Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g33440 Coffea canephora HOM05D006315 ORTHO05D008052 1.0e-196 689.9 351 100.0
Oeu020852.1 Olea europaea HOM05D006315 ORTHO05D008052 1.8e-145 519.6 351 76.4
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 7.7e-144 514.2 351 78.9
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 2.8e-141 505.8 360 73.3
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 4.7e-141 505.0 351 73.8
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 6.8e-140 501.1 351 74.1
Nitab4.5_0004395g0040 Nicotiana tabacum HOM05D006315 ORTHO05D008052 6.8e-140 501.1 350 76.3
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 2.0e-139 499.6 351 75.8
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 2.0e-139 499.6 350 72.9
Peaxi162Scf00037g00325 Petunia axillaris HOM05D006315 ORTHO05D008052 2.2e-138 496.1 352 75.9
PGSC0003DMG400018995 Solanum tuberosum HOM05D006315 ORTHO05D008052 3.7e-138 495.4 349 74.2
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 1.1e-137 493.8 351 72.6
Actinidia05703 Actinidia chinensis HOM05D006315 ORTHO05D008052 7.8e-136 487.6 351 73.5
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 3.9e-135 485.3 355 72.7
Gohir.D11G275200 Gossypium hirsutum HOM05D006315 ORTHO05D008052 8.6e-135 484.2 351 71.8
Gorai.007G297000 Gossypium raimondii HOM05D006315 ORTHO05D008052 8.6e-135 484.2 351 71.8
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 1.1e-134 483.8 360 72.2
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 5.6e-134 481.5 351 72.6
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 3.1e-132 475.7 352 70.5
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 5.2e-132 474.9 335 74.9
MSTRG.16964 Avicennia marina HOM05D006315 ORTHO05D008052 8.9e-132 474.2 323 74.9
CiPaw.07G017800 Carya illinoinensis HOM05D006315 ORTHO05D008052 1.2e-131 473.8 353 70.3
COL.COLO4_13471 Corchorus olitorius HOM05D006315 ORTHO05D008052 4.4e-131 471.9 302 78.1
Manes.09G167100 Manihot esculenta HOM05D006315 ORTHO05D008052 4.9e-130 468.4 349 70.8
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 6.4e-130 468.0 354 67.8
Ciclev10001688m.g Citrus clementina HOM05D006315 ORTHO05D008052 8.3e-130 467.6 356 70.2
RcHm_v2.0_Chr3g0454751 Rosa chinensis HOM05D006315 ORTHO05D008052 8.3e-130 467.6 355 68.7
TWI36G1375 Tripterygium wilfordii HOM05D006315 ORTHO05D008052 1.1e-129 467.2 353 72.0
vmacro05019 Vaccinium macrocarpon HOM05D006315 ORTHO05D008052 1.9e-129 466.5 255 88.6
Cfa006589 Carpinus fangiana HOM05D006315 ORTHO05D008052 5.4e-129 464.9 351 70.9
MD12G1219300 Malus domestica HOM05D006315 ORTHO05D008052 7.0e-129 464.5 356 68.8
PGR083G2010 Punica granatum HOM05D006315 ORTHO05D008052 1.2e-128 463.8 348 69.5
Migut.B01035 Erythranthe guttata HOM05D006315 ORTHO05D008052 2.7e-128 462.6 351 70.7
FvH4_6g05840 Fragaria vesca HOM05D006315 ORTHO05D008052 2.7e-128 462.6 331 70.1
FAN09G2245 Fragaria x ananassa HOM05D006315 ORTHO05D008052 3.5e-128 462.2 351 68.4
FAN02G1008 Fragaria x ananassa HOM05D006315 ORTHO05D008052 4.6e-128 461.8 348 67.8
FAN05G4943 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.0e-127 460.7 331 70.1
Cpa.g.sc48.53 Carica papaya HOM05D006315 ORTHO05D008052 1.7e-127 459.9 314 77.7
Potri.013G020800 Populus trichocarpa HOM05D006315 ORTHO05D008052 2.3e-127 459.5 344 69.8
Sabra13G0023200 Salix brachista HOM05D006315 ORTHO05D008052 3.0e-127 459.1 351 69.2
AUR62000828 Chenopodium quinoa HOM05D006315 ORTHO05D008052 3.9e-127 458.8 353 68.6
Aqoxy6G00442 Aquilegia oxysepala HOM05D006315 ORTHO05D008052 1.5e-126 456.8 346 71.7
Eucgr.B01969 Eucalyptus grandis HOM05D006315 ORTHO05D008052 2.5e-126 456.1 352 67.6
FAN14G1304 Fragaria x ananassa HOM05D006315 ORTHO05D008052 3.3e-126 455.7 338 68.6
FAN14G3373 Fragaria x ananassa HOM05D006315 ORTHO05D008052 7.3e-126 454.5 338 68.6
SalBow8G0023 Salvia bowleyana HOM05D006315 ORTHO05D008052 7.3e-126 454.5 301 76.1
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 6.2e-125 451.4 352 68.8
HanXRQChr02g0046151 Helianthus annuus HOM05D006315 ORTHO05D008052 4.0e-124 448.7 351 64.7
FAN05G5779 Fragaria x ananassa HOM05D006315 ORTHO05D008052 8.9e-124 447.6 351 65.8
Sc06g0003310 Simmondsia chinensis HOM05D006315 ORTHO05D008052 1.2e-123 447.2 357 67.5
Aa31LG11G9300 Aethionema arabicum HOM05D006315 ORTHO05D008052 5.8e-123 444.9 308 71.1
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 5.8e-123 444.9 350 67.4
A09p05350 Brassica napus HOM05D006315 ORTHO05D008052 3.2e-121 439.1 340 67.4
BraA09t36173Z Brassica rapa HOM05D006315 ORTHO05D008052 3.2e-121 439.1 340 67.4
PSO675G8687 Papaver somniferum HOM05D006315 ORTHO05D008052 4.1e-121 438.7 304 73.7
Ah.06g189370 Amaranthus hybridus HOM05D006315 ORTHO05D008052 7.1e-121 438.0 324 70.7
AUR62005146 Chenopodium quinoa HOM05D006315 ORTHO05D008052 3.5e-120 435.6 388 61.6
C09p05830 Brassica napus HOM05D006315 ORTHO05D008052 4.6e-120 435.3 336 68.8
BolC9t53510H Brassica oleracea HOM05D006315 ORTHO05D008052 4.6e-120 435.3 336 68.8
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 1.0e-119 434.1 300 71.3
CARHR186120 Cardamine hirsuta HOM05D006315 ORTHO05D008052 1.3e-119 433.7 299 71.9
unitig_37.g12631 Utricularia gibba HOM05D006315 ORTHO05D008052 1.3e-119 433.7 342 67.0
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 1.7e-119 433.3 349 63.9
Thhalv10004542m.g Eutrema salsugineum HOM05D006315 ORTHO05D008052 3.0e-119 432.6 300 71.0
ECA236G1566 Erigeron canadensis HOM05D006315 ORTHO05D008052 5.1e-119 431.8 256 79.3
Solyc01g098990.4 Solanum lycopersicum HOM05D006315 ORTHO05D008052 5.1e-119 431.8 354 66.4
Sp2g20750 Schrenkiella parvula HOM05D006315 ORTHO05D008052 8.6e-119 431.0 300 70.0
Carub.0006s2500 Capsella rubella HOM05D006315 ORTHO05D008052 1.5e-118 430.3 303 70.6
AT5G27560 Arabidopsis thaliana HOM05D006315 ORTHO05D008052 2.5e-118 429.5 302 72.2
Psat6g151200 Pisum sativum HOM05D006315 ORTHO05D008052 7.3e-118 427.9 348 64.1
Hund07070 Selenicereus undatus HOM05D006315 ORTHO05D008052 7.3e-118 427.9 355 66.8
MBI01_g44539_MAGBIO Magnolia biondii HOM05D006315 ORTHO05D008052 1.6e-117 426.8 255 82.7
ClCG02G015800 Citrullus lanatus HOM05D006315 ORTHO05D008052 2.1e-117 426.4 347 65.4
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 2.8e-117 426.0 348 64.1
Glyma.10G154300 Glycine max HOM05D006315 ORTHO05D008052 4.7e-117 425.2 349 63.9
Ca_10111_v3 Cicer arietinum L. HOM05D006315 ORTHO05D008052 2.3e-116 422.9 300 72.7
CsaV3_2G005300 Cucumis sativus L. HOM05D006315 ORTHO05D008052 2.3e-116 422.9 347 64.6
Lj5g0002172 Lotus japonicus HOM05D006315 ORTHO05D008052 4.0e-116 422.2 350 66.3
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 6.8e-116 421.4 302 69.5
TPR.G6112 Trifolium pratense HOM05D006315 ORTHO05D008052 6.8e-116 421.4 334 65.3
Medtr1g082900 Medicago truncatula HOM05D006315 ORTHO05D008052 2.6e-115 419.5 344 64.2
DCAR_022164 Daucus carota HOM05D006315 ORTHO05D008052 4.4e-115 418.7 356 62.1
arahy.Tifrunner.gnm1.ann1.9IE074 Arachis hypogaea HOM05D006315 ORTHO05D008052 5.8e-115 418.3 353 64.6
Glyma.20G234000 Glycine max HOM05D006315 ORTHO05D008052 7.6e-115 417.9 344 63.7
ATR1120G073 Amborella trichopoda HOM05D006315 ORTHO05D008052 2.2e-114 416.4 311 67.5
Sed0013855 Sechium edule HOM05D006315 ORTHO05D008052 2.9e-114 416.0 331 68.3
PSO541G4223 Papaver somniferum HOM05D006315 ORTHO05D008052 1.2e-112 410.6 312 68.9
SGA_v2.0_scaffold13G06358 Striga asiatica HOM05D006315 ORTHO05D008052 4.6e-112 408.7 291 70.8
Gohir.A11G265000 Gossypium hirsutum HOM05D006315 ORTHO05D008052 4.7e-109 398.7 229 83.8
MELO3C004257.2 Cucumis melo HOM05D006315 ORTHO05D008052 9.9e-107 391.0 313 65.5
Atru.chr2.406 Acer truncatum HOM05D006315 ORTHO05D008052 6.4e-106 388.3 361 62.3
Haze_04196 Corylus avellana HOM05D006315 ORTHO05D008052 2.9e-98 362.8 308 64.3
SEGI_29864 Sequoiadendron giganteum HOM05D006315 ORTHO05D008052 1.5e-94 350.5 350 54.3
EL10Ac4g09351 Beta vulgaris HOM05D006315 ORTHO05D008052 3.6e-93 345.9 289 63.0
arahy.Tifrunner.gnm1.ann1.SMKB8G Arachis hypogaea HOM05D006315 ORTHO05D008052 3.1e-84 316.2 315 58.4
Nitab4.5_0000137g0320 Nicotiana tabacum HOM05D006315 ORTHO05D008052 5.3e-84 315.5 173 86.7
Zm00001eb377150 Zea mays HOM05D006315 ORTHO05D008052 1.0e-82 311.2 255 62.0
AagrBONN_evm.TU.Sc2ySwM_368.1535 Anthoceros agrestis HOM05D006315 ORTHO05D008052 1.3e-82 310.8 293 55.3
Lj5A533G15 Lonicera japonica HOM05D006315 ORTHO05D008052 2.0e-75 287.0 163 84.0
Mapoly0046s0092 Marchantia polymorpha HOM05D006315 ORTHO05D008052 3.4e-75 286.2 321 48.0
Pp3c1_23410 Physcomitrium patens HOM05D006315 ORTHO05D008052 1.5e-70 270.8 346 43.4
Eucgr.B01970 Eucalyptus grandis HOM05D006315 ORTHO05D008052 4.8e-69 265.8 187 69.5
Eucgr.B01875 Eucalyptus grandis HOM05D006315 ORTHO05D008052 4.2e-65 252.7 144 82.6
SMO116G0320 Selaginella moellendorffii HOM05D006315 ORTHO05D008052 1.4e-60 237.7 224 50.4
Actinidia23634 Actinidia chinensis HOM05D006315 ORTHO05D008052 5.5e-57 225.7 132 84.8
HPP92_002820 Vanilla planifolia HOM05D006315 ORTHO05D008052 8.8e-55 218.4 232 54.3
Lj5C470G0 Lonicera japonica HOM05D006315 ORTHO05D008052 1.3e-53 214.5 126 81.0
Lj5C532G5 Lonicera japonica HOM05D006315 ORTHO05D008052 1.3e-53 214.5 126 81.0
HPP92_002878 Vanilla planifolia HOM05D006315 ORTHO05D008052 3.5e-51 206.5 132 75.8
Cre17.g739550 Chlamydomonas reinhardtii HOM05D006315 ORTHO05D008052 1.6e-43 181.0 282 36.9
Hma1.2p1_0928F.1_g237790 Hydrangea macrophylla HOM05D006315 ORTHO05D008052 3.8e-42 176.4 168 61.3
MCO15G525 Micromonas commoda HOM05D006315 ORTHO05D008052 1.7e-37 161.0 308 33.1
PRCOL_00006277 Prasinoderma coloniale HOM05D006315 ORTHO05D008052 3.6e-32 143.3 238 37.4
EL10As4g23462 Beta vulgaris HOM05D006315 ORTHO05D008052 4.7e-32 142.9 107 71.0
Lj5A532G12 Lonicera japonica HOM05D006315 ORTHO05D008052 2.9e-26 123.6 202 42.1
Lj5P531T4 Lonicera japonica HOM05D006315 ORTHO05D008052 3.3e-25 120.2 83 71.1
Lj5P469T8 Lonicera japonica HOM05D006315 ORTHO05D008052 1.6e-19 101.3 53 88.7
Aa31LG11G9280 Aethionema arabicum HOM05D006315 ORTHO05D059511 1.1e-17 95.1 92 53.3
arahy.Tifrunner.gnm1.ann1.T3AGRQ Arachis hypogaea HOM05D006315 ORTHO05D008052 1.0e-15 88.6 73 58.9
Lj5A470G9 Lonicera japonica HOM05D006315 ORTHO05D008052 1.8e-15 87.8 127 44.1
Lj5A532G11 Lonicera japonica HOM05D006315 ORTHO05D008052 4.4e-14 83.2 127 42.5
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 3.7e-13 80.1 138 42.8
EL10Ac4g09000 Beta vulgaris HOM05D006315 ORTHO05D008052 2.7e-11 73.9 38 86.8
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 1.1e-07 62.0 39 71.8
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 1.1e-07 62.0 39 71.8
HPP92_002889 Vanilla planifolia HOM05D006315 ORTHO05D008052 3.1e-07 60.5 51 54.9
CSS0026722 Camellia sinensis var. sinensis HOM05D001207 ORTHO05D009015 1.5e-06 58.2 259 25.1
Duzib084G0831 Durio zibethinus HOM05D001237 ORTHO05D009110 4.4e-06 56.6 251 23.1


User provided reference genes

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