Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g34500 Coffea canephora HOM05D006169 ORTHO05D007698 2.6e-152 542.0 268 100.0
Hma1.2p1_1441F.1_g283670 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 1.2e-107 393.7 274 75.2
SalBow3G0569 Salvia bowleyana HOM05D006169 ORTHO05D007698 2.9e-106 389.0 269 72.1
Manes.08G114800 Manihot esculenta HOM05D006169 ORTHO05D007698 9.2e-105 384.0 271 72.0
Peaxi162Scf00484g00066 Petunia axillaris HOM05D006169 ORTHO05D007698 2.7e-104 382.5 261 73.6
CsaV3_2G006780 Cucumis sativus L. HOM05D006169 ORTHO05D007698 4.6e-104 381.7 266 72.6
CAN.G813.8 Capsicum annuum HOM05D006169 ORTHO05D007698 1.7e-103 379.8 252 73.8
FvH4_6g06920 Fragaria vesca HOM05D006169 ORTHO05D007698 3.9e-103 378.6 271 70.1
Nitab4.5_0001266g0050 Nicotiana tabacum HOM05D006169 ORTHO05D007698 3.9e-103 378.6 273 71.4
Potri.013G012400 Populus trichocarpa HOM05D006169 ORTHO05D007698 6.6e-103 377.9 274 70.4
SGA_v2.0_scaffold81G26108 Striga asiatica HOM05D006169 ORTHO05D007698 6.6e-103 377.9 273 71.4
Thecc.05G316900 Theobroma cacao HOM05D006169 ORTHO05D007698 6.6e-103 377.9 269 72.9
GSVIVG01031157001 Vitis vinifera HOM05D006169 ORTHO05D007698 8.6e-103 377.5 237 78.9
Glyma.10G150300 Glycine max HOM05D006169 ORTHO05D007698 5.6e-102 374.8 263 73.0
Lj5g0023338 Lotus japonicus HOM05D006169 ORTHO05D007698 5.6e-102 374.8 268 72.0
CANSAT54G3053 Cannabis sativa HOM05D006169 ORTHO05D007698 7.3e-102 374.4 279 69.2
RcHm_v2.0_Chr3g0456451 Rosa chinensis HOM05D006169 ORTHO05D007698 1.2e-101 373.6 271 69.7
Eucgr.L02153 Eucalyptus grandis HOM05D006169 ORTHO05D007698 1.6e-101 373.2 214 82.7
MD04G1197600 Malus domestica HOM05D006169 ORTHO05D007698 1.6e-101 373.2 279 69.5
Duzib177G0247 Durio zibethinus HOM05D006169 ORTHO05D007698 3.6e-101 372.1 267 72.3
QL03p019145 Quercus lobata HOM05D006169 ORTHO05D007698 4.7e-101 371.7 275 69.8
COL.COLO4_10563 Corchorus olitorius HOM05D006169 ORTHO05D007698 8.1e-101 370.9 275 71.3
Eucgr.H03261 Eucalyptus grandis HOM05D006169 ORTHO05D007698 8.1e-101 370.9 214 82.2
Ciclev10001820m.g Citrus clementina HOM05D006169 ORTHO05D007698 1.1e-100 370.5 272 70.6
Rhsim05G0136600 Rhododendron simsii HOM05D006169 ORTHO05D007698 1.1e-100 370.5 240 77.1
MELO3C004212.2 Cucumis melo HOM05D006169 ORTHO05D007698 1.4e-100 370.2 266 71.1
Lj9C200T3 Lonicera japonica HOM05D006169 ORTHO05D007698 2.4e-100 369.4 288 65.6
Phvul.007G198500 Phaseolus vulgaris HOM05D006169 ORTHO05D007698 3.1e-100 369.0 265 72.1
THA.LOC104802790 Tarenaya hassleriana HOM05D006169 ORTHO05D007698 3.1e-100 369.0 269 70.3
Gohir.A11G270300 Gossypium hirsutum HOM05D006169 ORTHO05D007698 1.5e-99 366.7 269 71.4
Gorai.007G302700 Gossypium raimondii HOM05D006169 ORTHO05D007698 2.0e-99 366.3 269 71.4
TWI56G0200 Tripterygium wilfordii HOM05D006169 ORTHO05D007698 2.6e-99 365.9 273 67.4
Actinidia02688 Actinidia chinensis HOM05D006169 ORTHO05D007698 5.8e-99 364.8 262 72.5
Ca_10150_v3 Cicer arietinum L. HOM05D006169 ORTHO05D007698 9.9e-99 364.0 271 71.2
Gohir.D11G280500 Gossypium hirsutum HOM05D006169 ORTHO05D007698 1.3e-98 363.6 271 70.1
Medtr1g083600 Medicago truncatula HOM05D006169 ORTHO05D007698 3.8e-98 362.1 269 69.1
arahy.Tifrunner.gnm1.ann1.NVQ69B Arachis hypogaea HOM05D006169 ORTHO05D007698 6.4e-98 361.3 225 80.0
Migut.N02103 Erythranthe guttata HOM05D006169 ORTHO05D007698 6.4e-98 361.3 269 69.9
Aqoxy5G00801 Aquilegia oxysepala HOM05D006169 ORTHO05D007698 8.4e-98 360.9 247 74.1
Eucgr.H04522 Eucalyptus grandis HOM05D006169 ORTHO05D007698 8.4e-98 360.9 215 80.9
DCAR_029375 Daucus carota HOM05D006169 ORTHO05D007698 2.4e-97 359.4 266 69.2
Sabra13G0011000 Salix brachista HOM05D006169 ORTHO05D007698 7.1e-97 357.8 307 62.9
Sed0028110 Sechium edule HOM05D006169 ORTHO05D007698 9.2e-97 357.5 273 66.3
AUR62000726 Chenopodium quinoa HOM05D006169 ORTHO05D007698 1.2e-96 357.1 258 70.2
PGR031G2380 Punica granatum HOM05D006169 ORTHO05D007698 3.5e-96 355.5 212 81.6
Lsat_1_v5_gn_7_73300 Lactuca sativa HOM05D006169 ORTHO05D007698 7.8e-96 354.4 268 67.2
Sc14g0006600 Simmondsia chinensis HOM05D006169 ORTHO05D007698 1.3e-95 353.6 267 68.5
HanXRQChr06g0182151 Helianthus annuus HOM05D006169 ORTHO05D007698 3.9e-95 352.1 202 81.2
Lalb_Chr06g0167751 Lupinus albus HOM05D006169 ORTHO05D007698 1.5e-94 350.1 249 71.9
Haze_04109 Corylus avellana HOM05D006169 ORTHO05D007698 1.9e-94 349.7 288 65.3
ECA236G4200 Erigeron canadensis HOM05D006169 ORTHO05D007698 3.3e-94 349.0 267 67.0
Sopen10g013390 Solanum pennellii HOM05D006169 ORTHO05D007698 5.6e-94 348.2 225 76.9
Solyc10g044710.2 Solanum lycopersicum HOM05D006169 ORTHO05D007698 1.2e-93 347.1 225 76.4
Atru.chr5.1841 Acer truncatum HOM05D006169 ORTHO05D007698 2.1e-93 346.3 272 68.0
PSO210G0761 Papaver somniferum HOM05D006169 ORTHO05D007698 1.1e-92 344.0 249 67.9
Ah.04g161300 Amaranthus hybridus HOM05D006169 ORTHO05D007698 2.6e-91 339.3 227 73.6
AT3G05625 Arabidopsis thaliana HOM05D006169 ORTHO05D007698 2.6e-91 339.3 211 75.8
Thhalv10021364m.g Eutrema salsugineum HOM05D006169 ORTHO05D007698 3.4e-91 339.0 211 75.8
Carub.0003s0495 Capsella rubella HOM05D006169 ORTHO05D007698 9.9e-91 337.4 212 76.9
CARHR080070 Cardamine hirsuta HOM05D006169 ORTHO05D007698 1.3e-90 337.0 211 76.3
Sp3g04510 Schrenkiella parvula HOM05D006169 ORTHO05D007698 3.8e-90 335.5 211 76.3
PSO832G1922 Papaver somniferum HOM05D006169 ORTHO05D007698 6.4e-90 334.7 245 67.3
BcaB04g19252 Brassica carinata HOM05D006169 ORTHO05D007698 2.4e-89 332.8 211 75.4
A03p34240 Brassica napus HOM05D006169 ORTHO05D007698 4.2e-89 332.0 271 64.6
BolC3t16445H Brassica oleracea HOM05D006169 ORTHO05D007698 4.2e-89 332.0 211 75.4
BraA03t12598Z Brassica rapa HOM05D006169 ORTHO05D007698 4.2e-89 332.0 271 64.6
AL3G16270 Arabidopsis lyrata HOM05D006169 ORTHO05D007698 5.4e-89 331.6 211 74.9
BcaB04g19251 Brassica carinata HOM05D006169 ORTHO05D007698 9.3e-89 330.9 211 74.9
unitig_0.g2320 Utricularia gibba HOM05D006169 ORTHO05D007698 9.3e-89 330.9 240 71.7
Aa31LG5G16050 Aethionema arabicum HOM05D006169 ORTHO05D007698 4.6e-88 328.6 220 72.7
Cfa006660 Carpinus fangiana HOM05D006169 ORTHO05D007698 7.8e-88 327.8 254 69.3
ClCG02G015230 Citrullus lanatus HOM05D006169 ORTHO05D007698 7.8e-88 327.8 271 65.3
CDE05G1145 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 1.0e-87 327.4 262 61.5
TPR.G17714 Trifolium pratense HOM05D006169 ORTHO05D007698 3.0e-87 325.9 176 86.4
HPP92_016954 Vanilla planifolia HOM05D006169 ORTHO05D007698 6.6e-87 324.7 213 74.2
ATR0693G261 Amborella trichopoda HOM05D006169 ORTHO05D007698 1.1e-86 323.9 216 73.6
HPP92_016950 Vanilla planifolia HOM05D006169 ORTHO05D007698 1.1e-86 323.9 215 73.5
Hma1.2p1_1441F.1_g283680 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 9.6e-86 320.9 231 74.0
C03p41640 Brassica napus HOM05D006169 ORTHO05D007698 2.6e-83 312.8 262 63.4
FAN09G1827 Fragaria x ananassa HOM05D006169 ORTHO05D007698 4.5e-83 312.0 274 62.0
Cpa.g.sc48.120 Carica papaya HOM05D006169 ORTHO05D007698 9.9e-83 310.8 314 57.0
Nn3g21567 Nelumbo nucifera HOM05D006169 ORTHO05D007698 1.7e-82 310.1 241 66.4
CiPaw.08G158800 Carya illinoinensis HOM05D006169 ORTHO05D007698 2.2e-82 309.7 273 61.9
FAN14G4015 Fragaria x ananassa HOM05D006169 ORTHO05D007698 4.9e-82 308.5 177 81.4
Prupe.6G318000 Prunus persica HOM05D006169 ORTHO05D007698 1.4e-81 307.0 272 61.0
SEGI_23594 Sequoiadendron giganteum HOM05D006169 ORTHO05D007698 9.3e-81 304.3 214 69.2
EL10Ac4g09881 Beta vulgaris HOM05D006169 ORTHO05D007698 2.7e-80 302.8 201 73.6
AUR62005238 Chenopodium quinoa HOM05D006169 ORTHO05D007698 3.5e-80 302.4 167 81.4
BcaB04g19253 Brassica carinata HOM05D006169 ORTHO05D007698 4.6e-80 302.0 211 69.7
Hund07115 Selenicereus undatus HOM05D006169 ORTHO05D007698 1.6e-77 293.5 211 70.6
ClCG00G004550 Citrullus lanatus HOM05D006169 ORTHO05D007698 3.7e-77 292.4 352 50.3
MBI18_g25080_MAGBIO Magnolia biondii HOM05D006169 ORTHO05D007698 3.7e-77 292.4 246 64.2
Dinv24403 Davidia involucrata HOM05D006169 ORTHO05D007698 4.8e-77 292.0 205 73.7
Oeu048884.1 Olea europaea HOM05D006169 ORTHO05D007698 5.5e-73 278.5 195 72.8
CDE11G0042 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 6.0e-72 275.0 222 60.4
Pp3c1_33190 Physcomitrium patens HOM05D006169 ORTHO05D007698 1.3e-69 267.3 192 66.1
Zm00001eb340780 Zea mays HOM05D006169 ORTHO05D007698 6.9e-68 261.5 191 66.5
Psat6g151520 Pisum sativum HOM05D006169 ORTHO05D007698 2.0e-67 260.0 200 69.0
arahy.Tifrunner.gnm1.ann1.X8FEVW Arachis hypogaea HOM05D006169 ORTHO05D007698 4.9e-66 255.4 198 69.7
Actinidia19770 Actinidia chinensis HOM05D006169 ORTHO05D007698 2.5e-65 253.1 169 75.7
Mapoly0065s0090 Marchantia polymorpha HOM05D006169 ORTHO05D007698 4.6e-64 248.8 187 62.0
FAN05G4461 Fragaria x ananassa HOM05D006169 ORTHO05D007698 1.0e-58 231.1 179 66.5
VMungo0720G2022 Vigna mungo HOM05D006169 ORTHO05D007698 7.9e-56 221.5 260 54.2
CBR_g8203 Chara braunii HOM05D006169 ORTHO05D007698 2.3e-55 219.9 202 54.0
Nitab4.5_0000005g0540 Nicotiana tabacum HOM05D006169 ORTHO05D007698 2.3e-55 219.9 141 76.6
Cre12.g508350 Chlamydomonas reinhardtii HOM05D006169 ORTHO05D007698 2.0e-54 216.9 179 57.0
Glyma.20G237950 Glycine max HOM05D006169 ORTHO05D007698 1.1e-52 211.1 117 85.5
AagrBONN_evm.TU.Sc2ySwM_344.2014 Anthoceros agrestis HOM05D006169 ORTHO05D007698 1.5e-51 207.2 152 65.1
SMO358G0244 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 3.6e-48 196.1 179 50.8
TAR365G0132 Trochodendron aralioides HOM05D002548 ORTHO05D003031 2.6e-46 189.9 258 44.2
MCO01G635 Micromonas commoda HOM05D006169 ORTHO05D007698 2.3e-39 166.8 183 48.1
arahy.Tifrunner.gnm1.ann1.91HID7 Arachis hypogaea HOM05D006169 ORTHO05D007698 8.8e-39 164.9 81 95.1
arahy.Tifrunner.gnm1.ann1.Z5NCG3 Arachis hypogaea HOM05D006169 ORTHO05D007698 1.3e-37 161.0 81 93.8
arahy.Tifrunner.gnm1.ann1.W0CMT4 Arachis hypogaea HOM05D006169 ORTHO05D007698 2.6e-35 153.3 76 94.7
PGSC0003DMG400043741 Solanum tuberosum HOM05D006169 ORTHO05D007698 1.1e-33 147.9 174 47.1
RcHm_v2.0_Chr1g0332671 Rosa chinensis HOM05D006169 ORTHO05D007698 8.3e-29 131.7 69 85.5
PRCOL_00000586 Prasinoderma coloniale HOM05D006169 ORTHO05D007698 5.9e-27 125.6 178 39.9
Sabra13G0011100 Salix brachista HOM05D006169 ORTHO05D007698 9.4e-25 118.2 170 46.5
arahy.Tifrunner.gnm1.ann1.CWA5R2 Arachis hypogaea HOM05D006169 ORTHO05D007698 1.2e-24 117.9 58 93.1
SMO117G0309 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 6.1e-24 115.5 116 40.5
MSTRG.5122 Avicennia marina HOM05D006169 ORTHO05D007698 2.0e-22 110.5 113 54.9
CSS0014495 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 4.5e-19 99.4 117 53.0
CSS0040457 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 5.5e-17 92.4 51 86.3
arahy.Tifrunner.gnm1.ann1.C5NY6B Arachis hypogaea HOM05D006169 ORTHO05D007698 2.1e-16 90.5 64 68.8
arahy.Tifrunner.gnm1.ann1.4I5A07 Arachis hypogaea HOM05D000158 ORTHO05D003614 2.8e-16 90.1 45 88.9
arahy.Tifrunner.gnm1.ann1.GNZ56J Arachis hypogaea HOM05D006169 ORTHO05D007698 4.4e-14 82.8 44 81.8
Os01g0343500 Oryza sativa ssp. japonica HOM05D006169 ORTHO05D007698 1.0e-10 71.6 73 53.4


User provided reference genes

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