946 Brassica carinata HOM05D005552 ORTHO05D006743 8.2e-175 617.8 550 59.3
ATR0767G265 Amborella trichopoda HOM05D005552 ORTHO05D006743 2.4e-174 616.3 552 57.2
Zm00001eb030410 Zea mays HOM05D005552 ORTHO05D006743 9.1e-174 614.4 576 53.8
TAR628G0695 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.1e-171 607.4 430 69.8
Hma1.2p1_0873F.1_g231290 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 5.5e-171 605.1 439 67.4
Nn6g32078 Nelumbo nucifera HOM05D005552 ORTHO05D006743 2.2e-159 566.6 431 66.1
FvH4_5g33502 Fragaria vesca HOM05D005552 ORTHO05D006743 1.6e-154 550.4 497 59.0
Gohir.A11G189700 Gossypium hirsutum HOM05D005552 ORTHO05D006743 1.4e-153 547.4 394 66.2
Oeu035482.1 Olea europaea HOM05D005552 ORTHO05D006743 1.4e-153 547.4 393 68.4
SEGI_18564 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 5.3e-150 535.4 553 49.9
TAR376G0305 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.3e-140 504.2 472 57.0
FAN18G3771 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.5e-139 500.7 368 67.9
Os12g0586400 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 3.0e-137 493.0 581 46.8
CDE06G0261 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 2.1e-130 470.3 463 53.1
Atru.chr3.424 Acer truncatum HOM05D005552 ORTHO05D006743 2.3e-129 466.8 356 64.3
Mapoly0024s0139 Marchantia polymorpha HOM05D005552 ORTHO05D006743 1.9e-123 447.2 604 39.9
FAN08G3227 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.2e-117 427.9 473 51.2
HanXRQChr04g0119851 Helianthus annuus HOM05D005552 ORTHO05D006743 3.4e-112 409.8 305 66.2
Pp3c2_14950 Physcomitrium patens HOM05D005552 ORTHO05D006743 3.9e-108 396.4 599 37.7
SMO358G0218 Selaginella moellendorffii HOM05D005552 ORTHO05D006743 1.5e-107 394.4 577 40.0
unitig_26.g9473 Utricularia gibba HOM05D005552 ORTHO05D006743 2.8e-74 283.9 244 57.0
unitig_26.g9472 Utricularia gibba HOM05D005552 ORTHO05D006743 2.2e-66 257.7 297 49.2
Atru.chr2.470 Acer truncatum HOM05D005552 ORTHO05D006743 6.5e-63 246.1 384 40.1
CBR_g38209 Chara braunii HOM05D005552 ORTHO05D006743 4.8e-58 229.9 528 31.1
HanXRQChr04g0119841 Helianthus annuus HOM05D005552 ORTHO05D006743 1.1e-57 228.8 211 57.3
Atru.chr3.423 Acer truncatum HOM05D005552 ORTHO05D006743 7.2e-54 216.1 159 67.9
arahy.Tifrunner.gnm1.ann1.ENA0P5 Arachis hypogaea HOM05D005552 ORTHO05D006743 2.2e-34 151.4 99 68.7
Psat4g201960 Pisum sativum HOM05D005552 ORTHO05D006743 2.2e-34 151.4 135 57.8
arahy.Tifrunner.gnm1.ann1.S73BBB Arachis hypogaea HOM05D005552 ORTHO05D006743 3.7e-34 150.6 413 30.8
SHI23011 Sapria himalayana HOM05D005552 ORTHO05D006743 4.8e-34 150.2 151 51.0
Cre01.g043700 Chlamydomonas reinhardtii HOM05D005552 ORTHO05D006743 1.4e-33 148.7 610 23.8
MCO05G662 Micromonas commoda HOM05D005552 ORTHO05D006743 1.1e-30 139.0 466 26.2
SHI23015 Sapria himalayana HOM05D005552 ORTHO05D006743 2.1e-29 134.8 141 48.2
Peaxi162Scf00073g00115 Petunia axillaris HOM05D005552 ORTHO05D006743 2.7e-29 134.4 74 81.1
Psat1g136760 Pisum sativum HOM05D005552 ORTHO05D006743 2.6e-27 127.9 132 49.2
C01p02170 Brassica napus HOM05D005552 ORTHO05D006743 1.7e-26 125.2 114 57.0
BolC1t00209H Brassica oleracea HOM05D005552 ORTHO05D006743 1.7e-26 125.2 114 57.0
Cfa026632 Carpinus fangiana HOM05D005552 ORTHO05D006743 2.9e-23 114.4 389 23.7
CSS0040680 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 2.5e-22 111.3 80 67.5
CSS0023439 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 4.7e-21 107.1 80 66.2
Psat5g241560 Pisum sativum HOM05D005552 ORTHO05D006743 1.7e-18 98.6 89 55.1
TAR376G0458 Trochodendron aralioides HOM05D005552 ORTHO05D006743 2.2e-18 98.2 72 68.1
Ah.11g041060 Amaranthus hybridus HOM05D005552 ORTHO05D006743 5.9e-16 90.1 52 76.9
Cpa.g.sc6.394 Carica papaya HOM05D005552 ORTHO05D006743 1.7e-15 88.6 271 26.9
SHI23016 Sapria himalayana HOM05D000105 ORTHO05D000023 1.4e-12 79.0 68 55.9
SEGI_06310 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 4.1e-09 67.4 51 60.8
FvH4_5g33501 Fragaria vesca HOM05D005552 ORTHO05D006743 7.8e-08 63.2 45 64.4
CSS0024475 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D113139 1.7e-07 62.0 58 56.9
SHI23013 Sapria himalayana HOM05D001839 ORTHO05D001867 2.5e-06 58.2 70 45.7


User provided reference genes

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