Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g33360 Coffea canephora HOM05D006774 ORTHO05D008411 6.9e-236 820.5 483 100.0
Sopen01g042680 Solanum pennellii HOM05D006774 ORTHO05D008411 9.6e-153 544.3 427 66.3
CSS0019331 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 5.3e-151 538.5 430 66.7
CAN.G1034.42 Capsicum annuum HOM05D006774 ORTHO05D008411 3.4e-150 535.8 432 65.0
PGSC0003DMG400024686 Solanum tuberosum HOM05D006774 ORTHO05D008411 1.7e-149 533.5 432 64.8
MSTRG.20428 Avicennia marina HOM05D006774 ORTHO05D008411 2.3e-146 523.1 431 63.1
Migut.N02011 Erythranthe guttata HOM05D006774 ORTHO05D008411 3.4e-142 509.2 428 64.3
TAR633G1323 Trochodendron aralioides HOM05D006774 ORTHO05D008411 7.7e-134 481.5 425 59.1
Lsat_1_v5_gn_9_86761 Lactuca sativa HOM05D006774 ORTHO05D008411 1.6e-131 473.8 400 60.2
Cfa006593 Carpinus fangiana HOM05D006774 ORTHO05D008411 6.7e-130 468.4 419 59.9
CSS0040526 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 4.8e-128 462.2 352 66.2
QL03p007112 Quercus lobata HOM05D006774 ORTHO05D008411 8.2e-128 461.5 433 57.7
Hund07075 Selenicereus undatus HOM05D006774 ORTHO05D008411 1.1e-127 461.1 437 55.8
EL10Ac4g09357 Beta vulgaris HOM05D006774 ORTHO05D008411 1.4e-127 460.7 429 56.6
MD12G1218600 Malus domestica HOM05D006774 ORTHO05D008411 8.5e-125 451.4 424 56.8
Ah.06g189400 Amaranthus hybridus HOM05D006774 ORTHO05D008411 2.5e-124 449.9 428 52.6
Cpa.g.sc48.60 Carica papaya HOM05D006774 ORTHO05D008411 6.1e-123 445.3 432 53.0
TWI56G0431 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 6.1e-123 445.3 434 55.1
CANSAT54G0432 Cannabis sativa HOM05D006774 ORTHO05D008411 7.9e-123 444.9 438 52.5
Eucgr.C01256 Eucalyptus grandis HOM05D006774 ORTHO05D008411 1.4e-122 444.1 425 56.0
Thecc.05G302500 Theobroma cacao HOM05D006774 ORTHO05D008411 1.8e-122 443.7 433 55.0
CiPaw.10G139100 Carya illinoinensis HOM05D006774 ORTHO05D008411 3.0e-122 443.0 442 52.9
vmacro05013 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 3.0e-122 443.0 355 65.6
vmacro23279 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 3.0e-122 443.0 355 65.6
Lj9C82T10 Lonicera japonica HOM05D006774 ORTHO05D008411 3.9e-122 442.6 351 65.2
arahy.Tifrunner.gnm1.ann1.ST8CS6 Arachis hypogaea HOM05D006774 ORTHO05D008411 1.5e-121 440.7 425 56.9
Lj9C83T13 Lonicera japonica HOM05D006774 ORTHO05D008411 1.5e-121 440.7 354 64.7
Aqoxy5G00494 Aquilegia oxysepala HOM05D006774 ORTHO05D008411 5.7e-121 438.7 397 53.7
Duzib177G0798 Durio zibethinus HOM05D006774 ORTHO05D008411 5.7e-121 438.7 428 54.9
PGR031G3046 Punica granatum HOM05D006774 ORTHO05D008411 7.4e-121 438.3 435 53.1
MD04G1204900 Malus domestica HOM05D006774 ORTHO05D008411 9.7e-121 438.0 428 55.1
HanXRQChr11g0338551 Helianthus annuus HOM05D006774 ORTHO05D008411 3.7e-120 436.0 424 55.4
Sc09g0003160 Simmondsia chinensis HOM05D006774 ORTHO05D008411 3.7e-120 436.0 428 53.7
RhsimUnG0226700 Rhododendron simsii HOM05D006774 ORTHO05D008411 4.8e-120 435.6 350 63.7
arahy.Tifrunner.gnm1.ann1.V1E923 Arachis hypogaea HOM05D006774 ORTHO05D008411 8.2e-120 434.9 428 56.5
Glyma.19G235000 Glycine max HOM05D006774 ORTHO05D008411 8.2e-120 434.9 431 56.1
Prupe.6G324900 Prunus persica HOM05D006774 ORTHO05D008411 1.8e-119 433.7 428 55.1
TWI12G1162 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 5.3e-119 432.2 433 53.8
PSO478G4979 Papaver somniferum HOM05D006774 ORTHO05D008411 9.1e-119 431.4 435 51.7
PSO782G5565 Papaver somniferum HOM05D006774 ORTHO05D008411 1.5e-118 430.6 435 50.6
Lj9C84T1 Lonicera japonica HOM05D006774 ORTHO05D008411 8.5e-117 424.9 337 64.4
FAN02G0725 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.1e-116 424.5 425 52.5
Atru.chr2.394 Acer truncatum HOM05D006774 ORTHO05D008411 1.4e-116 424.1 430 54.2
ClCG03G016980 Citrullus lanatus HOM05D006774 ORTHO05D008411 1.9e-116 423.7 427 53.2
FAN09G1854 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.9e-116 423.7 397 54.2
MBI04_g29615_MAGBIO Magnolia biondii HOM05D006774 ORTHO05D008411 4.2e-116 422.5 433 50.6
BcaB04g20150 Brassica carinata HOM05D006774 ORTHO05D008411 7.2e-116 421.8 433 52.2
FAN05G2700 Fragaria x ananassa HOM05D006774 ORTHO05D008411 9.4e-116 421.4 394 54.3
Glyma.03G237400 Glycine max HOM05D006774 ORTHO05D008411 9.4e-116 421.4 433 55.2
SpUn0004_0080 Schrenkiella parvula HOM05D006774 ORTHO05D008411 9.4e-116 421.4 432 52.5
SpUn0066_0030 Schrenkiella parvula HOM05D006774 ORTHO05D008411 9.4e-116 421.4 432 52.5
Potri.013G021500 Populus trichocarpa HOM05D006774 ORTHO05D008411 1.2e-115 421.0 435 53.8
FAN05G0244 Fragaria x ananassa HOM05D006774 ORTHO05D008411 2.7e-115 419.9 395 54.7
FvH4_6g06010 Fragaria vesca HOM05D006774 ORTHO05D008411 3.6e-115 419.5 395 53.7
THA.LOC104805877 Tarenaya hassleriana HOM05D006774 ORTHO05D008411 4.7e-115 419.1 431 53.1
Gohir.A13G107700 Gossypium hirsutum HOM05D006774 ORTHO05D008411 6.1e-115 418.7 425 52.0
BcaC09g49602 Brassica carinata HOM05D006774 ORTHO05D008411 1.4e-114 417.5 431 51.5
AL1G65540 Arabidopsis lyrata HOM05D006774 ORTHO05D008411 3.0e-114 416.4 426 55.2
Gorai.013G124300 Gossypium raimondii HOM05D006774 ORTHO05D008411 5.2e-114 415.6 423 52.5
Haze_04191 Corylus avellana HOM05D006774 ORTHO05D008411 6.7e-114 415.2 363 57.9
Carub.0002s0819 Capsella rubella HOM05D006774 ORTHO05D008411 1.1e-113 414.5 433 52.4
Lj1g0013332 Lotus japonicus HOM05D006774 ORTHO05D008411 1.1e-113 414.5 392 53.3
CARHR284430 Cardamine hirsuta HOM05D006774 ORTHO05D008411 1.5e-113 414.1 434 51.4
Thhalv10023440m.g Eutrema salsugineum HOM05D006774 ORTHO05D008411 1.5e-113 414.1 432 52.1
C01p34610 Brassica napus HOM05D006774 ORTHO05D008411 2.0e-113 413.7 431 51.0
BolC1t03432H Brassica oleracea HOM05D006774 ORTHO05D008411 2.0e-113 413.7 431 51.0
VMungo0540G2441 Vigna mungo HOM05D006774 ORTHO05D008411 4.4e-113 412.5 383 55.6
AT1G54990 Arabidopsis thaliana HOM05D006774 ORTHO05D008411 1.7e-112 410.6 426 54.0
BraA01t02861Z Brassica rapa HOM05D006774 ORTHO05D008411 1.4e-111 407.5 431 50.6
CsaV3_1G038960 Cucumis sativus L. HOM05D006774 ORTHO05D008411 5.3e-111 405.6 426 51.4
A01p27210 Brassica napus HOM05D006774 ORTHO05D008411 9.1e-111 404.8 431 50.3
Sed0009699 Sechium edule HOM05D006774 ORTHO05D008411 1.3e-109 401.0 426 50.5
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 5.0e-109 399.1 424 51.4
RcHm_v2.0_Chr3g0454971 Rosa chinensis HOM05D006774 ORTHO05D008411 1.1e-108 397.9 393 50.9
Ca_05814_v3 Cicer arietinum L. HOM05D006774 ORTHO05D008411 1.9e-108 397.1 425 51.5
Lalb_Chr18g0045661 Lupinus albus HOM05D006774 ORTHO05D008411 3.2e-108 396.4 434 51.4
Medtr7g113420 Medicago truncatula HOM05D006774 ORTHO05D008411 7.2e-108 395.2 435 50.1
Duzib128G0809 Durio zibethinus HOM05D006774 ORTHO05D008411 1.2e-107 394.4 438 50.0
Nn1g02268 Nelumbo nucifera HOM05D006774 ORTHO05D008411 1.2e-107 394.4 352 54.8
GSVIVG01000080001 Vitis vinifera HOM05D006774 ORTHO05D008411 8.0e-107 391.7 352 58.5
Manes.09G167600 Manihot esculenta HOM05D006774 ORTHO05D008411 1.4e-106 391.0 423 51.5
AUR62000820 Chenopodium quinoa HOM05D006774 ORTHO05D008411 3.3e-105 386.3 399 49.6
Phvul.006G091800 Phaseolus vulgaris HOM05D006774 ORTHO05D008411 5.7e-105 385.6 394 51.5
ATR0332G083 Amborella trichopoda HOM05D006774 ORTHO05D008411 9.7e-105 384.8 431 45.9
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 4.5e-102 375.9 379 52.2
Ciclev10001021m.g Citrus clementina HOM05D006774 ORTHO05D008411 1.3e-101 374.4 431 50.6
COL.COLO4_13460 Corchorus olitorius HOM05D006774 ORTHO05D008411 8.5e-101 371.7 350 53.4
Sabra13G0023900 Salix brachista HOM05D006774 ORTHO05D008411 2.4e-95 353.6 464 44.0
Dinv40294 Davidia involucrata HOM05D006774 ORTHO05D008411 9.1e-95 351.7 261 67.8
ECA236G1211 Erigeron canadensis HOM05D000208 ORTHO05D000130 7.7e-94 348.6 339 55.8
Gohir.D13G110900 Gossypium hirsutum HOM05D006774 ORTHO05D008411 4.9e-88 329.3 343 52.8
TPR.G33221 Trifolium pratense HOM05D006774 ORTHO05D008411 4.1e-87 326.2 346 52.3
CDE05G2690 Ceratophyllum demersum HOM05D006774 ORTHO05D008411 2.7e-86 323.6 423 39.2
Psat0s3041g0040 Pisum sativum HOM05D006774 ORTHO05D008411 7.3e-84 315.5 353 48.4
AUR62005151 Chenopodium quinoa HOM05D006774 ORTHO05D008411 1.0e-77 295.0 267 54.3
unitig_736.g22755 Utricularia gibba HOM05D006774 ORTHO05D008411 1.3e-77 294.7 429 40.8
Actinidia05698 Actinidia chinensis HOM05D006774 ORTHO05D008411 3.3e-60 236.9 182 67.6
PSO478G2742 Papaver somniferum HOM05D006774 ORTHO05D008411 9.9e-57 225.3 307 42.0
Pp3c11_22860 Physcomitrium patens HOM05D006774 ORTHO05D008411 1.9e-52 211.1 430 31.4
Peaxi162Scf00037g00517 Petunia axillaris HOM05D006774 ORTHO05D008411 5.6e-52 209.5 431 36.2
Zm00001eb197590 Zea mays HOM05D006774 ORTHO05D008411 1.7e-48 198.0 367 35.1
PSO782G1046 Papaver somniferum HOM05D006774 ORTHO05D008411 4.9e-48 196.4 285 41.8
Os11g0544100 Oryza sativa ssp. japonica HOM05D006774 ORTHO05D008411 1.6e-46 191.4 354 35.6
Nitab4.5_0000137g0150 Nicotiana tabacum HOM05D006774 ORTHO05D008411 1.1e-39 168.7 115 68.7
Solyc01g099120.4 Solanum lycopersicum HOM05D006774 ORTHO05D008411 1.1e-39 168.7 118 67.8
Atru.chr12.689 Acer truncatum HOM05D006774 ORTHO05D008411 1.9e-39 167.9 201 46.8
Nitab4.5_0005541g0040 Nicotiana tabacum HOM05D006774 ORTHO05D008411 1.2e-38 165.2 115 67.8
SMO145G0196 Selaginella moellendorffii HOM05D006774 ORTHO05D008411 6.2e-35 152.9 359 30.9
HPP92_006104 Vanilla planifolia HOM05D006774 ORTHO05D008411 6.5e-32 142.9 204 43.1
Oeu035485.2 Olea europaea HOM05D006774 ORTHO05D001341 1.6e-19 101.7 80 65.0
Oeu051834.1 Olea europaea HOM05D006774 ORTHO05D008411 3.2e-15 87.4 86 64.0
CSS0005750 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 2.3e-13 81.3 78 69.2
vmacro05012 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 2.0e-12 78.2 84 60.7
RhsimUnG0226800 Rhododendron simsii HOM05D006774 ORTHO05D008411 4.3e-12 77.0 83 61.4
vmacro23280 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 4.3e-12 77.0 84 59.5
Nitab4.5_0010934g0020 Nicotiana tabacum HOM05D006774 ORTHO05D008411 1.1e-10 72.4 65 55.4
TAR362G0529 Trochodendron aralioides HOM05D006774 ORTHO05D008411 4.5e-09 67.0 56 51.8
SEGI_31760 Sequoiadendron giganteum HOM05D006774 ORTHO05D008411 3.2e-07 60.8 78 57.7


User provided reference genes

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