Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 2.3e-96 355.5 179 100.0
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.3e-78 296.6 179 81.6
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 4.9e-78 294.7 179 81.6
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 2.4e-77 292.4 169 85.2
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 5.4e-77 291.2 179 78.8
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 5.4e-77 291.2 179 81.0
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 7.1e-77 290.8 179 83.2
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 1.2e-76 290.0 179 81.0
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 1.2e-76 290.0 179 78.8
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 1.6e-76 289.7 179 78.8
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 2.1e-76 289.3 179 82.1
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 2.7e-76 288.9 179 80.4
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 4.6e-76 288.1 179 78.2
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 7.8e-76 287.3 178 79.8
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 1.3e-75 286.6 180 80.6
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 1.7e-75 286.2 178 78.1
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 5.1e-75 284.6 179 80.4
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 5.1e-75 284.6 179 80.4
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 8.7e-75 283.9 178 78.7
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 1.1e-74 283.5 179 78.2
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 1.5e-74 283.1 178 79.2
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 1.5e-74 283.1 179 79.3
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 1.9e-74 282.7 174 81.6
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 1.9e-74 282.7 171 81.3
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 1.9e-74 282.7 179 79.3
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 1.9e-74 282.7 179 80.4
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 2.5e-74 282.3 175 81.1
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 2.5e-74 282.3 177 79.1
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 3.3e-74 282.0 178 77.0
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 3.3e-74 282.0 177 81.4
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 3.3e-74 282.0 179 78.2
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 3.3e-74 282.0 179 78.8
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 4.3e-74 281.6 179 80.4
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 4.3e-74 281.6 178 76.4
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 7.3e-74 280.8 179 78.2
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 7.3e-74 280.8 175 80.6
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 2.8e-73 278.9 173 81.5
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 3.6e-73 278.5 179 78.8
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 4.8e-73 278.1 179 78.2
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 4.8e-73 278.1 179 76.0
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 6.2e-73 277.7 175 79.4
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 1.1e-72 276.9 179 76.5
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 1.4e-72 276.6 179 75.4
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 1.4e-72 276.6 179 76.0
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 1.4e-72 276.6 179 76.5
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 1.4e-72 276.6 173 78.6
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 1.4e-72 276.6 178 78.7
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 1.4e-72 276.6 179 77.1
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 1.8e-72 276.2 173 79.2
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 1.8e-72 276.2 171 82.5
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 4.0e-72 275.0 179 76.0
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 4.0e-72 275.0 180 76.1
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 4.0e-72 275.0 169 79.9
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 4.0e-72 275.0 180 79.4
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 9.0e-72 273.9 179 77.1
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 9.0e-72 273.9 179 74.9
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 9.0e-72 273.9 171 80.7
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 1.2e-71 273.5 168 81.0
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 1.2e-71 273.5 171 80.1
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 1.5e-71 273.1 179 75.4
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.5e-71 271.6 179 75.4
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 5.8e-71 271.2 174 75.9
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 5.8e-71 271.2 179 75.4
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 7.6e-71 270.8 175 77.1
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 9.9e-71 270.4 178 75.8
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 1.3e-70 270.0 179 74.3
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 1.7e-70 269.6 179 74.3
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 3.8e-70 268.5 179 76.0
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.9e-70 268.1 179 75.4
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.9e-70 268.1 179 75.4
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 8.4e-70 267.3 179 74.9
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 8.4e-70 267.3 175 76.6
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 1.9e-69 266.2 179 74.9
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 2.4e-69 265.8 179 74.3
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 3.2e-69 265.4 179 73.7
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 7.1e-69 264.2 180 72.8
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 9.3e-69 263.8 179 73.7
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 1.2e-68 263.5 168 78.6
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 1.6e-68 263.1 179 73.2
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.6e-68 263.1 179 74.3
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.6e-68 263.1 179 73.7
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 1.6e-68 263.1 176 73.9
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.1e-68 262.7 179 73.7
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 2.7e-68 262.3 175 73.7
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 3.5e-68 261.9 179 74.9
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.5e-68 261.9 179 73.2
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 4.6e-68 261.5 168 78.6
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 4.6e-68 261.5 171 76.6
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 1.0e-67 260.4 179 73.2
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 1.3e-67 260.0 170 75.9
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 1.8e-67 259.6 173 75.1
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 1.8e-67 259.6 182 71.4
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 2.3e-67 259.2 179 71.5
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 2.3e-67 259.2 179 73.7
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 3.0e-67 258.8 179 73.7
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 3.0e-67 258.8 193 68.9
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 3.0e-67 258.8 157 83.4
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 3.9e-67 258.5 176 75.0
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 1.5e-66 256.5 178 74.2
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 2.5e-66 255.8 172 76.2
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 4.3e-66 255.0 207 65.7
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 9.6e-66 253.8 175 72.0
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 9.6e-66 253.8 168 74.4
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 1.3e-65 253.4 177 71.8
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 2.1e-65 252.7 175 71.4
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 2.8e-65 252.3 175 72.0
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 4.8e-65 251.5 175 71.4
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 4.8e-65 251.5 176 74.4
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 4.8e-65 251.5 168 74.4
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 8.1e-65 250.8 175 71.4
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 1.8e-64 249.6 160 77.5
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 2.4e-64 249.2 174 71.8
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 3.1e-64 248.8 221 62.9
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 6.9e-64 247.7 177 70.6
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 1.2e-63 246.9 170 71.8
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 2.6e-63 245.7 206 64.1
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 2.6e-63 245.7 175 72.0
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 5.8e-63 244.6 170 70.6
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 1.3e-62 243.4 175 68.6
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 2.2e-62 242.7 170 71.2
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 1.4e-61 240.0 170 69.4
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 1.3e-59 233.4 175 67.4
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 3.9e-59 231.9 161 73.9
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 4.3e-58 228.4 150 76.7
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 4.3e-58 228.4 150 76.7
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 6.9e-56 221.1 147 74.8
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 6.5e-54 214.5 175 65.1
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 1.8e-48 196.4 120 85.0
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 4.1e-48 195.3 171 62.6
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 3.8e-46 188.7 162 57.4
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.5e-45 186.0 170 62.4
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 2.1e-44 183.0 168 54.2
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 2.7e-44 182.6 162 55.6
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 6.1e-44 181.4 165 54.5
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 3.0e-43 179.1 165 54.5
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 8.8e-43 177.6 115 79.1
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 2.0e-42 176.4 115 76.5
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 4.3e-42 175.3 117 79.5
CAN.G551.74 Capsicum annuum HOM05D004389 ORTHO05D005457 2.2e-38 162.9 104 77.9
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.2e-38 162.9 158 58.2
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.0e-35 154.1 185 51.9
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 8.8e-35 151.0 222 41.0
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 2.6e-34 149.4 172 48.8
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 4.4e-34 148.7 165 49.1
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 5.7e-34 148.3 166 48.8
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 3.7e-33 145.6 86 82.6
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 7.0e-32 141.4 83 80.7
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 9.1e-32 141.0 83 80.7
Aqoxy5G02271 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 1.1e-29 134.0 94 71.3
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.1e-29 134.0 98 71.4
Nitab4.5_0006964g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.9e-29 133.3 93 69.9
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 3.2e-29 132.5 139 52.5
TPR.G30972 Trifolium pratense HOM05D004389 ORTHO05D005457 7.4e-26 121.3 86 67.4
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 4.1e-24 115.5 117 55.6
FvH4_6g10990 Fragaria vesca HOM05D004389 ORTHO05D005457 3.5e-23 112.5 97 58.8
QL07p009462 Quercus lobata HOM05D004389 ORTHO05D005457 1.7e-22 110.2 75 73.3
Zm00001eb380920 Zea mays HOM05D004389 ORTHO05D005457 1.5e-21 107.1 85 62.4
Actinidia39666 Actinidia chinensis HOM05D004389 ORTHO05D056204 3.6e-20 102.4 138 48.6
vmacro15154 Vaccinium macrocarpon HOM05D004389 ORTHO05D022937 1.4e-16 90.5 71 64.8
SHI18161 Sapria himalayana HOM05D004389 ORTHO05D005457 1.2e-12 77.4 52 67.3
Cfa025624 Carpinus fangiana HOM05D004389 ORTHO05D125512 2.1e-12 76.6 216 31.5
vmacro17239 Vaccinium macrocarpon HOM05D040504 ORTHO05D426804 8.0e-12 74.7 160 35.0
Medtr6g452950 Medicago truncatula HOM05D029366 ORTHO05D022937 1.8e-11 73.6 42 76.2
HPP92_010328 Vanilla planifolia HOM05D004389 ORTHO05D022937 5.2e-11 72.0 42 71.4
QL07p009230 Quercus lobata HOM05D004389 ORTHO05D005457 1.2e-10 70.9 103 42.7
CDE04G0800 Ceratophyllum demersum HOM05D000328 ORTHO05D000191 2.9e-06 56.2 33 75.8


User provided reference genes

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