Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g33820 Coffea canephora HOM05D000361 ORTHO05D004243 3.7e-126 454.9 232 100.0
Cc04_g08620 Coffea canephora HOM05D000361 ORTHO05D004243 2.4e-101 372.5 232 85.8
Cc02_g26000 Coffea canephora HOM05D000361 ORTHO05D004243 1.2e-100 370.2 232 85.3
Cc01_g21390 Coffea canephora HOM05D000361 ORTHO05D004243 2.8e-97 359.0 257 76.3
Cc05_g04720 Coffea canephora HOM05D000361 ORTHO05D004243 2.4e-93 345.9 194 92.8
Cc11_g04100 Coffea canephora HOM05D000361 ORTHO05D004243 4.3e-90 335.1 194 90.7
Nitab4.5_0000363g0270 Nicotiana tabacum HOM05D000361 ORTHO05D004243 4.9e-78 295.0 227 70.9
Nitab4.5_0006144g0010 Nicotiana tabacum HOM05D000361 ORTHO05D004243 1.4e-77 293.5 227 68.3
Peaxi162Scf00058g02630 Petunia axillaris HOM05D000361 ORTHO05D004243 1.9e-77 293.1 227 69.2
Dinv33114 Davidia involucrata HOM05D000361 ORTHO05D004243 2.0e-76 289.7 227 70.9
GSVIVG01028119001 Vitis vinifera HOM05D000361 ORTHO05D004243 1.0e-75 287.3 227 70.0
Hma1.2p1_0486F.1_g163260 Hydrangea macrophylla HOM05D000361 ORTHO05D004243 1.7e-75 286.6 227 67.4
Thecc.01G313200 Theobroma cacao HOM05D000361 ORTHO05D004243 1.7e-75 286.6 227 66.1
Actinidia20995 Actinidia chinensis HOM05D000361 ORTHO05D004243 6.6e-75 284.6 227 68.3
Rhsim01G0290600 Rhododendron simsii HOM05D000361 ORTHO05D004243 6.6e-75 284.6 227 67.8
Actinidia25847 Actinidia chinensis HOM05D000361 ORTHO05D004243 1.1e-74 283.9 225 68.9
CAN.G1280.26 Capsicum annuum HOM05D000361 ORTHO05D004243 1.5e-74 283.5 227 67.0
Sopen06g004290 Solanum pennellii HOM05D000361 ORTHO05D004243 1.2e-73 280.4 227 66.5
Solyc06g009650.3 Solanum lycopersicum HOM05D000361 ORTHO05D004243 1.6e-73 280.0 227 66.1
Duzib138G1700 Durio zibethinus HOM05D000361 ORTHO05D004243 2.1e-73 279.6 227 67.8
Cpa.g.sc18.42 Carica papaya HOM05D000361 ORTHO05D004243 3.6e-73 278.9 227 67.0
Gohir.D12G128800 Gossypium hirsutum HOM05D000361 ORTHO05D004243 1.1e-72 277.3 227 65.6
Gorai.008G139800 Gossypium raimondii HOM05D000361 ORTHO05D004243 1.1e-72 277.3 227 65.6
Prupe.5G007800 Prunus persica HOM05D000361 ORTHO05D004243 1.1e-72 277.3 227 65.2
Gohir.A12G125100 Gossypium hirsutum HOM05D000361 ORTHO05D004243 2.3e-72 276.2 227 65.2
PGR119G2139 Punica granatum HOM05D000361 ORTHO05D004243 2.3e-72 276.2 225 64.9
Nn4g25601 Nelumbo nucifera HOM05D000361 ORTHO05D004243 4.0e-72 275.4 227 64.3
MD03G1295300 Malus domestica HOM05D000361 ORTHO05D004243 6.8e-72 274.6 227 64.3
Duzib133G0716 Durio zibethinus HOM05D000361 ORTHO05D004243 1.2e-71 273.9 227 64.8
MELO3C023707.2 Cucumis melo HOM05D000361 ORTHO05D004243 1.5e-71 273.5 227 65.6
Atru.chr5.1003 Acer truncatum HOM05D000361 ORTHO05D004243 2.0e-71 273.1 227 64.3
CSS0010179 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 2.0e-71 273.1 227 66.1
CSS0030911 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 2.0e-71 273.1 227 66.1
CsaV3_7G025080 Cucumis sativus L. HOM05D000361 ORTHO05D004243 2.0e-71 273.1 227 65.2
CSS0012467 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 2.6e-71 272.7 228 66.2
Ciclev10018936m.g Citrus clementina HOM05D000361 ORTHO05D004243 3.4e-71 272.3 226 63.3
vmacro15111 Vaccinium macrocarpon HOM05D000361 ORTHO05D004243 4.4e-71 271.9 236 64.0
Sopen01g031260 Solanum pennellii HOM05D000361 ORTHO05D004243 7.5e-71 271.2 227 66.1
Eucgr.H00929 Eucalyptus grandis HOM05D000361 ORTHO05D004243 9.9e-71 270.8 227 62.6
MSTRG.21685 Avicennia marina HOM05D000361 ORTHO05D004243 2.9e-70 269.2 227 63.9
Solyc01g079490.2 Solanum lycopersicum HOM05D000361 ORTHO05D004243 2.9e-70 269.2 223 65.9
Sed0012026 Sechium edule HOM05D000361 ORTHO05D004243 8.3e-70 267.7 227 63.9
ATR0796G177 Amborella trichopoda HOM05D000361 ORTHO05D004243 1.9e-69 266.5 226 62.4
QL12p019966 Quercus lobata HOM05D000361 ORTHO05D004243 3.2e-69 265.8 227 63.0
TWI36G0074 Tripterygium wilfordii HOM05D000361 ORTHO05D004243 5.4e-69 265.0 226 62.8
Haze_05039 Corylus avellana HOM05D000361 ORTHO05D004243 1.6e-68 263.5 234 61.5
Cfa005802 Carpinus fangiana HOM05D000361 ORTHO05D005006 2.1e-68 263.1 234 61.5
Manes.01G227700 Manihot esculenta HOM05D000361 ORTHO05D004243 2.7e-68 262.7 227 61.2
Nitab4.5_0011075g0020 Nicotiana tabacum HOM05D000361 ORTHO05D004243 4.6e-68 261.9 227 63.0
PSO017G2448 Papaver somniferum HOM05D000361 ORTHO05D004243 4.6e-68 261.9 234 60.7
arahy.Tifrunner.gnm1.ann1.G7NAMC Arachis hypogaea HOM05D000361 ORTHO05D004243 6.0e-68 261.5 234 61.5
Gohir.A11G109900 Gossypium hirsutum HOM05D000361 ORTHO05D004243 6.0e-68 261.5 227 61.2
PSO063G6259 Papaver somniferum HOM05D000361 ORTHO05D004243 1.0e-67 260.8 227 62.6
Potri.002G196300 Populus trichocarpa HOM05D000361 ORTHO05D004243 1.3e-67 260.4 227 62.1
CiPaw.07G117400 Carya illinoinensis HOM05D000361 ORTHO05D004243 1.7e-67 260.0 227 62.6
Gorai.007G122900 Gossypium raimondii HOM05D000361 ORTHO05D004243 2.3e-67 259.6 227 60.8
Potri.014G120900 Populus trichocarpa HOM05D000361 ORTHO05D004243 2.3e-67 259.6 227 62.6
Aqoxy3G01218 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 3.9e-67 258.8 227 61.7
Ciclev10010795m.g Citrus clementina HOM05D000361 ORTHO05D004243 5.1e-67 258.5 227 61.7
CANSAT25G2078 Cannabis sativa HOM05D000361 ORTHO05D004243 8.6e-67 257.7 247 57.9
Manes.05G003200 Manihot esculenta HOM05D000361 ORTHO05D004243 1.9e-66 256.5 229 61.6
Gohir.D11G114600 Gossypium hirsutum HOM05D000361 ORTHO05D004243 2.5e-66 256.1 227 60.4
Aqoxy3G02976 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 7.3e-66 254.6 227 62.1
Nitab4.5_0001301g0010 Nicotiana tabacum HOM05D000361 ORTHO05D004243 2.1e-65 253.1 227 62.1
COL.COLO4_23233 Corchorus olitorius HOM05D000361 ORTHO05D004243 2.8e-65 252.7 227 59.5
DCAR_012354 Daucus carota HOM05D000361 ORTHO05D004243 3.6e-65 252.3 225 60.9
Psat6g161800 Pisum sativum HOM05D000361 ORTHO05D004243 1.1e-64 250.8 228 61.4
Ca_10285_v3 Cicer arietinum L. HOM05D000361 ORTHO05D004243 1.8e-64 250.0 228 60.1
Glyma.10G013400 Glycine max HOM05D000361 ORTHO05D004243 2.4e-64 249.6 223 60.5
Cc03_g12210 Coffea canephora HOM05D000361 ORTHO05D004243 4.0e-64 248.8 152 84.9
Glyma.02G012800 Glycine max HOM05D000361 ORTHO05D004243 4.0e-64 248.8 223 60.1
TPR.G19758 Trifolium pratense HOM05D000361 ORTHO05D004243 4.0e-64 248.8 228 61.0
VMungo0720G0598 Vigna mungo HOM05D000361 ORTHO05D004243 4.0e-64 248.8 226 59.7
Hund09630 Selenicereus undatus HOM05D000361 ORTHO05D004243 5.2e-64 248.4 228 59.6
Medtr1g087100 Medicago truncatula HOM05D000361 ORTHO05D004243 8.9e-64 247.7 224 60.7
Phvul.007G214400 Phaseolus vulgaris HOM05D000361 ORTHO05D004243 8.9e-64 247.7 223 60.5
Lj5g0013347 Lotus japonicus HOM05D000361 ORTHO05D004243 1.2e-63 247.3 228 57.9
FvH4_5g39210 Fragaria vesca HOM05D000361 ORTHO05D004243 2.6e-63 246.1 227 59.9
CARHR249640 Cardamine hirsuta HOM05D000361 ORTHO05D004243 7.6e-63 244.6 230 58.7
SGA_v2.0_scaffold36G14324 Striga asiatica HOM05D000361 ORTHO05D004243 9.9e-63 244.2 227 60.4
Ah.10g031040 Amaranthus hybridus HOM05D000361 ORTHO05D004243 1.3e-62 243.8 230 59.1
AUR62011807 Chenopodium quinoa HOM05D000361 ORTHO05D004243 1.7e-62 243.4 230 58.7
Carub.0006s3520 Capsella rubella HOM05D000361 ORTHO05D004243 2.2e-62 243.0 260 53.8
arahy.Tifrunner.gnm1.ann1.N0EKR1 Arachis hypogaea HOM05D000361 ORTHO05D004243 4.9e-62 241.9 268 53.4
AT4G02030 Arabidopsis thaliana HOM05D000361 ORTHO05D004243 6.4e-62 241.5 255 52.5
Os03g0737800 Oryza sativa ssp. japonica HOM05D000361 ORTHO05D004243 8.4e-62 241.1 227 57.7
RcHm_v2.0_Chr7g0241471 Rosa chinensis HOM05D000361 ORTHO05D004243 1.9e-61 240.0 227 59.0
Peaxi162Scf00691g00222 Petunia axillaris HOM05D000361 ORTHO05D004243 2.4e-61 239.6 227 61.2
Oeu008471.2 Olea europaea HOM05D000361 ORTHO05D004243 4.1e-61 238.8 227 59.5
Thhalv10028443m.g Eutrema salsugineum HOM05D000361 ORTHO05D004243 5.4e-61 238.4 229 58.1
Sp6g01910 Schrenkiella parvula HOM05D000361 ORTHO05D004243 5.4e-61 238.4 259 53.3
AUR62024653 Chenopodium quinoa HOM05D000361 ORTHO05D004243 7.1e-61 238.0 230 57.0
ClCG07G000710 Citrullus lanatus HOM05D000361 ORTHO05D004243 7.1e-61 238.0 223 59.2
Lalb_Chr06g0166851 Lupinus albus HOM05D000361 ORTHO05D004243 7.1e-61 238.0 224 59.4
AL6G51220 Arabidopsis lyrata HOM05D000361 ORTHO05D004243 9.2e-61 237.7 258 51.9
CDE11G0331 Ceratophyllum demersum HOM05D000361 ORTHO05D004243 1.6e-60 236.9 227 56.4
ClCG10G006350 Citrullus lanatus HOM05D000361 ORTHO05D004243 3.5e-60 235.7 227 57.3
Sabra14G0089600 Salix brachista HOM05D000361 ORTHO05D005006 4.6e-60 235.3 227 59.9
EL10As5g23529 Beta vulgaris HOM05D000361 ORTHO05D004243 8.7e-59 231.1 226 58.0
THA.LOC104799236 Tarenaya hassleriana HOM05D000361 ORTHO05D004243 3.3e-58 229.2 226 58.8
THA.LOC104801306 Tarenaya hassleriana HOM05D000361 ORTHO05D004243 3.3e-58 229.2 230 57.4
FAN08G2818 Fragaria x ananassa HOM05D000361 ORTHO05D004243 4.3e-58 228.8 227 57.3
Aa31LG5G1680 Aethionema arabicum HOM05D000361 ORTHO05D004243 7.3e-58 228.0 229 56.3
ECA236G0422 Erigeron canadensis HOM05D000361 ORTHO05D005006 9.6e-58 227.6 223 59.2
Sabra02G0160700 Salix brachista HOM05D000361 ORTHO05D004243 4.7e-57 225.3 228 57.0
Migut.N00925 Erythranthe guttata HOM05D000361 ORTHO05D004243 3.1e-56 222.6 227 56.8
A09p01480 Brassica napus HOM05D000361 ORTHO05D004243 2.0e-55 219.9 229 55.9
BcaC04g24028 Brassica carinata HOM05D000361 ORTHO05D004243 7.6e-55 218.0 229 55.5
C09p01600 Brassica napus HOM05D000361 ORTHO05D004243 7.6e-55 218.0 229 55.5
HanXRQChr15g0464131 Helianthus annuus HOM05D000361 ORTHO05D004243 9.9e-55 217.6 246 55.3
BraA09t35809Z Brassica rapa HOM05D000361 ORTHO05D004243 1.3e-54 217.2 228 54.4
SalBow2G3626 Salvia bowleyana HOM05D000361 ORTHO05D004243 1.7e-54 216.9 155 72.3
BcaB01g02087 Brassica carinata HOM05D000361 ORTHO05D004243 4.9e-54 215.3 229 55.5
BolC9t53093H Brassica oleracea HOM05D000361 ORTHO05D004243 4.9e-54 215.3 228 53.9
Aqoxy328s001 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 1.4e-53 213.8 227 54.2
Lj1g0012423 Lotus japonicus HOM05D000361 ORTHO05D004243 5.4e-53 211.8 230 53.5
Oeu041216.1 Olea europaea HOM05D000361 ORTHO05D004243 8.7e-51 204.5 156 67.9
FAN18G4464 Fragaria x ananassa HOM05D000361 ORTHO05D004243 1.9e-50 203.4 230 53.0
unitig_736.g22938 Utricularia gibba HOM05D000361 ORTHO05D004243 1.9e-50 203.4 226 51.8
FAN04G1824 Fragaria x ananassa HOM05D000361 ORTHO05D004243 9.6e-50 201.1 236 53.8
HPP92_004593 Vanilla planifolia HOM05D000361 ORTHO05D004243 1.6e-49 200.3 239 49.0
Psat3g020160 Pisum sativum HOM05D000361 ORTHO05D004243 4.8e-49 198.7 234 52.1
arahy.Tifrunner.gnm1.ann1.KULZ0F Arachis hypogaea HOM05D000361 ORTHO05D004243 4.0e-48 195.7 222 52.7
Cc00_g34370 Coffea canephora HOM05D000361 ORTHO05D004243 7.6e-47 191.4 115 85.2
AagrBONN_evm.TU.Sc2ySwM_228.3730 Anthoceros agrestis HOM05D000361 ORTHO05D004243 1.4e-45 187.2 226 45.1
arahy.Tifrunner.gnm1.ann1.66RZQ8 Arachis hypogaea HOM05D000361 ORTHO05D004243 1.4e-45 187.2 228 50.4
VMungo1383G3239 Vigna mungo HOM05D000361 ORTHO05D004243 3.0e-43 179.5 237 46.4
TPR.G4118 Trifolium pratense HOM05D000361 ORTHO05D004243 4.3e-42 175.6 235 45.1
Sc05g0000420 Simmondsia chinensis HOM05D000361 ORTHO05D004243 1.8e-40 170.2 150 57.3
Lsat_1_v5_gn_1_35460 Lactuca sativa HOM05D000361 ORTHO05D004243 9.0e-40 167.9 233 48.5
Zm00001eb056500 Zea mays HOM05D000361 ORTHO05D004243 9.0e-40 167.9 227 44.9
Pp3c12_23510 Physcomitrium patens HOM05D000361 ORTHO05D004243 1.2e-39 167.5 232 43.5
Mapoly0167s0022 Marchantia polymorpha HOM05D000361 ORTHO05D004243 9.9e-39 164.5 235 43.8
Lj2A1205T44 Lonicera japonica HOM05D000361 ORTHO05D004243 2.1e-36 156.8 283 41.7
SMO195G0031 Selaginella moellendorffii HOM05D000361 ORTHO05D004243 2.1e-36 156.8 255 41.2
SMO116G0335 Selaginella moellendorffii HOM05D000361 ORTHO05D004243 6.0e-36 155.2 255 40.8
Cc00_g34360 Coffea canephora HOM05D000361 ORTHO05D004243 3.0e-35 152.9 91 85.7
CDE05G1119 Ceratophyllum demersum HOM05D001444 ORTHO05D003766 2.8e-33 146.4 156 52.6
Lalb_Chr15g0078161 Lupinus albus HOM05D000361 ORTHO05D004243 5.3e-32 142.1 151 53.0
Pp3c3_36800 Physcomitrium patens HOM05D000361 ORTHO05D004243 1.5e-31 140.6 196 39.8
DCAR_005760 Daucus carota HOM05D000361 ORTHO05D004243 4.9e-30 135.6 115 59.1
Oeu049914.1 Olea europaea HOM05D000361 ORTHO05D004243 2.5e-26 123.2 116 53.4
CBR_g48220 Chara braunii HOM05D000361 ORTHO05D004243 5.7e-26 122.1 243 35.0
COL.COLO4_26725 Corchorus olitorius HOM05D000361 ORTHO05D004243 8.2e-25 118.2 98 54.1
BcaC04g24029 Brassica carinata HOM05D000361 ORTHO05D004243 2.9e-22 109.8 113 54.0
Dinv10096 Davidia involucrata HOM05D000361 ORTHO05D004243 4.8e-17 92.4 55 81.8
Actinidia04687 Actinidia chinensis HOM05D000361 ORTHO05D004243 6.3e-17 92.0 110 49.1
Actinidia27762 Actinidia chinensis HOM05D000361 ORTHO05D004243 6.3e-17 92.0 110 49.1
SEGI_09541 Sequoiadendron giganteum HOM05D000361 ORTHO05D004243 3.4e-15 86.3 71 63.4
Lalb_Chr15g0078171 Lupinus albus HOM05D000361 ORTHO05D004243 7.7e-15 85.1 76 61.8
Glyma.19G216151 Glycine max HOM05D000361 ORTHO05D004243 2.9e-14 83.2 88 54.5
Phvul.001G212700 Phaseolus vulgaris HOM05D000361 ORTHO05D004243 4.2e-13 79.3 108 43.5
Actinidia04728 Actinidia chinensis HOM05D000361 ORTHO05D004243 2.3e-11 73.6 112 41.1
SHI15042 Sapria himalayana HOM05D000361 ORTHO05D004243 7.4e-10 68.6 117 41.9
Dinv10097 Davidia involucrata HOM05D000361 ORTHO05D004243 8.2e-09 65.1 80 52.5
Dinv10095 Davidia involucrata HOM05D000361 ORTHO05D004243 2.6e-07 60.1 36 83.3
CAN.G777.11 Capsicum annuum HOM05D000361 ORTHO05D004243 1.7e-06 57.4 62 58.1
Lsat_1_v5_gn_0_31980 Lactuca sativa HOM05D000329 ORTHO05D000833 8.5e-06 55.1 43 69.8


User provided reference genes

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