Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g33910 Coffea canephora HOM05D006319 ORTHO05D007963 3.1e-134 481.9 256 100.0
Nitab4.5_0004105g0090 Nicotiana tabacum HOM05D006319 ORTHO05D007963 1.1e-70 270.8 192 74.5
CSS0021790 Camellia sinensis var. sinensis HOM05D006319 ORTHO05D007963 1.9e-70 270.0 238 64.7
MELO3C023216.2 Cucumis melo HOM05D006319 ORTHO05D007963 2.1e-69 266.5 205 70.2
ClCG02G000280 Citrullus lanatus HOM05D005757 ORTHO05D007090 7.8e-69 264.6 214 67.3
CsaV3_2G019570 Cucumis sativus L. HOM05D006319 ORTHO05D007963 1.3e-68 263.8 190 72.1
MSTRG.23490 Avicennia marina HOM05D006319 ORTHO05D007963 6.6e-68 261.5 251 62.9
PGSC0003DMG400032538 Solanum tuberosum HOM05D006319 ORTHO05D007963 6.6e-68 261.5 204 68.6
Sopen04g004550 Solanum pennellii HOM05D006319 ORTHO05D007963 1.5e-67 260.4 207 68.1
Nitab4.5_0013462g0010 Nicotiana tabacum HOM05D006319 ORTHO05D007963 1.9e-67 260.0 239 62.8
Duzib187G0662 Durio zibethinus HOM05D006319 ORTHO05D007963 4.3e-67 258.8 252 60.7
COL.COLO4_35821 Corchorus olitorius HOM05D006319 ORTHO05D007963 7.3e-67 258.1 190 70.5
Solyc04g009420.3 Solanum lycopersicum HOM05D006319 ORTHO05D007963 7.3e-67 258.1 192 71.9
Oeu011026.1 Olea europaea HOM05D006319 ORTHO05D007963 2.1e-66 256.5 247 59.1
Dinv05221 Davidia involucrata HOM05D006319 ORTHO05D007963 6.2e-66 255.0 261 59.0
Lj7A582T32 Lonicera japonica HOM05D006319 ORTHO05D007963 6.2e-66 255.0 165 78.2
CANSAT01G1475 Cannabis sativa HOM05D006319 ORTHO05D007963 1.8e-65 253.4 192 72.4
QL10p041175 Quercus lobata HOM05D006319 ORTHO05D007963 1.8e-65 253.4 263 56.7
Thecc.01G138200 Theobroma cacao HOM05D006319 ORTHO05D007963 3.1e-65 252.7 229 61.1
Eucgr.H05122 Eucalyptus grandis HOM05D006319 ORTHO05D007963 1.2e-64 250.8 186 69.4
SGA_v2.0_scaffold273G46467 Striga asiatica HOM05D006319 ORTHO05D007963 2.6e-64 249.6 252 58.7
Potri.007G100800 Populus trichocarpa HOM05D006319 ORTHO05D007963 3.4e-64 249.2 235 60.9
Glyma.04G209900 Glycine max HOM05D006319 ORTHO05D007963 4.4e-64 248.8 214 61.2
Hma1.2p1_0236F.1_g099250 Hydrangea macrophylla HOM05D006319 ORTHO05D007963 4.4e-64 248.8 247 59.5
QL10p041464 Quercus lobata HOM05D006319 ORTHO05D007963 4.4e-64 248.8 161 78.3
CAN.G186.2 Capsicum annuum HOM05D006319 ORTHO05D007963 7.5e-64 248.1 222 62.2
Glyma.06G156100 Glycine max HOM05D006319 ORTHO05D007963 7.5e-64 248.1 160 77.5
vmacro18688 Vaccinium macrocarpon HOM05D006319 ORTHO05D007963 9.9e-64 247.7 216 62.0
Prupe.4G276300 Prunus persica HOM05D006319 ORTHO05D007963 1.3e-63 247.3 240 60.0
Migut.H00824 Erythranthe guttata HOM05D006319 ORTHO05D007963 2.9e-63 246.1 264 57.6
Psat5g060360 Pisum sativum HOM05D006319 ORTHO05D007963 2.9e-63 246.1 248 58.5
Atru.chr4.1000 Acer truncatum HOM05D006319 ORTHO05D007963 3.7e-63 245.7 188 66.0
Actinidia16521 Actinidia chinensis HOM05D006319 ORTHO05D007963 3.7e-63 245.7 230 62.2
Ciclev10002322m.g Citrus clementina HOM05D006319 ORTHO05D007963 3.7e-63 245.7 238 59.7
Gorai.011G118400 Gossypium raimondii HOM05D006319 ORTHO05D007963 4.9e-63 245.4 239 60.3
Lj1g0009956 Lotus japonicus HOM05D006319 ORTHO05D007963 6.4e-63 245.0 210 64.3
Hund07232 Selenicereus undatus HOM05D006319 ORTHO05D007963 8.3e-63 244.6 196 67.3
AUR62000524 Chenopodium quinoa HOM05D006319 ORTHO05D007963 1.1e-62 244.2 204 67.2
VMungo0464G0362 Vigna mungo HOM05D006319 ORTHO05D007963 1.4e-62 243.8 160 75.6
AUR62006869 Chenopodium quinoa HOM05D006319 ORTHO05D007963 3.2e-62 242.7 202 66.8
Phvul.009G154200 Phaseolus vulgaris HOM05D006319 ORTHO05D007963 4.1e-62 242.3 247 57.5
CiPaw.04G079200 Carya illinoinensis HOM05D006319 ORTHO05D007963 7.1e-62 241.5 226 61.5
Nn1g08971 Nelumbo nucifera HOM05D006319 ORTHO05D007963 7.1e-62 241.5 172 72.7
Cpa.g.sc37.12 Carica papaya HOM05D006319 ORTHO05D007963 1.2e-61 240.7 270 55.2
RcHm_v2.0_Chr2g0122611 Rosa chinensis HOM05D006319 ORTHO05D007963 1.6e-61 240.4 210 63.3
SalBow1G4836 Salvia bowleyana HOM05D006319 ORTHO05D007963 1.6e-61 240.4 194 67.5
Medtr3g096750 Medicago truncatula HOM05D006319 ORTHO05D007963 2.1e-61 240.0 246 56.9
GSVIVG01022331001 Vitis vinifera HOM05D006319 ORTHO05D007963 2.1e-61 240.0 191 67.0
Aqoxy6G00315 Aquilegia oxysepala HOM05D006319 ORTHO05D007963 2.7e-61 239.6 162 75.3
FvH4_1g24980 Fragaria vesca HOM05D006319 ORTHO05D007963 3.5e-61 239.2 156 76.9
PGR102G0633 Punica granatum HOM05D006319 ORTHO05D007963 3.5e-61 239.2 247 58.3
TWI31G0926 Tripterygium wilfordii HOM05D006319 ORTHO05D007963 4.6e-61 238.8 241 59.3
MD01G1000300 Malus domestica HOM05D006319 ORTHO05D007963 1.0e-60 237.7 194 65.5
DCAR_009594 Daucus carota HOM05D006319 ORTHO05D007963 2.3e-60 236.5 198 64.6
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 3.9e-60 235.7 252 56.7
Lalb_Chr08g0238171 Lupinus albus HOM05D006319 ORTHO05D007963 3.9e-60 235.7 239 57.7
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 5.1e-60 235.3 207 63.3
Manes.12G159300 Manihot esculenta HOM05D006319 ORTHO05D007963 5.1e-60 235.3 236 57.2
THA.LOC104826346 Tarenaya hassleriana HOM05D006319 ORTHO05D007963 3.3e-59 232.6 197 66.0
BcaB06g28232 Brassica carinata HOM05D006319 ORTHO05D007963 5.6e-59 231.9 229 56.8
arahy.Tifrunner.gnm1.ann1.7TU5G5 Arachis hypogaea HOM05D006319 ORTHO05D007963 7.3e-59 231.5 195 63.1
EL10Ac4g09632 Beta vulgaris HOM05D006319 ORTHO05D007963 2.1e-58 229.9 250 56.4
arahy.Tifrunner.gnm1.ann1.P5PFFU Arachis hypogaea HOM05D006319 ORTHO05D007963 4.7e-58 228.8 195 62.6
A04p21670 Brassica napus HOM05D006319 ORTHO05D007963 4.7e-58 228.8 233 57.5
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 8.1e-58 228.0 229 58.1
FAN23G2801 Fragaria x ananassa HOM05D006319 ORTHO05D007963 1.1e-57 227.6 237 56.5
TAR628G0979 Trochodendron aralioides HOM05D006319 ORTHO05D007963 1.8e-57 226.9 287 50.5
Zm00001eb422700 Zea mays HOM05D006319 ORTHO05D007963 1.8e-57 226.9 160 68.8
arahy.Tifrunner.gnm1.ann1.4SM61H Arachis hypogaea HOM05D006319 ORTHO05D007963 4.0e-57 225.7 219 58.9
MBI06_g35206_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 4.0e-57 225.7 222 58.6
BcaB01g03112 Brassica carinata HOM05D006319 ORTHO05D007963 5.2e-57 225.3 232 57.8
Carub.0004s0957 Capsella rubella HOM05D006319 ORTHO05D007963 5.2e-57 225.3 229 55.9
BraA04t17731Z Brassica rapa HOM05D006319 ORTHO05D007963 6.8e-57 224.9 234 56.4
CARHR121630 Cardamine hirsuta HOM05D006319 ORTHO05D007963 6.8e-57 224.9 231 57.6
arahy.Tifrunner.gnm1.ann1.B4AV5R Arachis hypogaea HOM05D006319 ORTHO05D007963 8.9e-57 224.6 225 57.8
BcaC01g04984 Brassica carinata HOM05D006319 ORTHO05D007963 8.9e-57 224.6 207 60.9
BcaC02g08157 Brassica carinata HOM05D006319 ORTHO05D007963 1.2e-56 224.2 227 57.7
C04p57790 Brassica napus HOM05D006319 ORTHO05D007963 1.2e-56 224.2 227 57.7
FAN28G2219 Fragaria x ananassa HOM05D006319 ORTHO05D007963 2.0e-56 223.4 173 67.6
PSO782G1065 Papaver somniferum HOM05D006319 ORTHO05D007963 2.6e-56 223.0 195 62.6
AL4G23100 Arabidopsis lyrata HOM05D006319 ORTHO05D007963 4.4e-56 222.2 235 57.0
BraA03t11843Z Brassica rapa HOM05D006319 ORTHO05D007963 4.4e-56 222.2 234 56.8
A03p26290 Brassica napus HOM05D006319 ORTHO05D007963 5.8e-56 221.9 234 56.8
Ah.06g191080 Amaranthus hybridus HOM05D006319 ORTHO05D007963 7.6e-56 221.5 167 68.3
unitig_899.g15151 Utricularia gibba HOM05D006319 ORTHO05D007963 7.6e-56 221.5 246 55.7
CDE08G0565 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 9.9e-56 221.1 199 58.8
BolC4t27297H Brassica oleracea HOM05D006319 ORTHO05D007963 1.3e-55 220.7 232 56.5
FAN19G2853 Fragaria x ananassa HOM05D006319 ORTHO05D007963 1.3e-55 220.7 254 53.5
BolC3t15489H Brassica oleracea HOM05D006319 ORTHO05D007963 2.2e-55 219.9 160 70.0
C03p31420 Brassica napus HOM05D006319 ORTHO05D007963 2.9e-55 219.5 226 58.4
AT2G28605 Arabidopsis thaliana HOM05D006319 ORTHO05D007963 1.1e-54 217.6 233 57.1
HPP92_009279 Vanilla planifolia HOM05D006319 ORTHO05D007963 1.9e-54 216.9 169 69.2
Sc02g0003550 Simmondsia chinensis HOM05D006319 ORTHO05D007963 5.4e-54 215.3 240 56.2
ECA246G1987 Erigeron canadensis HOM05D000001 ORTHO05D000003 7.1e-54 214.9 158 67.1
HanXRQChr12g0378071 Helianthus annuus HOM05D006319 ORTHO05D007963 7.8e-53 211.5 228 56.6
Peaxi162Scf00842g00214 Petunia axillaris HOM05D006319 ORTHO05D007963 8.7e-52 208.0 140 74.3
Eucgr.H02106 Eucalyptus grandis HOM05D006319 ORTHO05D007963 1.9e-51 206.8 154 70.1
ATR0584G200 Amborella trichopoda HOM05D006319 ORTHO05D007963 7.3e-51 204.9 154 68.8
arahy.Tifrunner.gnm1.ann1.GQG991 Arachis hypogaea HOM05D006319 ORTHO05D007963 2.4e-46 189.9 167 60.5
arahy.Tifrunner.gnm1.ann1.E0QW5U Arachis hypogaea HOM05D006319 ORTHO05D007963 1.7e-44 183.7 232 51.3
SEGI_06099 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 3.3e-43 179.5 157 58.0
SEGI_37383 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 4.3e-43 179.1 157 57.3
Potri.005G068500 Populus trichocarpa HOM05D006319 ORTHO05D007963 5.3e-41 172.2 241 48.1
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 6.9e-41 171.8 185 51.9
AagrBONN_evm.TU.Sc2ySwM_228.2950 Anthoceros agrestis HOM05D006319 ORTHO05D007963 4.5e-40 169.1 190 46.8
Lsat_1_v5_gn_5_34560 Lactuca sativa HOM05D006319 ORTHO05D007963 2.9e-39 166.4 156 57.7
Pp3c8_18060 Physcomitrium patens HOM05D006319 ORTHO05D007963 2.4e-38 163.3 188 50.5
CBR_g49982 Chara braunii HOM05D006319 ORTHO05D007963 1.1e-33 147.9 170 47.1
SMO117G0258 Selaginella moellendorffii HOM05D006319 ORTHO05D007963 2.0e-32 143.7 161 47.2
Ca_16986_v3 Cicer arietinum L. HOM05D001650 ORTHO05D001592 2.9e-31 139.8 92 72.8
Gohir.D10G108000 Gossypium hirsutum HOM05D006319 ORTHO05D007963 8.4e-31 138.3 239 42.3
Mapoly0092s0018 Marchantia polymorpha HOM05D006319 ORTHO05D007963 1.1e-30 137.9 188 42.0
Gohir.A10G068160 Gossypium hirsutum HOM05D006319 ORTHO05D007963 5.5e-30 135.6 187 45.5
TPR.G10777 Trifolium pratense HOM05D006319 ORTHO05D007963 1.9e-27 127.1 81 79.0
FAN26G1803 Fragaria x ananassa HOM05D001650 ORTHO05D001592 6.2e-26 122.1 104 59.6
FAN23G0464 Fragaria x ananassa HOM05D006319 ORTHO05D007963 5.3e-25 119.0 81 72.8
TPR.G33590 Trifolium pratense HOM05D001650 ORTHO05D001592 6.5e-23 112.1 141 48.2
Cre16.g678851 Chlamydomonas reinhardtii HOM05D006319 ORTHO05D007963 1.1e-22 111.3 214 34.1
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 1.9e-22 110.5 133 48.9
Manes.12G147800 Manihot esculenta HOM05D006319 ORTHO05D007963 2.1e-21 107.1 144 47.9
arahy.Tifrunner.gnm1.ann1.949H7S Arachis hypogaea HOM05D006319 ORTHO05D007963 3.5e-21 106.3 112 51.8
Os04g0434900 Oryza sativa ssp. japonica HOM05D006319 ORTHO05D007963 4.6e-21 105.9 69 71.0
arahy.Tifrunner.gnm1.ann1.PNID9I Arachis hypogaea HOM05D006319 ORTHO05D007963 6.0e-21 105.5 142 46.5
arahy.Tifrunner.gnm1.ann1.Q7YENP Arachis hypogaea HOM05D006319 ORTHO05D007963 1.3e-20 104.4 142 45.8
arahy.Tifrunner.gnm1.ann1.RE08FE Arachis hypogaea HOM05D006319 ORTHO05D007963 4.1e-17 92.8 90 55.6
MCO01G211 Micromonas commoda HOM05D006319 ORTHO05D007963 1.4e-12 77.8 184 31.0
CDE08G0611 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 2.0e-11 73.9 84 53.6
arahy.Tifrunner.gnm1.ann1.I50TU7 Arachis hypogaea HOM05D006319 ORTHO05D007963 5.7e-11 72.4 116 41.4
MBI11_g02539_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 3.4e-08 63.2 107 42.1
MBI17_g01556_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 1.7e-07 60.8 122 41.0
PRCOL_00004434 Prasinoderma coloniale HOM05D006319 ORTHO05D007963 1.7e-07 60.8 93 39.8
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 5.0e-07 59.3 203 25.6
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 6.5e-07 58.9 203 25.6
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 3.2e-06 56.6 212 25.9
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 3.2e-06 56.6 211 24.6
CsaV3_5G026220 Cucumis sativus L. HOM05D002933 ORTHO05D007742 7.2e-06 55.5 192 28.6
Potri.010G210200 Populus trichocarpa HOM05D002933 ORTHO05D007742 7.2e-06 55.5 192 26.6


User provided reference genes

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