Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g32980 Coffea canephora HOM05D003247 ORTHO05D019032 1.3e-84 316.2 153 100.0
Cc00_g15000 Coffea canephora HOM05D003247 ORTHO05D019032 1.8e-33 146.4 93 78.5
Cc00_g15010 Coffea canephora HOM05D003247 ORTHO05D019032 2.3e-31 139.4 101 71.3
Cc02_g32970 Coffea canephora HOM05D003247 ORTHO05D019032 1.4e-28 130.2 126 58.7
BcaC02g10366 Brassica carinata HOM05D003247 ORTHO05D003974 2.6e-27 125.9 67 86.6
BolC4t24494H Brassica oleracea HOM05D003247 ORTHO05D003974 2.6e-27 125.9 67 86.6
BraA06t23665Z Brassica rapa HOM05D003247 ORTHO05D003974 2.6e-27 125.9 67 86.6
Thhalv10023233m.g Eutrema salsugineum HOM05D003247 ORTHO05D003974 2.6e-27 125.9 67 86.6
Sp2g00910 Schrenkiella parvula HOM05D003247 ORTHO05D003974 2.6e-27 125.9 67 86.6
BraA06t25281Z Brassica rapa HOM05D003247 ORTHO05D003974 7.5e-27 124.4 85 70.6
A06p04610 Brassica napus HOM05D003247 ORTHO05D003974 1.3e-26 123.6 67 83.6
Gorai.003G157400 Gossypium raimondii HOM05D003247 ORTHO05D003974 2.2e-26 122.9 72 79.2
Nitab4.5_0001615g0030 Nicotiana tabacum HOM05D003247 ORTHO05D003974 2.2e-26 122.9 67 83.6
Ah.12g051740 Amaranthus hybridus HOM05D003247 ORTHO05D003974 2.9e-26 122.5 70 80.0
Gohir.A03G018800 Gossypium hirsutum HOM05D003247 ORTHO05D003974 2.9e-26 122.5 70 80.0
Gohir.D03G150100 Gossypium hirsutum HOM05D003247 ORTHO05D003974 2.9e-26 122.5 70 80.0
GSVIVG01019730001 Vitis vinifera HOM05D003247 ORTHO05D003974 4.9e-26 121.7 70 80.0
CiPaw.11G133300 Carya illinoinensis HOM05D003247 ORTHO05D003974 8.3e-26 120.9 67 83.6
Haze_08801 Corylus avellana HOM05D003247 ORTHO05D003974 8.3e-26 120.9 67 83.6
Oeu042332.3 Olea europaea HOM05D003247 ORTHO05D003974 8.3e-26 120.9 67 83.6
A06p21950 Brassica napus HOM05D003247 ORTHO05D003974 1.1e-25 120.6 65 84.6
C06p02710 Brassica napus HOM05D003247 ORTHO05D003974 1.1e-25 120.6 79 72.2
EL10Ac5g12795 Beta vulgaris HOM05D003247 ORTHO05D003974 1.4e-25 120.2 67 83.6
Glyma.05G209200 Glycine max HOM05D003247 ORTHO05D003974 1.9e-25 119.8 65 84.6
Lj4g0006056 Lotus japonicus HOM05D003247 ORTHO05D003974 2.4e-25 119.4 66 83.3
arahy.Tifrunner.gnm1.ann1.1Z7M3S Arachis hypogaea HOM05D003247 ORTHO05D003974 3.2e-25 119.0 64 84.4
MSTRG.1858 Avicennia marina HOM05D003247 ORTHO05D003974 3.2e-25 119.0 66 81.8
CAN.G774.62 Capsicum annuum HOM05D003247 ORTHO05D003974 3.2e-25 119.0 67 79.1
vmacro11386 Vaccinium macrocarpon HOM05D003247 ORTHO05D003974 3.2e-25 119.0 66 83.3
FAN04G2168 Fragaria x ananassa HOM05D003247 ORTHO05D003974 4.1e-25 118.6 67 80.6
FAN13G0605 Fragaria x ananassa HOM05D003247 ORTHO05D003974 4.1e-25 118.6 67 80.6
FAN18G0212 Fragaria x ananassa HOM05D003247 ORTHO05D003974 4.1e-25 118.6 67 80.6
PGSC0003DMG400012199 Solanum tuberosum HOM05D003247 ORTHO05D003974 4.1e-25 118.6 64 84.4
BolC6t35397H Brassica oleracea HOM05D003247 ORTHO05D003974 5.4e-25 118.2 79 70.9
DCAR_008372 Daucus carota HOM05D003247 ORTHO05D003974 5.4e-25 118.2 64 84.4
Glyma.08G015900 Glycine max HOM05D003247 ORTHO05D003974 5.4e-25 118.2 80 71.2
Phvul.002G290908 Phaseolus vulgaris HOM05D003247 ORTHO05D003974 5.4e-25 118.2 67 82.1
AL2G11370 Arabidopsis lyrata HOM05D003247 ORTHO05D003974 9.2e-25 117.5 62 87.1
AT1G63770 Arabidopsis thaliana HOM05D003247 ORTHO05D003974 9.2e-25 117.5 62 87.1
Carub.0002s0107 Capsella rubella HOM05D003247 ORTHO05D003974 9.2e-25 117.5 62 87.1
Sed0003481 Sechium edule HOM05D003247 ORTHO05D003974 9.2e-25 117.5 64 82.8
Manes.02G020950 Manihot esculenta HOM05D003247 ORTHO05D003974 1.2e-24 117.1 62 87.1
Sc01g0005530 Simmondsia chinensis HOM05D003247 ORTHO05D003974 1.6e-24 116.7 64 82.8
ClCG01G002580 Citrullus lanatus HOM05D003247 ORTHO05D003974 2.0e-24 116.3 64 82.8
CsaV3_5G002680 Cucumis sativus L. HOM05D003247 ORTHO05D003974 2.0e-24 116.3 64 82.8
Prupe.5G103100 Prunus persica HOM05D003247 ORTHO05D003974 2.0e-24 116.3 67 79.1
Os08g0562700 Oryza sativa ssp. japonica HOM05D003247 ORTHO05D003974 2.7e-24 115.9 66 77.3
THA.LOC104809378 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 2.7e-24 115.9 62 85.5
Duzib205G1189 Durio zibethinus HOM05D003247 ORTHO05D003974 3.5e-24 115.5 62 85.5
Hund14825 Selenicereus undatus HOM05D003247 ORTHO05D003974 3.5e-24 115.5 62 85.5
CANSAT35G0036 Cannabis sativa HOM05D003247 ORTHO05D003974 4.6e-24 115.2 62 83.9
Nn6g33377 Nelumbo nucifera HOM05D003247 ORTHO05D003974 4.6e-24 115.2 62 85.5
Actinidia14574 Actinidia chinensis HOM05D003247 ORTHO05D003974 6.0e-24 114.8 62 83.9
Thecc.03G281500 Theobroma cacao HOM05D003247 ORTHO05D003974 6.0e-24 114.8 62 85.5
ATR0680G039 Amborella trichopoda HOM05D003247 ORTHO05D003974 7.8e-24 114.4 62 83.9
Nn1g01570 Nelumbo nucifera HOM05D003247 ORTHO05D003974 7.8e-24 114.4 62 83.9
FvH4_5g02730 Fragaria vesca HOM05D003247 ORTHO05D003974 1.0e-23 114.0 62 83.9
HanXRQChr03g0086871 Helianthus annuus HOM05D003247 ORTHO05D003974 1.0e-23 114.0 62 83.9
RcHm_v2.0_Chr7g0197201 Rosa chinensis HOM05D003247 ORTHO05D003974 1.0e-23 114.0 62 83.9
Sabra01G0077200 Salix brachista HOM05D003247 ORTHO05D003974 1.0e-23 114.0 63 82.5
Solyc08g081250.4 Solanum lycopersicum HOM05D003247 ORTHO05D003974 1.0e-23 114.0 62 83.9
Sopen08g029560 Solanum pennellii HOM05D003247 ORTHO05D003974 1.0e-23 114.0 62 83.9
Zm00001eb038870 Zea mays HOM05D003247 ORTHO05D003974 1.0e-23 114.0 62 82.3
CDE05G0892 Ceratophyllum demersum HOM05D003247 ORTHO05D003974 1.3e-23 113.6 62 83.9
Duzib084G1173 Durio zibethinus HOM05D003247 ORTHO05D003974 1.3e-23 113.6 62 83.9
PGR031G0275 Punica granatum HOM05D003247 ORTHO05D003974 1.3e-23 113.6 62 83.9
Sc01g0009690 Simmondsia chinensis HOM05D003247 ORTHO05D003974 1.3e-23 113.6 62 83.9
Ca_17516_v3 Cicer arietinum L. HOM05D003247 ORTHO05D003974 1.7e-23 113.2 62 82.3
Psat7g031800 Pisum sativum HOM05D003247 ORTHO05D003974 1.7e-23 113.2 62 83.9
Potri.001G101975 Populus trichocarpa HOM05D003247 ORTHO05D003974 1.7e-23 113.2 62 83.9
HanXRQChr13g0416311 Helianthus annuus HOM05D003247 ORTHO05D003974 2.3e-23 112.8 62 83.9
Potri.001G102051 Populus trichocarpa HOM05D003247 ORTHO05D003974 2.3e-23 112.8 62 83.9
Potri.003G129500 Populus trichocarpa HOM05D003247 ORTHO05D003974 2.3e-23 112.8 62 83.9
VMungo0251G1424 Vigna mungo HOM05D003247 ORTHO05D003974 2.3e-23 112.8 62 83.9
Lsat_1_v5_gn_6_86420 Lactuca sativa HOM05D003247 ORTHO05D003974 3.0e-23 112.5 62 82.3
Sabra01G0077100 Salix brachista HOM05D003247 ORTHO05D003974 5.0e-23 111.7 62 82.3
ECA240G1820 Erigeron canadensis HOM05D003247 ORTHO05D003974 6.6e-23 111.3 62 82.3
MD14G1107600 Malus domestica HOM05D003247 ORTHO05D003974 6.6e-23 111.3 62 82.3
Mapoly0042s0035 Marchantia polymorpha HOM05D003247 ORTHO05D003974 6.6e-23 111.3 62 80.6
Medtr8g098525 Medicago truncatula HOM05D003247 ORTHO05D003974 6.6e-23 111.3 62 80.6
Pp3c15_1150 Physcomitrium patens HOM05D003247 ORTHO05D003974 1.1e-22 110.5 62 80.6
TWI60G0271 Tripterygium wilfordii HOM05D003247 ORTHO05D003974 1.5e-22 110.2 62 80.6
Aqoxy5G04015 Aquilegia oxysepala HOM05D003247 ORTHO05D003974 3.3e-22 109.0 62 80.6
TPR.G28250 Trifolium pratense HOM05D003247 ORTHO05D003974 3.3e-22 109.0 64 76.6
PSO063G5587 Papaver somniferum HOM05D003247 ORTHO05D003974 4.3e-22 108.6 62 79.0
PSO832G0897 Papaver somniferum HOM05D003247 ORTHO05D003974 4.3e-22 108.6 62 79.0
Sed0014492 Sechium edule HOM05D003247 ORTHO05D003974 4.3e-22 108.6 64 78.1
AagrBONN_evm.TU.Sc2ySwM_228.2960 Anthoceros agrestis HOM05D003247 ORTHO05D003974 7.3e-22 107.8 62 79.0
PSO210G5648 Papaver somniferum HOM05D003247 ORTHO05D003974 7.3e-22 107.8 62 79.0
THA.LOC104817937 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 7.3e-22 107.8 62 79.0
HanXRQChr03g0086881 Helianthus annuus HOM05D003247 ORTHO05D003974 2.1e-21 106.3 62 79.0
Pp3c26_1330 Physcomitrium patens HOM05D003247 ORTHO05D003974 2.8e-21 105.9 62 79.0
Cc08_g14920 Coffea canephora HOM05D003247 ORTHO05D003974 4.7e-21 105.1 57 86.0
TWI81G0748 Tripterygium wilfordii HOM05D003247 ORTHO05D003974 6.2e-21 104.8 62 79.0
Pp3c9_1240 Physcomitrium patens HOM05D003247 ORTHO05D003974 8.1e-21 104.4 62 79.0
BcaB07g31551 Brassica carinata HOM05D003247 ORTHO05D003974 1.4e-20 103.6 57 84.2
C04p29680 Brassica napus HOM05D003247 ORTHO05D003974 1.4e-20 103.6 57 84.2
Lj8A219G33 Lonicera japonica HOM05D003247 ORTHO05D003974 1.4e-20 103.6 57 84.2
QL12p032548 Quercus lobata HOM05D003247 ORTHO05D003974 1.4e-20 103.6 61 78.7
Aa31LG2G950 Aethionema arabicum HOM05D003247 ORTHO05D003974 1.8e-20 103.2 56 85.7
Nitab4.5_0002975g0050 Nicotiana tabacum HOM05D003247 ORTHO05D003974 3.1e-20 102.4 56 83.9
PSO210G5645 Papaver somniferum HOM05D003247 ORTHO05D003974 3.1e-20 102.4 62 75.8
Eucgr.D01833 Eucalyptus grandis HOM05D003247 ORTHO05D003974 4.0e-20 102.1 56 83.9
SMO119G0190 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 5.2e-20 101.7 62 75.8
SMO119G0209 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 5.2e-20 101.7 62 75.8
SMO351G0363 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 5.2e-20 101.7 62 75.8
Migut.A00742 Erythranthe guttata HOM05D003247 ORTHO05D003974 6.8e-20 101.3 56 83.9
Oeu011040.2 Olea europaea HOM05D003247 ORTHO05D003974 6.8e-20 101.3 56 83.9
THA.LOC104815066 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 6.8e-20 101.3 62 74.2
unitig_61.g26270 Utricularia gibba HOM05D003247 ORTHO05D003974 6.8e-20 101.3 56 83.9
Ah.02g110410 Amaranthus hybridus HOM05D003247 ORTHO05D003974 8.9e-20 100.9 56 83.9
BcaC08g43016 Brassica carinata HOM05D003247 ORTHO05D003974 8.9e-20 100.9 56 83.9
Dinv38927 Davidia involucrata HOM05D003247 ORTHO05D003974 8.9e-20 100.9 59 79.7
CSS0019820 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 1.2e-19 100.5 56 83.9
CSS0047123 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 1.2e-19 100.5 56 83.9
Ciclev10018808m.g Citrus clementina HOM05D003247 ORTHO05D003974 1.2e-19 100.5 56 83.9
Dinv37625 Davidia involucrata HOM05D003247 ORTHO05D003974 1.2e-19 100.5 56 83.9
Rhsim02G0233100 Rhododendron simsii HOM05D003247 ORTHO05D003974 1.2e-19 100.5 56 83.9
RhsimUnG0160000 Rhododendron simsii HOM05D003247 ORTHO05D003974 1.2e-19 100.5 56 83.9
arahy.Tifrunner.gnm1.ann1.5U7DNF Arachis hypogaea HOM05D003247 ORTHO05D003974 1.5e-19 100.1 56 82.1
DCAR_008371 Daucus carota HOM05D003247 ORTHO05D003974 2.0e-19 99.8 57 80.7
FAN08G0767 Fragaria x ananassa HOM05D003247 ORTHO05D003974 2.0e-19 99.8 56 82.1
MCO16G652 Micromonas commoda HOM05D003247 ORTHO05D003974 2.0e-19 99.8 62 71.0
HPP92_025967 Vanilla planifolia HOM05D003247 ORTHO05D003974 2.0e-19 99.8 57 80.7
Atru.chr9.2165 Acer truncatum HOM05D003247 ORTHO05D003974 2.6e-19 99.4 56 82.1
Actinidia01994 Actinidia chinensis HOM05D003247 ORTHO05D003974 2.6e-19 99.4 56 82.1
TAR636G0433 Trochodendron aralioides HOM05D003247 ORTHO05D003974 2.6e-19 99.4 56 82.1
Gohir.D08G202250 Gossypium hirsutum HOM05D003247 ORTHO05D003974 3.4e-19 99.0 70 70.0
AUR62010702 Chenopodium quinoa HOM05D003247 ORTHO05D003974 4.4e-19 98.6 56 82.1
AUR62017183 Chenopodium quinoa HOM05D003247 ORTHO05D003974 4.4e-19 98.6 56 82.1
Cc00_g29250 Coffea canephora HOM05D000343 ORTHO05D000975 4.4e-19 98.6 84 63.1
Peaxi162Scf00119g00138 Petunia axillaris HOM05D003247 ORTHO05D003974 4.4e-19 98.6 56 80.4
SalBow1G0073 Salvia bowleyana HOM05D003247 ORTHO05D003974 4.4e-19 98.6 56 82.1
SalBow1G5596 Salvia bowleyana HOM05D003247 ORTHO05D003974 4.4e-19 98.6 56 82.1
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 5.8e-19 98.2 56 82.1
MELO3C005688.2 Cucumis melo HOM05D003247 ORTHO05D003974 9.8e-19 97.4 56 80.4
TPR.G12767 Trifolium pratense HOM05D003247 ORTHO05D003974 9.8e-19 97.4 56 80.4
MBI17_g42619_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 1.3e-18 97.1 56 82.1
EL10Ac9g20777 Beta vulgaris HOM05D003247 ORTHO05D003974 1.7e-18 96.7 57 78.9
Migut.E01080 Erythranthe guttata HOM05D003247 ORTHO05D003974 3.7e-18 95.5 56 78.6
CDE08G0568 Ceratophyllum demersum HOM05D003247 ORTHO05D003974 4.9e-18 95.1 57 75.4
PRCOL_00005594 Prasinoderma coloniale HOM05D003247 ORTHO05D003974 1.1e-17 94.0 62 66.1
MD06G1086400 Malus domestica HOM05D003247 ORTHO05D003974 2.4e-17 92.8 57 75.4
CBR_g30015 Chara braunii HOM05D003247 ORTHO05D003974 3.2e-17 92.4 62 67.7
MCO13G113 Micromonas commoda HOM05D003247 ORTHO05D003974 3.2e-17 92.4 62 69.4
CBR_g951 Chara braunii HOM05D003247 ORTHO05D003974 7.1e-17 91.3 62 67.7
Cc00_g22840 Coffea canephora HOM05D003247 ORTHO05D019032 7.1e-17 91.3 56 80.4
Lsat_1_v5_gn_6_86400 Lactuca sativa HOM05D003247 ORTHO05D003974 1.6e-16 90.1 57 73.7
Cre17.g736650 Chlamydomonas reinhardtii HOM05D003247 ORTHO05D003974 2.7e-16 89.4 62 64.5
Lalb_Chr16g0390091 Lupinus albus HOM05D003247 ORTHO05D003974 7.8e-16 87.8 57 75.4
PSO149G0001 Papaver somniferum HOM05D003247 ORTHO05D003974 7.8e-16 87.8 62 66.1
CBR_g30016 Chara braunii HOM05D003247 ORTHO05D003974 1.7e-15 86.7 62 64.5
Cc02_g32990 Coffea canephora HOM05D003247 ORTHO05D019032 5.1e-15 85.1 50 86.0
Lalb_Chr09g0332981 Lupinus albus HOM05D003247 ORTHO05D003974 5.1e-15 85.1 57 71.9
Cc00_g15020 Coffea canephora HOM05D003247 ORTHO05D019032 9.5e-14 80.9 57 68.4
Lalb_Chr05g0222801 Lupinus albus HOM05D003247 ORTHO05D003974 1.4e-12 77.0 44 77.3
ECA240G2658 Erigeron canadensis HOM05D000167 ORTHO05D000994 7.6e-11 71.2 79 49.4
Cpa.g.sc214.14 Carica papaya HOM05D003247 ORTHO05D003974 6.4e-10 68.2 36 83.3
SGA_v2.0_scaffold173G39167 Striga asiatica HOM05D003247 ORTHO05D003974 1.9e-09 66.6 40 80.0
GSVIVG01013301001 Vitis vinifera HOM05D003247 ORTHO05D019032 4.1e-09 65.5 44 63.6
MBI18_g02832_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 7.1e-09 64.7 42 73.8
SHI07163 Sapria himalayana HOM05D003247 ORTHO05D003974 7.1e-09 64.7 66 50.0
SMO169G0195 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 1.2e-08 63.9 57 50.9
Gohir.A08G183600 Gossypium hirsutum HOM05D003247 ORTHO05D003974 3.5e-08 62.4 40 77.5
CSS0029032 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 1.7e-07 60.1 62 53.2
Lalb_Chr05g0224671 Lupinus albus HOM05D003247 ORTHO05D003974 4.3e-06 55.5 81 38.3


User provided reference genes

Program Settings