Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g32990 Coffea canephora HOM05D003247 ORTHO05D019032 6.1e-45 183.7 90 100.0
Cc00_g15000 Coffea canephora HOM05D003247 ORTHO05D019032 9.2e-25 116.7 63 85.7
Cc08_g14920 Coffea canephora HOM05D003247 ORTHO05D003974 2.4e-20 102.1 69 75.4
Cc00_g15010 Coffea canephora HOM05D003247 ORTHO05D019032 8.9e-20 100.1 79 65.8
C04p29680 Brassica napus HOM05D003247 ORTHO05D003974 2.4e-17 92.0 70 67.1
BcaB07g31551 Brassica carinata HOM05D003247 ORTHO05D003974 3.2e-17 91.7 63 71.4
Lj8A219G33 Lonicera japonica HOM05D003247 ORTHO05D003974 3.2e-17 91.7 63 71.4
AL2G11370 Arabidopsis lyrata HOM05D003247 ORTHO05D003974 7.1e-17 90.5 63 69.8
AT1G63770 Arabidopsis thaliana HOM05D003247 ORTHO05D003974 7.1e-17 90.5 63 69.8
BcaC02g10366 Brassica carinata HOM05D003247 ORTHO05D003974 7.1e-17 90.5 63 69.8
A06p04610 Brassica napus HOM05D003247 ORTHO05D003974 7.1e-17 90.5 63 69.8
A06p21950 Brassica napus HOM05D003247 ORTHO05D003974 7.1e-17 90.5 63 69.8
BolC4t24494H Brassica oleracea HOM05D003247 ORTHO05D003974 7.1e-17 90.5 63 69.8
BraA06t23665Z Brassica rapa HOM05D003247 ORTHO05D003974 7.1e-17 90.5 63 69.8
BraA06t25281Z Brassica rapa HOM05D003247 ORTHO05D003974 7.1e-17 90.5 63 69.8
Carub.0002s0107 Capsella rubella HOM05D003247 ORTHO05D003974 7.1e-17 90.5 63 69.8
Thhalv10023233m.g Eutrema salsugineum HOM05D003247 ORTHO05D003974 7.1e-17 90.5 63 69.8
Sp2g00910 Schrenkiella parvula HOM05D003247 ORTHO05D003974 7.1e-17 90.5 63 69.8
Aa31LG2G950 Aethionema arabicum HOM05D003247 ORTHO05D003974 1.2e-16 89.7 62 71.0
Nitab4.5_0001615g0030 Nicotiana tabacum HOM05D003247 ORTHO05D003974 1.2e-16 89.7 63 68.3
C06p02710 Brassica napus HOM05D003247 ORTHO05D003974 1.6e-16 89.4 63 68.3
Nitab4.5_0002975g0050 Nicotiana tabacum HOM05D003247 ORTHO05D003974 2.1e-16 89.0 62 69.4
QL12p032548 Quercus lobata HOM05D003247 ORTHO05D003974 2.1e-16 89.0 63 69.8
THA.LOC104809378 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 2.1e-16 89.0 63 68.3
Zm00001eb038870 Zea mays HOM05D003247 ORTHO05D003974 2.1e-16 89.0 63 68.3
Duzib205G1189 Durio zibethinus HOM05D003247 ORTHO05D003974 2.7e-16 88.6 63 68.3
Eucgr.D01833 Eucalyptus grandis HOM05D003247 ORTHO05D003974 2.7e-16 88.6 62 69.4
Hund14825 Selenicereus undatus HOM05D003247 ORTHO05D003974 2.7e-16 88.6 63 68.3
CANSAT35G0036 Cannabis sativa HOM05D003247 ORTHO05D003974 3.5e-16 88.2 63 66.7
Nn6g33377 Nelumbo nucifera HOM05D003247 ORTHO05D003974 3.5e-16 88.2 63 68.3
Phvul.002G290908 Phaseolus vulgaris HOM05D003247 ORTHO05D003974 3.5e-16 88.2 63 68.3
CiPaw.11G133300 Carya illinoinensis HOM05D003247 ORTHO05D003974 4.6e-16 87.8 63 68.3
Haze_08801 Corylus avellana HOM05D003247 ORTHO05D003974 4.6e-16 87.8 63 68.3
DCAR_008371 Daucus carota HOM05D003247 ORTHO05D003974 4.6e-16 87.8 63 68.3
Dinv38927 Davidia involucrata HOM05D003247 ORTHO05D003974 4.6e-16 87.8 63 68.3
Migut.A00742 Erythranthe guttata HOM05D003247 ORTHO05D003974 4.6e-16 87.8 62 69.4
Glyma.05G209200 Glycine max HOM05D003247 ORTHO05D003974 4.6e-16 87.8 63 68.3
Glyma.08G015900 Glycine max HOM05D003247 ORTHO05D003974 4.6e-16 87.8 63 68.3
Gohir.A03G018800 Gossypium hirsutum HOM05D003247 ORTHO05D003974 4.6e-16 87.8 63 68.3
Gohir.D03G150100 Gossypium hirsutum HOM05D003247 ORTHO05D003974 4.6e-16 87.8 63 68.3
Gorai.003G157400 Gossypium raimondii HOM05D003247 ORTHO05D003974 4.6e-16 87.8 63 68.3
Oeu011040.2 Olea europaea HOM05D003247 ORTHO05D003974 4.6e-16 87.8 62 69.4
Thecc.03G281500 Theobroma cacao HOM05D003247 ORTHO05D003974 4.6e-16 87.8 63 68.3
unitig_61.g26270 Utricularia gibba HOM05D003247 ORTHO05D003974 4.6e-16 87.8 62 69.4
HPP92_025967 Vanilla planifolia HOM05D003247 ORTHO05D003974 4.6e-16 87.8 63 68.3
Ah.02g110410 Amaranthus hybridus HOM05D003247 ORTHO05D003974 6.0e-16 87.4 62 69.4
ATR0680G039 Amborella trichopoda HOM05D003247 ORTHO05D003974 6.0e-16 87.4 63 66.7
arahy.Tifrunner.gnm1.ann1.1Z7M3S Arachis hypogaea HOM05D003247 ORTHO05D003974 6.0e-16 87.4 63 66.7
BcaC08g43016 Brassica carinata HOM05D003247 ORTHO05D003974 6.0e-16 87.4 62 69.4
Nn1g01570 Nelumbo nucifera HOM05D003247 ORTHO05D003974 6.0e-16 87.4 63 66.7
BolC6t35397H Brassica oleracea HOM05D003247 ORTHO05D003974 7.8e-16 87.0 63 66.7
CSS0019820 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 7.8e-16 87.0 62 69.4
CSS0047123 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 7.8e-16 87.0 62 69.4
Ciclev10018808m.g Citrus clementina HOM05D003247 ORTHO05D003974 7.8e-16 87.0 62 69.4
Dinv37625 Davidia involucrata HOM05D003247 ORTHO05D003974 7.8e-16 87.0 62 69.4
FvH4_5g02730 Fragaria vesca HOM05D003247 ORTHO05D003974 7.8e-16 87.0 63 66.7
FAN04G2168 Fragaria x ananassa HOM05D003247 ORTHO05D003974 7.8e-16 87.0 63 66.7
FAN13G0605 Fragaria x ananassa HOM05D003247 ORTHO05D003974 7.8e-16 87.0 63 66.7
FAN18G0212 Fragaria x ananassa HOM05D003247 ORTHO05D003974 7.8e-16 87.0 63 66.7
HanXRQChr03g0086871 Helianthus annuus HOM05D003247 ORTHO05D003974 7.8e-16 87.0 63 66.7
Lsat_1_v5_gn_6_86420 Lactuca sativa HOM05D003247 ORTHO05D003974 7.8e-16 87.0 63 68.3
Manes.02G020950 Manihot esculenta HOM05D003247 ORTHO05D003974 7.8e-16 87.0 63 66.7
Os08g0562700 Oryza sativa ssp. japonica HOM05D003247 ORTHO05D003974 7.8e-16 87.0 63 66.7
Rhsim02G0233100 Rhododendron simsii HOM05D003247 ORTHO05D003974 7.8e-16 87.0 62 69.4
RhsimUnG0160000 Rhododendron simsii HOM05D003247 ORTHO05D003974 7.8e-16 87.0 62 69.4
RcHm_v2.0_Chr7g0197201 Rosa chinensis HOM05D003247 ORTHO05D003974 7.8e-16 87.0 63 66.7
Solyc08g081250.4 Solanum lycopersicum HOM05D003247 ORTHO05D003974 7.8e-16 87.0 63 66.7
Sopen08g029560 Solanum pennellii HOM05D003247 ORTHO05D003974 7.8e-16 87.0 63 66.7
PGSC0003DMG400012199 Solanum tuberosum HOM05D003247 ORTHO05D003974 7.8e-16 87.0 63 66.7
Ah.12g051740 Amaranthus hybridus HOM05D003247 ORTHO05D003974 1.0e-15 86.7 63 66.7
arahy.Tifrunner.gnm1.ann1.5U7DNF Arachis hypogaea HOM05D003247 ORTHO05D003974 1.0e-15 86.7 62 67.7
CDE05G0892 Ceratophyllum demersum HOM05D003247 ORTHO05D003974 1.0e-15 86.7 63 66.7
Cc02_g32980 Coffea canephora HOM05D003247 ORTHO05D019032 1.0e-15 86.7 50 86.0
DCAR_008372 Daucus carota HOM05D003247 ORTHO05D003974 1.0e-15 86.7 63 66.7
Duzib084G1173 Durio zibethinus HOM05D003247 ORTHO05D003974 1.0e-15 86.7 63 66.7
Lj4g0006056 Lotus japonicus HOM05D003247 ORTHO05D003974 1.0e-15 86.7 63 66.7
PGR031G0275 Punica granatum HOM05D003247 ORTHO05D003974 1.0e-15 86.7 63 66.7
Sc01g0005530 Simmondsia chinensis HOM05D003247 ORTHO05D003974 1.0e-15 86.7 63 66.7
Sc01g0009690 Simmondsia chinensis HOM05D003247 ORTHO05D003974 1.0e-15 86.7 63 66.7
GSVIVG01019730001 Vitis vinifera HOM05D003247 ORTHO05D003974 1.0e-15 86.7 63 66.7
MSTRG.1858 Avicennia marina HOM05D003247 ORTHO05D003974 1.3e-15 86.3 63 65.1
Ca_17516_v3 Cicer arietinum L. HOM05D003247 ORTHO05D003974 1.3e-15 86.3 63 65.1
FAN08G0767 Fragaria x ananassa HOM05D003247 ORTHO05D003974 1.3e-15 86.3 62 67.7
Psat7g031800 Pisum sativum HOM05D003247 ORTHO05D003974 1.3e-15 86.3 63 66.7
Atru.chr9.2165 Acer truncatum HOM05D003247 ORTHO05D003974 1.7e-15 85.9 62 67.7
Actinidia01994 Actinidia chinensis HOM05D003247 ORTHO05D003974 1.7e-15 85.9 62 67.7
EL10Ac5g12795 Beta vulgaris HOM05D003247 ORTHO05D003974 1.7e-15 85.9 63 66.7
CAN.G774.62 Capsicum annuum HOM05D003247 ORTHO05D003974 1.7e-15 85.9 63 65.1
HanXRQChr13g0416311 Helianthus annuus HOM05D003247 ORTHO05D003974 1.7e-15 85.9 63 66.7
Potri.001G102051 Populus trichocarpa HOM05D003247 ORTHO05D003974 1.7e-15 85.9 63 66.7
Potri.003G129500 Populus trichocarpa HOM05D003247 ORTHO05D003974 1.7e-15 85.9 63 66.7
Sed0003481 Sechium edule HOM05D003247 ORTHO05D003974 1.7e-15 85.9 63 65.1
TAR636G0433 Trochodendron aralioides HOM05D003247 ORTHO05D003974 1.7e-15 85.9 62 67.7
vmacro11386 Vaccinium macrocarpon HOM05D003247 ORTHO05D003974 1.7e-15 85.9 63 66.7
VMungo0251G1424 Vigna mungo HOM05D003247 ORTHO05D003974 1.7e-15 85.9 63 66.7
AUR62010702 Chenopodium quinoa HOM05D003247 ORTHO05D003974 3.0e-15 85.1 62 67.7
AUR62017183 Chenopodium quinoa HOM05D003247 ORTHO05D003974 3.0e-15 85.1 62 67.7
Peaxi162Scf00119g00138 Petunia axillaris HOM05D003247 ORTHO05D003974 3.0e-15 85.1 62 66.1
SalBow1G0073 Salvia bowleyana HOM05D003247 ORTHO05D003974 3.0e-15 85.1 62 67.7
SalBow1G5596 Salvia bowleyana HOM05D003247 ORTHO05D003974 3.0e-15 85.1 62 67.7
ClCG01G002580 Citrullus lanatus HOM05D003247 ORTHO05D003974 3.9e-15 84.7 63 65.1
CsaV3_5G002680 Cucumis sativus L. HOM05D003247 ORTHO05D003974 3.9e-15 84.7 63 65.1
Sabra01G0077100 Salix brachista HOM05D003247 ORTHO05D003974 3.9e-15 84.7 63 65.1
Sabra01G0077200 Salix brachista HOM05D003247 ORTHO05D003974 3.9e-15 84.7 63 65.1
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 3.9e-15 84.7 62 67.7
ECA240G1820 Erigeron canadensis HOM05D003247 ORTHO05D003974 5.1e-15 84.3 63 65.1
MD14G1107600 Malus domestica HOM05D003247 ORTHO05D003974 5.1e-15 84.3 63 65.1
Mapoly0042s0035 Marchantia polymorpha HOM05D003247 ORTHO05D003974 5.1e-15 84.3 63 63.5
Medtr8g098525 Medicago truncatula HOM05D003247 ORTHO05D003974 5.1e-15 84.3 63 63.5
MELO3C005688.2 Cucumis melo HOM05D003247 ORTHO05D003974 6.6e-15 84.0 62 66.1
TPR.G12767 Trifolium pratense HOM05D003247 ORTHO05D003974 6.6e-15 84.0 62 66.1
MBI17_g42619_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 8.7e-15 83.6 62 67.7
Pp3c15_1150 Physcomitrium patens HOM05D003247 ORTHO05D003974 8.7e-15 83.6 63 63.5
Potri.001G101975 Populus trichocarpa HOM05D003247 ORTHO05D003974 1.1e-14 83.2 63 63.5
Prupe.5G103100 Prunus persica HOM05D003247 ORTHO05D003974 1.1e-14 83.2 63 63.5
TWI60G0271 Tripterygium wilfordii HOM05D003247 ORTHO05D003974 1.1e-14 83.2 63 63.5
Cc02_g32970 Coffea canephora HOM05D003247 ORTHO05D019032 1.5e-14 82.8 55 74.5
EL10Ac9g20777 Beta vulgaris HOM05D003247 ORTHO05D003974 1.9e-14 82.4 62 66.1
MD06G1086400 Malus domestica HOM05D003247 ORTHO05D003974 1.9e-14 82.4 76 57.9
Actinidia14574 Actinidia chinensis HOM05D003247 ORTHO05D003974 2.5e-14 82.0 63 63.5
Aqoxy5G04015 Aquilegia oxysepala HOM05D003247 ORTHO05D003974 2.5e-14 82.0 63 63.5
PSO063G5587 Papaver somniferum HOM05D003247 ORTHO05D003974 3.3e-14 81.6 63 61.9
PSO832G0897 Papaver somniferum HOM05D003247 ORTHO05D003974 3.3e-14 81.6 63 61.9
Migut.E01080 Erythranthe guttata HOM05D003247 ORTHO05D003974 4.3e-14 81.3 62 62.9
AagrBONN_evm.TU.Sc2ySwM_228.2960 Anthoceros agrestis HOM05D003247 ORTHO05D003974 5.6e-14 80.9 63 61.9
PSO210G5648 Papaver somniferum HOM05D003247 ORTHO05D003974 5.6e-14 80.9 63 61.9
THA.LOC104817937 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 5.6e-14 80.9 63 61.9
Lalb_Chr16g0390091 Lupinus albus HOM05D003247 ORTHO05D003974 9.6e-14 80.1 46 80.4
Oeu042332.3 Olea europaea HOM05D003247 ORTHO05D003974 1.2e-13 79.7 63 63.5
HanXRQChr03g0086881 Helianthus annuus HOM05D003247 ORTHO05D003974 1.6e-13 79.3 63 61.9
Lalb_Chr09g0332981 Lupinus albus HOM05D003247 ORTHO05D003974 2.1e-13 79.0 47 76.6
Pp3c26_1330 Physcomitrium patens HOM05D003247 ORTHO05D003974 2.1e-13 79.0 63 61.9
Lalb_Chr05g0222801 Lupinus albus HOM05D003247 ORTHO05D003974 2.8e-13 78.6 50 72.0
Lsat_1_v5_gn_6_86400 Lactuca sativa HOM05D003247 ORTHO05D003974 3.6e-13 78.2 63 61.9
CDE08G0568 Ceratophyllum demersum HOM05D003247 ORTHO05D003974 6.2e-13 77.4 44 77.3
Pp3c9_1240 Physcomitrium patens HOM05D003247 ORTHO05D003974 6.2e-13 77.4 63 61.9
TPR.G28250 Trifolium pratense HOM05D003247 ORTHO05D003974 6.2e-13 77.4 63 58.7
Sed0014492 Sechium edule HOM05D003247 ORTHO05D003974 8.1e-13 77.0 63 60.3
PSO210G5645 Papaver somniferum HOM05D003247 ORTHO05D003974 1.1e-12 76.6 63 60.3
THA.LOC104815066 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 1.4e-12 76.3 63 58.7
TWI81G0748 Tripterygium wilfordii HOM05D003247 ORTHO05D003974 2.4e-12 75.5 63 60.3
SMO119G0190 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 4.0e-12 74.7 63 58.7
SMO119G0209 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 4.0e-12 74.7 63 58.7
SMO351G0363 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 4.0e-12 74.7 63 58.7
MCO16G652 Micromonas commoda HOM05D003247 ORTHO05D003974 9.0e-12 73.6 63 55.6
ECA240G2658 Erigeron canadensis HOM05D000167 ORTHO05D000994 3.4e-11 71.6 43 76.7
PRCOL_00005594 Prasinoderma coloniale HOM05D003247 ORTHO05D003974 2.9e-10 68.6 63 49.2
MCO13G113 Micromonas commoda HOM05D003247 ORTHO05D003974 4.9e-10 67.8 63 54.0
Cpa.g.sc214.14 Carica papaya HOM05D003247 ORTHO05D003974 8.4e-10 67.0 36 83.3
Cc00_g22840 Coffea canephora HOM05D003247 ORTHO05D019032 1.1e-09 66.6 50 68.0
Cc00_g29250 Coffea canephora HOM05D000343 ORTHO05D000975 1.9e-09 65.9 45 75.6
Gohir.D08G202250 Gossypium hirsutum HOM05D003247 ORTHO05D003974 1.9e-09 65.9 63 57.1
CBR_g30015 Chara braunii HOM05D003247 ORTHO05D003974 2.4e-09 65.5 63 50.8
CBR_g951 Chara braunii HOM05D003247 ORTHO05D003974 5.4e-09 64.3 63 50.8
PSO149G0001 Papaver somniferum HOM05D003247 ORTHO05D003974 5.4e-09 64.3 63 50.8
Cre17.g736650 Chlamydomonas reinhardtii HOM05D003247 ORTHO05D003974 9.3e-09 63.5 63 49.2
CBR_g30016 Chara braunii HOM05D003247 ORTHO05D003974 5.1e-07 57.8 63 46.0
SMO169G0195 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 2.5e-06 55.5 70 40.0
SGA_v2.0_scaffold173G39167 Striga asiatica HOM05D003247 ORTHO05D003974 2.5e-06 55.5 46 63.0
Gohir.A08G183600 Gossypium hirsutum HOM05D003247 ORTHO05D003974 9.6e-06 53.5 46 63.0
MBI18_g02832_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 9.6e-06 53.5 48 58.3


User provided reference genes

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